Strain Fitness in Pantoea sp. MT58 around IAI47_06155

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06150 and IAI47_06155 are separated by 4 nucleotidesIAI47_06155 and IAI47_06160 are separated by 8 nucleotidesIAI47_06160 and IAI47_06165 are separated by 19 nucleotides IAI47_06150: IAI47_06150 - chorismate synthase, at 1,251,269 to 1,252,354 _06150 IAI47_06155: IAI47_06155 - penicillin-insensitive murein endopeptidase, at 1,252,359 to 1,253,183 _06155 IAI47_06160: IAI47_06160 - TSUP family transporter, at 1,253,192 to 1,253,995 _06160 IAI47_06165: IAI47_06165 - elongation factor P hydroxylase, at 1,254,015 to 1,254,560 _06165 Position (kb) 1252 1253 1254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1252.330 kb on + strandat 1252.331 kb on - strandat 1252.467 kb on - strand, within IAI47_06155at 1252.467 kb on - strand, within IAI47_06155at 1252.490 kb on + strand, within IAI47_06155at 1252.490 kb on + strand, within IAI47_06155at 1252.490 kb on + strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.561 kb on - strand, within IAI47_06155at 1252.589 kb on + strand, within IAI47_06155at 1252.590 kb on - strand, within IAI47_06155at 1252.616 kb on + strand, within IAI47_06155at 1252.616 kb on + strand, within IAI47_06155at 1252.616 kb on + strand, within IAI47_06155at 1252.617 kb on - strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.851 kb on - strand, within IAI47_06155at 1252.931 kb on + strand, within IAI47_06155at 1252.952 kb on + strand, within IAI47_06155at 1252.952 kb on + strand, within IAI47_06155at 1252.953 kb on - strand, within IAI47_06155at 1252.953 kb on - strand, within IAI47_06155at 1252.953 kb on - strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1253.168 kb on + strandat 1253.176 kb on + strandat 1253.176 kb on + strandat 1253.176 kb on + strandat 1253.177 kb on - strandat 1253.177 kb on - strandat 1253.177 kb on - strandat 1253.181 kb on + strandat 1253.181 kb on + strandat 1253.181 kb on + strandat 1253.261 kb on - strandat 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.290 kb on - strand, within IAI47_06160at 1253.290 kb on - strand, within IAI47_06160at 1253.290 kb on - strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.299 kb on - strand, within IAI47_06160at 1253.299 kb on - strand, within IAI47_06160at 1253.351 kb on - strand, within IAI47_06160at 1253.373 kb on - strand, within IAI47_06160at 1253.373 kb on - strand, within IAI47_06160at 1253.390 kb on + strand, within IAI47_06160at 1253.390 kb on + strand, within IAI47_06160at 1253.391 kb on - strand, within IAI47_06160at 1253.391 kb on - strand, within IAI47_06160at 1253.475 kb on + strand, within IAI47_06160at 1253.476 kb on - strand, within IAI47_06160at 1253.609 