Strain Fitness in Pantoea sp. MT58 around IAI47_04405

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04400 and IAI47_04405 are separated by 5 nucleotidesIAI47_04405 and IAI47_04410 are separated by 32 nucleotides IAI47_04400: IAI47_04400 - 3-deoxy-7-phosphoheptulonate synthase, at 921,837 to 922,916 _04400 IAI47_04405: IAI47_04405 - bifunctional chorismate mutase/prephenate dehydrogenase, at 922,922 to 924,043 _04405 IAI47_04410: IAI47_04410 - bifunctional chorismate mutase/prephenate dehydratase, at 924,076 to 925,251 _04410 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 921.965 kb on + strand, within IAI47_04400at 921.965 kb on + strand, within IAI47_04400at 921.965 kb on + strand, within IAI47_04400at 921.977 kb on + strand, within IAI47_04400at 921.977 kb on + strand, within IAI47_04400at 921.978 kb on - strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.053 kb on + strand, within IAI47_04400at 922.054 kb on - strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.101 kb on + strand, within IAI47_04400at 922.102 kb on - strand, within IAI47_04400at 922.102 kb on - strand, within IAI47_04400at 922.103 kb on + strand, within IAI47_04400at 922.104 kb on - strand, within IAI47_04400at 922.104 kb on - strand, within IAI47_04400at 922.139 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.173 kb on + strand, within IAI47_04400at 922.174 kb on - strand, within IAI47_04400at 922.179 kb on + strand, within IAI47_04400at 922.211 kb on + strand, within IAI47_04400at 922.211 kb on + strand, within IAI47_04400at 922.211 kb on + strand, within IAI47_04400at 922.212 kb on - strand, within IAI47_04400at 922.283 kb on + strand, within IAI47_04400at 922.284 kb on - strand, within IAI47_04400at 922.293 kb on + strand, within IAI47_04400at 922.531 kb on + strand, within IAI47_04400at 922.531 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.560 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.630 kb on + strand, within IAI47_04400at 922.751 kb on + strand, within IAI47_04400at 922.914 kb on + strandat 924.015 kb on + strandat 924.041 kb on + strandat 924.041 kb on + strandat 924.077 kb on + strandat 924.078 kb on - strandat 924.078 kb on - strandat 924.109 kb on + strandat 924.166 kb on + strandat 924.166 kb on + strandat 924.167 kb on - strandat 924.167 kb on - strandat 924.167 kb on - strandat 924.207 kb on + strand, within IAI47_04410at 924.224 kb on + strand, within IAI47_04410at 924.224 kb on + strand, within IAI47_04410at 924.224 kb on + strand, within IAI47_04410at 924.224 kb on + strand, within IAI47_04410at 924.224 kb on + strand, within IAI47_04410at 924.225 kb on - strand, within IAI47_04410at 924.225 kb on - strand, within IAI47_04410at 924.225 kb on - strand, within IAI47_04410at 924.225 kb