Strain Fitness in Pantoea sp. MT58 around IAI47_04220

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04215 and IAI47_04220 are separated by 191 nucleotidesIAI47_04220 and IAI47_04225 overlap by 7 nucleotidesIAI47_04225 and IAI47_04230 are separated by 162 nucleotides IAI47_04215: IAI47_04215 - tRNA pseudouridine(13) synthase TruD, at 884,354 to 885,394 _04215 IAI47_04220: IAI47_04220 - 5'/3'-nucleotidase SurE, at 885,586 to 886,347 _04220 IAI47_04225: IAI47_04225 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 886,341 to 886,967 _04225 IAI47_04230: IAI47_04230 - murein hydrolase activator NlpD, at 887,130 to 888,230 _04230 Position (kb) 885 886 887Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 884.653 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.699 kb on - strand, within IAI47_04215at 884.699 kb on - strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.817 kb on - strand, within IAI47_04215at 884.817 kb on - strand, within IAI47_04215at 884.817 kb on - strand, within IAI47_04215at 884.851 kb on + strand, within IAI47_04215at 884.852 kb on - strand, within IAI47_04215at 884.950 kb on + strand, within IAI47_04215at 884.950 kb on + strand, within IAI47_04215at 884.951 kb on - strand, within IAI47_04215at 884.951 kb on - strand, within IAI47_04215at 885.191 kb on - strand, within IAI47_04215at 885.191 kb on - strand, within IAI47_04215at 885.266 kb on - strand, within IAI47_04215at 885.392 kb on + strandat 885.392 kb on + strandat 885.392 kb on + strandat 885.393 kb on - strandat 885.393 kb on - strandat 885.393 kb on - strandat 885.410 kb on + strandat 885.411 kb on - strandat 885.425 kb on + strandat 885.425 kb on + strandat 885.425 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.465 kb on + strandat 885.466 kb on - strandat 885.466 kb on - strandat 885.488 kb on + strandat 885.488 kb on + strandat 885.488 kb on + strandat 885.489 kb on - strandat 885.489 kb on - strandat 885.491 kb on - strandat 885.534 kb on + strandat 885.534 kb on + strandat 885.593 kb on + strandat 885.631 kb on - strandat 885.711 kb on + strand, within IAI47_04220at 885.711 kb on + strand, within IAI47_04220at 885.711 kb on + strand, within IAI47_04220at 885.742 kb on - strand, within IAI47_04220at 885.747 kb on + strand, within IAI47_04220at 885.748 kb on - strand, within IAI47_04220at 885.802 kb on + strand, within IAI47_04220at 885.802 kb on + strand, within IAI47_04220at 885.803 kb on - strand, within IAI47_04220at 885.859 kb on - strand, within IAI47_04220at 885.859 kb on - strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.893 kb on - strand, within IAI47_04220at 885.901 kb on - strand, within IAI47_04220at 885.976 kb on + strand, within IAI47_04220at 886.056 kb on + strand, within IAI47_04220at 886.167 kb on + strand, within IAI47_04220at 886.168 kb on - strand, within IAI47_04220at 886.168 kb on - strand, within IAI47_04220at 886.175 kb on - strand, within IAI47_04220at 886.175 kb on - strand, within IAI47_04220at 886.175 kb on - strand, within IAI47_04220at 886.181 kb on + strand, within IAI47_04220at 886.182 kb on - strand, within IAI47_04220at 886.182 kb on - strand, within IAI47_04220at 886.182 