kb on + strand, within IAI47_06160at 1253.610 kb on - strand, within IAI47_06160at 1253.610 kb on - strand, within IAI47_06160at 1253.634 kb on + strand, within IAI47_06160at 1253.635 kb on - strand, within IAI47_06160at 1253.642 kb on + strand, within IAI47_06160at 1253.642 kb on + strand, within IAI47_06160at 1253.643 kb on - strand, within IAI47_06160at 1253.678 kb on + strand, within IAI47_06160at 1253.678 kb on + strand, within IAI47_06160at 1253.678 kb on + strand, within IAI47_06160at 1253.679 kb on - strand, within IAI47_06160at 1253.708 kb on + strand, within IAI47_06160at 1253.709 kb on - strand, within IAI47_06160at 1253.746 kb on + strand, within IAI47_06160at 1253.747 kb on - strand, within IAI47_06160at 1253.747 kb on - strand, within IAI47_06160at 1253.782 kb on + strand, within IAI47_06160at 1253.782 kb on + strand, within IAI47_06160at 1253.782 kb on + strand, within IAI47_06160at 1253.783 kb on - strand, within IAI47_06160at 1253.783 kb on - strand, within IAI47_06160at 1253.821 kb on + strand, within IAI47_06160at 1253.821 kb on + strand, within IAI47_06160at 1253.821 kb on + strand, within IAI47_06160at 1253.932 kb on + strandat 1253.932 kb on + strandat 1253.932 kb on + strandat 1253.932 kb on + strandat 1253.933 kb on - strandat 1253.933 kb on - strandat 1253.933 kb on - strandat 1253.933 kb on - strandat 1253.937 kb on + strandat 1253.938 kb on - strandat 1253.993 kb on + strandat 1254.002 kb on - strandat 1254.002 kb on - strandat 1254.009 kb on - strandat 1254.033 kb on + strandat 1254.033 kb on + strandat 1254.033 kb on + strandat 1254.033 kb on + strandat 1254.034 kb on - strandat 1254.034 kb on - strandat 1254.034 kb on - strandat 1254.034 kb on - strandat 1254.091 kb on + strand, within IAI47_06165at 1254.095 kb on + strand, within IAI47_06165at 1254.095 kb on + strand, within IAI47_06165at 1254.095 kb on + strand, within IAI47_06165at 1254.096 kb on - strand, within IAI47_06165at 1254.096 kb on - strand, within IAI47_06165at 1254.096 kb on - strand, within IAI47_06165at 1254.117 kb on + strand, within IAI47_06165at 1254.117 kb on + strand, within IAI47_06165at 1254.117 kb on + strand, within IAI47_06165at 1254.118 kb on - strand, within IAI47_06165at 1254.118 kb on - strand, within IAI47_06165at 1254.118 kb on - strand, within IAI47_06165at 1254.174 kb on + strand, within IAI47_06165at 1254.174 kb on + strand, within IAI47_06165at 1254.174 kb on + strand, within IAI47_06165at 1254.174 kb on + strand, within IAI47_06165at 1254.174 kb on + strand, within IAI47_06165at 1254.175 kb on - strand, within IAI47_06165

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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1,252,330 + +0.4
1,252,331 - -3.0