on - strand, within IAI47_04410at 924.225 kb on - strand, within IAI47_04410at 924.279 kb on + strand, within IAI47_04410at 924.279 kb on + strand, within IAI47_04410at 924.280 kb on - strand, within IAI47_04410at 924.307 kb on + strand, within IAI47_04410at 924.307 kb on + strand, within IAI47_04410at 924.307 kb on + strand, within IAI47_04410at 924.307 kb on + strand, within IAI47_04410at 924.307 kb on + strand, within IAI47_04410at 924.307 kb on + strand, within IAI47_04410at 924.308 kb on - strand, within IAI47_04410at 924.308 kb on - strand, within IAI47_04410at 924.348 kb on + strand, within IAI47_04410at 924.411 kb on + strand, within IAI47_04410at 924.447 kb on + strand, within IAI47_04410at 924.448 kb on - strand, within IAI47_04410at 924.470 kb on + strand, within IAI47_04410at 924.496 kb on + strand, within IAI47_04410at 924.496 kb on + strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.553 kb on - strand, within IAI47_04410at 924.553 kb on - strand, within IAI47_04410at 924.561 kb on + strand, within IAI47_04410at 924.562 kb on - strand, within IAI47_04410at 924.562 kb on - strand, within IAI47_04410at 924.563 kb on + strand, within IAI47_04410at 924.563 kb on + strand, within IAI47_04410at 924.564 kb on - strand, within IAI47_04410at 924.564 kb on - strand, within IAI47_04410at 924.591 kb on + strand, within IAI47_04410at 924.592 kb on - strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.691 kb on - strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.744 kb on - strand, within IAI47_04410at 924.744 kb on - strand, within IAI47_04410at 924.794 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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921,965 + IAI47_04400 0.12 -0.0
921,965 + IAI47_04400 0.12 +0.3
921,965 + IAI47_04400 0.12 +0.4
921,977 + IAI47_04400 0.13 +2.7
921,977 + IAI47_04400 0.13 -1.2
921,978 - IAI47_04400 0.13 -0.0
922,053 + IAI47_04400 0.20 -1.3
922,053 + IAI47_04400 0.20 -0.1
922,053 + IAI47_04400 0.20 +0.8
922,053 + IAI47_04400 0.20 +0.4
922,054 - IAI47_04400 0.20 -2.4
922,101 + IAI47_04400 0.24 -0.2
922,101 + IAI47_04400 0.24 -0.1
922,101 + IAI47_04400 0.24 -0.2
922,101 + IAI47_04400 0.24 +3.0
922,101 + IAI47_04400 0.24 -0.6
922,102 - IAI47_04400 0.25 -2.4
922,102 - IAI47_04400 0.25 -1.6
922,103 + IAI47_04400 0.25 +0.7
922,104 - IAI47_04400 0.25 -0.2
922,104 - IAI47_04400 0.25 -1.2
922,139 + IAI47_04400 0.28 +0.7
922,173 + IAI47_04400 0.31 +0.2
922,173 + IAI47_04400 0.31 +0.4
922,173 + IAI47_04400 0.31 +0.8
922,173 + IAI47_04400 0.31 +0.4
922,173 + IAI47_04400 0.31 -1.2
922,173 + IAI47_04400 0.31 -0.6
922,173 + IAI47_04400 0.31 -0.6
922,174 - IAI47_04400 0.31 -0.6
922,179 + IAI47_04400 0.32 -1.2
922,211 + IAI47_04400 0.35 +1.7
922,211 + IAI47_04400 0.35 -0.0
