Strain Fitness in Pantoea sp. MT58 around IAI47_10520

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,230,656	-				-0.5
2,230,656	-				+0.8
2,230,656	-				-0.8
2,230,656	-				-0.4
2,230,656	-				+0.3
2,230,656	-				-0.8
2,230,656	-				-0.2
2,230,656	-				-0.3
2,230,656	-				+0.0
2,230,656	-				-0.5
2,230,656	-				-0.8
2,230,661	-				+0.6
2,230,661	-				+0.6
2,230,758	+				-1.3
2,230,880	-		IAI47_10520	0.26	-0.9
2,230,880	-		IAI47_10520	0.26	-0.7
2,230,984	-		IAI47_10520	0.41	-1.4
2,231,104	+		IAI47_10520	0.60	-2.7
2,231,104	+		IAI47_10520	0.60	+0.3
2,231,124	+		IAI47_10520	0.63	-2.0
2,231,125	-		IAI47_10520	0.63	-0.7
2,231,168	-		IAI47_10520	0.69	-1.1
2,231,168	-		IAI47_10520	0.69	-0.7
2,231,219	-		IAI47_10520	0.77	-1.0
2,231,318	-				-0.7
2,231,320	-				-1.5
2,231,320	-				-0.7
2,231,349	-				-0.8
2,231,349	-				-1.1
2,231,349	-				-1.3
2,231,369	+				-0.7
2,231,370	-				+0.3
2,231,370	-				+0.3
2,231,380	+				-0.7
2,231,390	+				+1.3
2,231,391	-				+1.3
2,231,391	-				+0.4
2,231,437	-		IAI47_10525	0.13	+0.3
2,231,443	-		IAI47_10525	0.15	+1.9
2,231,483	+		IAI47_10525	0.28	-0.1
2,231,483	+		IAI47_10525	0.28	-0.1
2,231,483	+		IAI47_10525	0.28	-0.9
2,231,483	+		IAI47_10525	0.28	-0.7
2,231,483	+		IAI47_10525	0.28	-0.1
2,231,484	-		IAI47_10525	0.28	-1.2
2,231,537	-		IAI47_10525	0.45	+0.1
2,231,553	+		IAI47_10525	0.50	+0.0
2,231,553	+		IAI47_10525	0.50	-0.3
2,231,553	+		IAI47_10525	0.50	+1.5
2,231,554	-		IAI47_10525	0.50	-1.7
2,231,554	-		IAI47_10525	0.50	-1.0
2,231,563	+		IAI47_10525	0.53	+0.3
2,231,563	+		IAI47_10525	0.53	-0.1
2,231,563	+		IAI47_10525	0.53	-0.7
2,231,563	+		IAI47_10525	0.53	-0.1
2,231,564	-		IAI47_10525	0.54	-0.1
2,231,564	-		IAI47_10525	0.54	+0.5
2,231,564	-		IAI47_10525	0.54	-0.3
2,231,564	-		IAI47_10525	0.54	+0.3
2,231,649	+		IAI47_10525	0.81	-0.3
2,231,649	+		IAI47_10525	0.81	-0.4
2,231,649	+		IAI47_10525	0.81	-0.0
2,231,649	+		IAI47_10525	0.81	-0.4
2,231,649	+		IAI47_10525	0.81	+1.3
2,231,650	-		IAI47_10525	0.81	+1.3
2,231,650	-		IAI47_10525	0.81	+1.3
2,231,650	-		IAI47_10525	0.81	-0.7
2,231,650	-		IAI47_10525	0.81	+0.3
2,231,650	-		IAI47_10525	0.81	+0.3
2,231,650	-		IAI47_10525	0.81	-0.8
2,231,650	-		IAI47_10525	0.81	+0.3
2,231,661	+		IAI47_10525	0.84	-1.1
2,231,674	+		IAI47_10525	0.89	-0.6
2,231,674	+		IAI47_10525	0.89	+0.1
2,231,674	+		IAI47_10525	0.89	-1.0
2,231,674	+		IAI47_10525	0.89	-0.7
2,231,674	+		IAI47_10525	0.89	+0.9
2,231,674	+		IAI47_10525	0.89	-1.4
2,231,675	-		IAI47_10525	0.89	+0.3
2,231,675	-		IAI47_10525	0.89	+0.4
2,231,675	-		IAI47_10525	0.89	-0.4
2,231,709	+				-0.5