1,252,467 - IAI47_06155 0.13 -0.5
1,252,467 - IAI47_06155 0.13 -0.3
1,252,490 + IAI47_06155 0.16 -0.6
1,252,490 + IAI47_06155 0.16 -0.4
1,252,490 + IAI47_06155 0.16 -0.4
1,252,491 - IAI47_06155 0.16 -0.6
1,252,491 - IAI47_06155 0.16 -0.3
1,252,491 - IAI47_06155 0.16 +0.3
1,252,491 - IAI47_06155 0.16 +0.4
1,252,491 - IAI47_06155 0.16 -0.7
1,252,491 - IAI47_06155 0.16 +0.5
1,252,530 + IAI47_06155 0.21 -1.4
1,252,530 + IAI47_06155 0.21 -1.2
1,252,530 + IAI47_06155 0.21 +2.0
1,252,530 + IAI47_06155 0.21 -2.3
1,252,531 - IAI47_06155 0.21 -1.1
1,252,531 - IAI47_06155 0.21 +0.9
1,252,531 - IAI47_06155 0.21 -1.0
1,252,531 - IAI47_06155 0.21 +0.8
1,252,561 - IAI47_06155 0.24 -1.1
1,252,589 + IAI47_06155 0.28 +0.4
1,252,590 - IAI47_06155 0.28 +2.1
1,252,616 + IAI47_06155 0.31 -1.2
1,252,616 + IAI47_06155 0.31 +0.7
1,252,616 + IAI47_06155 0.31 +0.4
1,252,617 - IAI47_06155 0.31 +1.9
1,252,714 + IAI47_06155 0.43 -1.0
1,252,714 + IAI47_06155 0.43 -0.5
1,252,714 + IAI47_06155 0.43 -0.1
1,252,714 + IAI47_06155 0.43 -0.2
1,252,714 + IAI47_06155 0.43 +1.4
1,252,714 + IAI47_06155 0.43 +0.0
1,252,714 + IAI47_06155 0.43 +0.0
1,252,715 - IAI47_06155 0.43 -0.9
1,252,715 - IAI47_06155 0.43 +0.5
1,252,715 - IAI47_06155 0.43 -1.0
1,252,715 - IAI47_06155 0.43 -0.1
1,252,715 - IAI47_06155 0.43 -0.6
1,252,715 - IAI47_06155 0.43 +0.9
1,252,715 - IAI47_06155 0.43 +0.4
1,252,715 - IAI47_06155 0.43 -0.1
1,252,715 - IAI47_06155 0.43 +0.4
1,252,718 + IAI47_06155 0.44 -0.0
1,252,718 + IAI47_06155 0.44 -2.1
1,252,718 + IAI47_06155 0.44 +1.1
1,252,718 + IAI47_06155 0.44 -1.1
1,252,719 - IAI47_06155 0.44 +0.5
1,252,719 - IAI47_06155 0.44 +0.4
1,252,719 - IAI47_06155 0.44 +0.2
1,252,719 - IAI47_06155 0.44 -1.4
1,252,719 - IAI47_06155 0.44 -0.1
1,252,719 - IAI47_06155 0.44 +2.4
1,252,851 - IAI47_06155 0.60 +0.5
1,252,931 + IAI47_06155 0.69 +0.1
1,252,952 + IAI47_06155 0.72 +0.1
1,252,952 + IAI47_06155 0.72 +1.7
1,252,953 - IAI47_06155 0.72 -0.4
1,252,953 - IAI47_06155 0.72 -0.6
1,252,953 - IAI47_06155 0.72 +0.4
1,252,985 + IAI47_06155 0.76 -0.1
1,252,985 + IAI47_06155 0.76 -0.6
1,252,985 + IAI47_06155 0.76 +0.3
1,252,985 + IAI47_06155 0.76 -0.1
1,252,985 + IAI47_06155 0.76 +0.2
1,252,986 - IAI47_06155 0.76 +0.4
1,252,986 - IAI47_06155 0.76 -0.6
1,252,986 - IAI47_06155 0.76 +0.3
1,252,986 - IAI47_06155 0.76 +1.4
1,252,986 - IAI47_06155 0.76 -0.4
1,252,986 - IAI47_06155 0.76 -1.8
1,253,168 + -0.4
1,253,176 + -0.8
1,253,176 + -1.0
1,253,176 + +1.1
1,253,177 - -1.2
1,253,177 - +0.7
1,253,177 - +0.6
1,253,181 + +0.5
1,253,181 + -0.6
1,253,181 + +1.6
1,253,261 - -0.6
1,253,289 + IAI47_06160 0.12 -0.2
1,253,289 + IAI47_06160 0.12 -1.2
1,253,289 + IAI47_06160 0.12 -0.7
1,253,289 + IAI47_06160 0.12 +0.6
1,253,289 + IAI47_06160 0.12 +0.8