922,211 + IAI47_04400 0.35 -0.6
922,212 - IAI47_04400 0.35 +0.4
922,283 + IAI47_04400 0.41 -1.2
922,284 - IAI47_04400 0.41 -0.4
922,293 + IAI47_04400 0.42 -0.2
922,531 + IAI47_04400 0.64 -1.6
922,531 + IAI47_04400 0.64 +1.6
922,560 + IAI47_04400 0.67 +1.4
922,560 + IAI47_04400 0.67 -0.3
922,560 + IAI47_04400 0.67 -1.9
922,560 + IAI47_04400 0.67 +0.4
922,560 + IAI47_04400 0.67 +0.1
922,630 + IAI47_04400 0.73 +0.3
922,630 + IAI47_04400 0.73 +0.4
922,630 + IAI47_04400 0.73 +0.8
922,630 + IAI47_04400 0.73 +0.4
922,751 + IAI47_04400 0.85 +0.4
922,914 + -2.4
924,015 + -2.2
924,041 + +0.1
924,041 + -0.6
924,077 + -1.5
924,078 - -0.0
924,078 - +0.7
924,109 + +0.6
924,166 + -1.9
924,166 + -1.9
924,167 - +1.4
924,167 - -1.9
924,167 - -0.6
924,207 + IAI47_04410 0.11 -1.2
924,224 + IAI47_04410 0.13 -0.6
924,224 + IAI47_04410 0.13 -0.4
924,224 + IAI47_04410 0.13 -0.2
924,224 + IAI47_04410 0.13 -1.5
924,224 + IAI47_04410 0.13 -0.9
924,225 - IAI47_04410 0.13 +0.4
924,225 - IAI47_04410 0.13 -1.2
924,225 - IAI47_04410 0.13 -0.8
924,225 - IAI47_04410 0.13 +2.6
924,225 - IAI47_04410 0.13 +0.2
924,279 + IAI47_04410 0.17 -1.8
924,279 + IAI47_04410 0.17 -3.1
924,280 - IAI47_04410 0.17 -0.9
924,307 + IAI47_04410 0.20 -3.3
924,307 + IAI47_04410 0.20 -2.8
924,307 + IAI47_04410 0.20 -2.6
924,307 + IAI47_04410 0.20 -1.2
924,307 + IAI47_04410 0.20 -2.8
924,307 + IAI47_04410 0.20 -4.2
924,308 - IAI47_04410 0.20 +0.4
924,308 - IAI47_04410 0.20 -1.1
924,348 + IAI47_04410 0.23 +1.1
924,411 + IAI47_04410 0.28 -4.0
924,447 + IAI47_04410 0.32 -3.1
924,448 - IAI47_04410 0.32 -0.6
924,470 + IAI47_04410 0.34 -3.1
924,496 + IAI47_04410 0.36 -3.4
924,496 + IAI47_04410 0.36 -4.9
924,497 - IAI47_04410 0.36 -1.6
924,497 - IAI47_04410 0.36 -3.1
924,497 - IAI47_04410 0.36 -1.9
924,497 - IAI47_04410 0.36 -2.6
924,497 - IAI47_04410 0.36 -3.9
924,497 - IAI47_04410 0.36 -1.2
924,497 - IAI47_04410 0.36 -1.6
924,497 - IAI47_04410 0.36 -1.2
924,510 + IAI47_04410 0.37 -3.8
924,510 + IAI47_04410 0.37 -0.6
924,510 + IAI47_04410 0.37 -3.7
924,510 + IAI47_04410 0.37 -3.5
924,510 + IAI47_04410 0.37 -1.2
924,510 + IAI47_04410 0.37 -3.9
924,510 + IAI47_04410 0.37 -1.2
924,510 + IAI47_04410 0.37 -2.8
924,510 + IAI47_04410 0.37 -1.6
924,510 + IAI47_04410 0.37 -0.6
924,511 - IAI47_04410 0.37 -0.6
924,511 - IAI47_04410 0.37 -1.6
924,511 - IAI47_04410 0.37 -2.6
924,511 - IAI47_04410 0.37 -3.1
924,511 - IAI47_04410 0.37 -2.6
924,511 - IAI47_04410 0.37 -2.2
924,511 - IAI47_04410 0.37 -1.6
924,552 + IAI47_04410 0.40 +0.4
924,552 + IAI47_04410 0.40 -1.6
924,552 + IAI47_04410 0.40 -2.4
924,553 - IAI47_04410 0.41 -1.6
924,553 - IAI47_04410 0.41 -1.6
924,561 + IAI47_04410 0.41 -3.5
924,562 - IAI47_04410 0.41 -3.5
924,562 - IAI47_04410 0.41 -4.2
924,563 + IAI47_04410 0.41 -2.2
924,563 + IAI47_04410 0.41 -2.2