2,231,710	-				+1.5
2,231,710	-				-0.3
2,231,710	-				-0.9
2,231,742	+				+1.0
2,231,742	+				-1.4
2,231,742	+				-0.7
2,231,742	+				+1.8
2,231,743	-				+0.3
2,231,743	-				-0.4
2,231,743	-				-0.4
2,231,743	-				-0.8
2,231,743	-				-1.5
2,231,743	-				+0.7
2,231,743	-				-0.9
2,231,744	+				+0.4
2,231,744	+				-0.4
2,231,744	+				+0.4
2,231,744	+				-0.2
2,231,744	+				+1.6
2,231,744	+				+0.2
2,231,744	+				+0.3
2,231,744	+				+0.9
2,231,744	+				-0.0
2,231,745	-				+0.3
2,231,745	-				+2.5
2,231,745	-				-0.7
2,231,745	-				-0.6
2,231,745	-				+0.3
2,231,745	-				+0.8
2,231,745	-				+0.0
2,231,745	-				-0.7
2,231,745	-				+1.1
2,231,745	-				+0.4
2,231,745	-				-0.4
2,231,765	+				+0.2
2,231,766	-				-0.3
2,231,766	-				+0.9
2,231,858	-				+1.0
2,231,865	+				+0.3
2,231,872	+				+0.1
2,231,873	-				+0.5
2,231,873	-				-0.7
2,231,874	+				+0.6
2,231,874	+				-0.7
2,231,875	-				-0.1
2,231,875	-				-1.7
2,231,881	+				+1.3
2,231,882	-				-1.0
2,231,882	-				+1.6
2,231,925	+		IAI47_10530	0.13	+0.3
2,231,925	+		IAI47_10530	0.13	+0.1
2,231,925	+		IAI47_10530	0.13	-0.7
2,231,926	-		IAI47_10530	0.13	-1.2
2,231,926	-		IAI47_10530	0.13	-1.2
2,231,926	-		IAI47_10530	0.13	+0.5
2,231,926	-		IAI47_10530	0.13	+1.3
2,231,943	+		IAI47_10530	0.22	-0.3
2,231,943	+		IAI47_10530	0.22	-0.3
2,231,943	+		IAI47_10530	0.22	+0.5
2,231,944	-		IAI47_10530	0.22	+0.5
2,231,944	-		IAI47_10530	0.22	+1.6
2,231,953	-		IAI47_10530	0.26	-0.5
2,231,981	-		IAI47_10530	0.40	-0.5
2,231,981	-		IAI47_10530	0.40	+0.7
2,231,981	-		IAI47_10530	0.40	-0.6
2,231,985	+		IAI47_10530	0.42	-1.5
2,231,985	+		IAI47_10530	0.42	+1.6
2,231,986	-		IAI47_10530	0.43	-0.3
2,232,004	+		IAI47_10530	0.51	-0.6
2,232,004	+		IAI47_10530	0.51	-0.9
2,232,005	-		IAI47_10530	0.52	+0.9
2,232,093	+				+0.6
2,232,093	+				-0.7
2,232,094	-				-0.3
2,232,094	-				+0.7
2,232,094	-				-0.7
2,232,149	+				+0.9
2,232,149	+				+1.1
2,232,210	+				-0.1
2,232,211	-				+2.7
2,232,211	-				-1.3
2,232,223	+				-1.0
2,232,223	+				+0.5
2,232,224	-				-0.3
2,232,224	-				+0.0
2,232,224	-				-0.3
2,232,283	-				-0.7
2,232,313	-				+0.0
2,232,334	+				+0.1
2,232,334	+				-0.4
2,232,334	+				+0.1
2,232,334	+				+1.2
2,232,335	-				-0.1
2,232,335	-				-0.2
2,232,335	-				+0.6
2,232,335	-				+0.3
2,232,346	+				+0.5
2,232,346	+				+0.3
2,232,346	+				-0.6
2,232,346	+				-1.2
2,232,346	+				-0.3
2,232,346	+				-0.0
2,232,346	+				-0.7
2,232,346	+				+0.8
2,232,346	+				+0.5
2,232,347	-				-1.1
2,232,347	-				+1.6
2,232,347	-				+0.8
2,232,347	-				-1.7
2,232,347	-				-0.0
2,232,347	-				+0.9
2,232,347	-				+1.5