1,253,290 - IAI47_06160 0.12 -0.1
1,253,290 - IAI47_06160 0.12 -0.5
1,253,290 - IAI47_06160 0.12 -1.0
1,253,293 + IAI47_06160 0.13 -0.1
1,253,293 + IAI47_06160 0.13 -1.4
1,253,293 + IAI47_06160 0.13 -1.0
1,253,293 + IAI47_06160 0.13 +0.2
1,253,294 - IAI47_06160 0.13 +0.9
1,253,294 - IAI47_06160 0.13 -0.5
1,253,294 - IAI47_06160 0.13 +0.7
1,253,294 - IAI47_06160 0.13 +1.4
1,253,294 - IAI47_06160 0.13 -1.2
1,253,294 - IAI47_06160 0.13 -0.8
1,253,299 - IAI47_06160 0.13 -0.9
1,253,299 - IAI47_06160 0.13 +0.5
1,253,351 - IAI47_06160 0.20 -0.9
1,253,373 - IAI47_06160 0.23 -0.2
1,253,373 - IAI47_06160 0.23 -0.6
1,253,390 + IAI47_06160 0.25 +1.1
1,253,390 + IAI47_06160 0.25 +0.4
1,253,391 - IAI47_06160 0.25 -0.6
1,253,391 - IAI47_06160 0.25 -0.4
1,253,475 + IAI47_06160 0.35 -0.3
1,253,476 - IAI47_06160 0.35 -1.2
1,253,609 + IAI47_06160 0.52 +0.1
1,253,610 - IAI47_06160 0.52 -0.1
1,253,610 - IAI47_06160 0.52 +2.4
1,253,634 + IAI47_06160 0.55 -1.0
1,253,635 - IAI47_06160 0.55 +0.6
1,253,642 + IAI47_06160 0.56 +1.2
1,253,642 + IAI47_06160 0.56 +0.8
1,253,643 - IAI47_06160 0.56 +1.8
1,253,678 + IAI47_06160 0.60 -1.2
1,253,678 + IAI47_06160 0.60 -0.4
1,253,678 + IAI47_06160 0.60 -0.2
1,253,679 - IAI47_06160 0.61 -0.4
1,253,708 + IAI47_06160 0.64 +0.6
1,253,709 - IAI47_06160 0.64 +0.4
1,253,746 + IAI47_06160 0.69 -0.8
1,253,747 - IAI47_06160 0.69 +0.0
1,253,747 - IAI47_06160 0.69 +1.7
1,253,782 + IAI47_06160 0.73 +0.7
1,253,782 + IAI47_06160 0.73 -0.3
1,253,782 + IAI47_06160 0.73 -0.4
1,253,783 - IAI47_06160 0.74 +1.4
1,253,783 - IAI47_06160 0.74 -0.1
1,253,821 + IAI47_06160 0.78 -0.1
1,253,821 + IAI47_06160 0.78 +0.7
1,253,821 + IAI47_06160 0.78 +1.4
1,253,932 + +0.2
1,253,932 + -0.2
1,253,932 + +0.7
1,253,932 + -0.2
1,253,933 - -0.8
1,253,933 - +0.5
1,253,933 - -0.2
1,253,933 - +2.8
1,253,937 + -1.2
1,253,938 - -0.6
1,253,993 + +0.4
1,254,002 - -0.2
1,254,002 - -0.1
1,254,009 - -0.9
1,254,033 + +1.0
1,254,033 + +0.9
1,254,033 + +1.2
1,254,033 + +0.8
1,254,034 - -0.2
1,254,034 - -0.6
1,254,034 - +0.8
1,254,034 - +0.3
1,254,091 + IAI47_06165 0.14 +2.1
1,254,095 + IAI47_06165 0.15 +1.0
1,254,095 + IAI47_06165 0.15 +0.0
1,254,095 + IAI47_06165 0.15 +0.7
1,254,096 - IAI47_06165 0.15 -0.2
1,254,096 - IAI47_06165 0.15 +0.3
1,254,096 - IAI47_06165 0.15 +0.9
1,254,117 + IAI47_06165 0.19 +0.4
1,254,117 + IAI47_06165 0.19 +0.4
1,254,117 + IAI47_06165 0.19 -0.3
1,254,118 - IAI47_06165 0.19 -0.6
1,254,118 - IAI47_06165 0.19 -0.6
1,254,118 - IAI47_06165 0.19 +0.7
1,254,174 + IAI47_06165 0.29 +1.7
1,254,174 + IAI47_06165 0.29 +0.4
1,254,174 + IAI47_06165 0.29 +1.2
1,254,174 + IAI47_06165 0.29 +1.9
1,254,174 + IAI47_06165 0.29 +0.8
1,254,175 - IAI47_06165 0.29 -0.6

Or see this region's nucleotide sequence