924,564 - IAI47_04410 0.41 -2.2
924,564 - IAI47_04410 0.41 -2.4
924,591 + IAI47_04410 0.44 -1.9
924,592 - IAI47_04410 0.44 -2.8
924,594 + IAI47_04410 0.44 -3.2
924,594 + IAI47_04410 0.44 -3.2
924,594 + IAI47_04410 0.44 -2.2
924,594 + IAI47_04410 0.44 -2.4
924,595 - IAI47_04410 0.44 +0.4
924,595 - IAI47_04410 0.44 -3.3
924,595 - IAI47_04410 0.44 -1.2
924,632 + IAI47_04410 0.47 -1.6
924,632 + IAI47_04410 0.47 -3.3
924,632 + IAI47_04410 0.47 -2.4
924,632 + IAI47_04410 0.47 -3.1
924,632 + IAI47_04410 0.47 -1.6
924,633 - IAI47_04410 0.47 -1.6
924,633 - IAI47_04410 0.47 -2.9
924,633 - IAI47_04410 0.47 -2.9
924,633 - IAI47_04410 0.47 -3.1
924,633 - IAI47_04410 0.47 -2.6
924,690 + IAI47_04410 0.52 -1.9
924,690 + IAI47_04410 0.52 -1.9
924,690 + IAI47_04410 0.52 -3.1
924,690 + IAI47_04410 0.52 -3.2
924,690 + IAI47_04410 0.52 -2.4
924,690 + IAI47_04410 0.52 -2.4
924,691 - IAI47_04410 0.52 -2.8
924,694 + IAI47_04410 0.53 -3.4
924,694 + IAI47_04410 0.53 -4.5
924,694 + IAI47_04410 0.53 -2.4
924,694 + IAI47_04410 0.53 -2.9
924,694 + IAI47_04410 0.53 -4.0
924,694 + IAI47_04410 0.53 -3.9
924,694 + IAI47_04410 0.53 -4.2
924,694 + IAI47_04410 0.53 -1.6
924,694 + IAI47_04410 0.53 -3.1
924,694 + IAI47_04410 0.53 -3.6
924,694 + IAI47_04410 0.53 -5.4
924,695 - IAI47_04410 0.53 -1.9
924,695 - IAI47_04410 0.53 -2.2
924,695 - IAI47_04410 0.53 -1.9
924,695 - IAI47_04410 0.53 -4.4
924,695 - IAI47_04410 0.53 -2.8
924,695 - IAI47_04410 0.53 -2.6
924,695 - IAI47_04410 0.53 -3.9
924,695 - IAI47_04410 0.53 -2.6
924,695 - IAI47_04410 0.53 -2.4
924,695 - IAI47_04410 0.53 -3.2
924,695 - IAI47_04410 0.53 -5.3
924,695 - IAI47_04410 0.53 -1.6
924,714 + IAI47_04410 0.54 -1.2
924,714 + IAI47_04410 0.54 -1.6
924,714 + IAI47_04410 0.54 -1.9
924,714 + IAI47_04410 0.54 -2.6
924,715 - IAI47_04410 0.54 -2.6
924,715 - IAI47_04410 0.54 -2.4
924,715 - IAI47_04410 0.54 -2.9
924,715 - IAI47_04410 0.54 +0.4
924,715 - IAI47_04410 0.54 -1.6
924,743 + IAI47_04410 0.57 -2.8
924,743 + IAI47_04410 0.57 -1.9
924,743 + IAI47_04410 0.57 -1.6
924,744 - IAI47_04410 0.57 -3.6
924,744 - IAI47_04410 0.57 -1.9
924,794 + IAI47_04410 0.61 -2.4
924,884 + IAI47_04410 0.69 -1.2
924,884 + IAI47_04410 0.69 -1.9
924,884 + IAI47_04410 0.69 +0.4
924,884 + IAI47_04410 0.69 -0.6
924,884 + IAI47_04410 0.69 -4.2
924,885 - IAI47_04410 0.69 -1.9
924,885 - IAI47_04410 0.69 -1.9
924,885 - IAI47_04410 0.69 -1.2
925,037 + IAI47_04410 0.82 -2.6
925,037 + IAI47_04410 0.82 -2.2
925,037 + IAI47_04410 0.82 -3.3
925,037 + IAI47_04410 0.82 -3.5
925,037 + IAI47_04410 0.82 -1.2
925,037 + IAI47_04410 0.82 -2.2
925,037 + IAI47_04410 0.82 -1.9
925,037 + IAI47_04410 0.82 -1.6
925,038 - IAI47_04410 0.82 +0.4
925,038 - IAI47_04410 0.82 -1.6
925,038 - IAI47_04410 0.82 -1.2

Or see this region's nucleotide sequence