kb on - strand, within IAI47_04220at 886.246 kb on + strandat 886.421 kb on + strand, within IAI47_04225at 886.467 kb on - strand, within IAI47_04225at 886.467 kb on - strand, within IAI47_04225at 886.467 kb on - strand, within IAI47_04225at 886.467 kb on - strand, within IAI47_04225at 886.489 kb on + strand, within IAI47_04225at 886.489 kb on + strand, within IAI47_04225at 886.489 kb on + strand, within IAI47_04225at 886.489 kb on + strand, within IAI47_04225at 886.489 kb on + strand, within IAI47_04225at 886.489 kb on + strand, within IAI47_04225at 886.490 kb on - strand, within IAI47_04225at 886.490 kb on - strand, within IAI47_04225at 886.490 kb on - strand, within IAI47_04225at 886.493 kb on + strand, within IAI47_04225at 886.494 kb on - strand, within IAI47_04225at 886.513 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.524 kb on + strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.525 kb on - strand, within IAI47_04225at 886.559 kb on + strand, within IAI47_04225at 886.641 kb on + strand, within IAI47_04225at 886.679 kb on + strand, within IAI47_04225at 886.718 kb on + strand, within IAI47_04225at 886.719 kb on - strand, within IAI47_04225at 886.775 kb on + strand, within IAI47_04225at 886.775 kb on + strand, within IAI47_04225at 886.775 kb on + strand, within IAI47_04225at 886.775 kb on + strand, within IAI47_04225at 886.775 kb on + strand, within IAI47_04225at 886.775 kb on + strand, within IAI47_04225at 886.776 kb on - strand, within IAI47_04225at 886.776 kb on - strand, within IAI47_04225at 886.817 kb on - strand, within IAI47_04225at 886.817 kb on - strand, within IAI47_04225at 886.841 kb on + strand, within IAI47_04225at 886.841 kb on + strand, within IAI47_04225at 886.841 kb on + strand, within IAI47_04225at 886.841 kb on + strand, within IAI47_04225at 886.841 kb on + strand, within IAI47_04225at 886.842 kb on - strand, within IAI47_04225at 886.842 kb on - strand, within IAI47_04225at 886.842 kb on - strand, within IAI47_04225at 886.842 kb on - strand, within IAI47_04225at 886.842 kb on - strand, within IAI47_04225at 886.873 kb on + strand, within IAI47_04225at 886.874 kb on - strand, within IAI47_04225at 886.949 kb on - strandat 886.977 kb on + strandat 887.008 kb on + strandat 887.008 kb on + strandat 887.008 kb on + strandat 887.008 kb on + strandat 887.009 kb on - strandat 887.009 kb on - strandat 887.009 kb on - strandat 887.009 kb on - strandat 887.009 kb on - strandat 887.009 kb on - strandat 887.009 kb on - strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.021 kb on + strandat 887.022 kb on - strandat 887.022 kb on - strandat 887.022 kb on - strandat 887.022 kb on - strandat 887.022 kb on - strandat 887.022 kb on - strandat 887.022 kb on - strandat 887.024 kb on + strandat 887.025 kb on - strandat 887.033 kb on + strandat 887.087 kb on + strandat 887.088 kb on - strandat 887.088 kb on - strandat 887.088 kb on - strandat 887.101 kb on + strandat 887.101 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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884,653 + IAI47_04215 0.29 +0.8
884,698 + IAI47_04215 0.33 +0.4
884,698 + IAI47_04215 0.33 -0.4
884,698 + IAI47_04215 0.33 -1.5
884,698 + IAI47_04215 0.33 +0.2
884,698 + IAI47_04215 0.33 -0.6
884,698 + IAI47_04215 0.33 -0.1
884,699 - IAI47_04215 0.33 +1.4
884,699 - IAI47_04215 0.33 -0.2
884,816 + IAI47_04215 0.44 -0.0
884,816 + IAI47_04215 0.44 -0.8
884,816 + IAI47_04215 0.44 +0.2
884,816 + IAI47_04215 0.44 +1.4
884,816 + IAI47_04215 0.44 +0.6
884,816 + IAI47_04215 0.44 -1.7
884,817 - IAI47_04215 0.44 -0.7
884,817 - IAI47_04215 0.44 -1.4
884,817 - IAI47_04215 0.44 -0.9
884,851 + IAI47_04215 0.48 +0.2
884,852 - IAI47_04215 0.48 +1.5
884,950 + IAI47_04215 0.57 -0.2
884,950 + IAI47_04215 0.57 +0.4
884,951 - IAI47_04215 0.57 +0.8
884,951 - IAI47_04215 0.57 -0.4
885,191 - IAI47_04215 0.80 -0.8
885,191 - IAI47_04215 0.80 +0.7
885,266 - IAI47_04215 0.88 -0.6
885,392 + +0.4
885,392 + +0.8
885,392 + -0.8
885,393 - -0.5
885,393 - +0.9
885,393 - -0.6
885,410 + +0.7
885,411 - -0.6
885,425 + +0.1
885,425 + +0.9
885,425 + -0.3
885,459 + -2.4
885,459 + -1.2
885,459 + -0.6
885,459 + +1.1
885,459 + +0.1
885,460 - -0.2
885,460 - +1.3
885,460 - +0.2
885,460 - -0.9
885,460 - +0.4
885,460 - +0.1
885,465 + -1.9
885,466 - -0.1
885,466 - -0.3
885,488 + -1.2
885,488 + -0.7
885,488 + -0.2
885,489 - -1.2
885,489 - -0.6
885,491 - +0.4
885,534 + -0.1
885,534 + +0.1
885,593 + -1.2
885,631 - -0.9
885,711 + IAI47_04220 0.16 -1.9
885,711 + IAI47_04220 0.16 -0.9
885,711 + IAI47_04220 0.16 +0.2
885,742 - IAI47_04220 0.20 +0.0
885,747 + IAI47_04220 0.21 -0.3
885,748 - IAI47_04220 0.21 -0.8
885,802 + IAI47_04220 0.28 +0.4
885,802 + IAI47_04220 0.28 +0.4
885,803 - IAI47_04220 0.28 -1.6
885,859 - IAI47_04220 0.36 -0.2
885,859 - IAI47_04220 0.36 -1.4
885,892 + IAI47_04220 0.40 -1.0
885,892 + IAI47_04220 0.40 +0.4
885,892 + IAI47_04220 0.40 -0.4
885,892 + IAI47_04220 0.40 +1.4
885,893 - IAI47_04220 0.40 -0.9
885,901 - IAI47_04220 0.41 +0.4
885,976 + IAI47_04220 0.51 +1.0
886,056 + IAI47_04220 0.62 +0.1
886,167 + IAI47_04220 0.76 -2.1
886,168 - IAI47_04220 0.76 -0.8
886,168 - IAI47_04220 0.76 -0.3
886,175 - IAI47_04220 0.77 -0.0
886,175 - IAI47_04220 0.77 -0.2
886,175 - IAI47_04220 0.77 +1.7
886,181 + IAI47_04220 0.78 +0.4
886,182 - IAI47_04220 0.78 +0.4
886,182 - IAI47_04220 0.78 -0.5
886,182 - IAI47_04220 0.78 -1.0
886,246 + -0.6
886,421 + IAI47_04225 0.13 +1.4
886,467 - IAI47_04225 0.20 -0.8
886,467 - IAI47_04225 0.20 -0.9
886,467 - IAI47_04225 0.20 -1.6
886,467 - IAI47_04225 0.20 -1.2
886,489 + IAI47_04225 0.24 -1.5
886,489 + IAI47_04225 0.24 +0.1
886,489 + IAI47_04225 0.24 -0.3
886,489 + IAI47_04225 0.24 -2.0
886,489 + IAI47_04225 0.24 +2.1
886,489 + IAI47_04225 0.24 +0.4
886,490 - IAI47_04225 0.24 -1.6
886,490 - IAI47_04225 0.24 -0.8
886,490 - IAI47_04225 0.24 -0.6
886,493 + IAI47_04225 0.24 -1.2
886,494 - IAI47_04225 0.24 +0.6
886,513 + IAI47_04225 0.27 -2.1
886,524 + IAI47_04225 0.29 +1.1
886,524 + IAI47_04225 0.29 -1.2
886,524 + IAI47_04225 0.29 -1.6
886,524 + IAI47_04225 0.29 -1.8
886,524 + IAI47_04225 0.29 -0.7
886,524 + IAI47_04225 0.29 -3.1
886,524 + IAI47_04225 0.29 +0.4
886,524 + IAI47_04225 0.29 -1.9
886,524 + IAI47_04225 0.29 -0.8
886,524 + IAI47_04225 0.29 -1.1
886,524 + IAI47_04225 0.29 -2.4
886,524 + IAI47_04225 0.29 -0.9
886,524 + IAI47_04225 0.29 +1.0
886,524 + IAI47_04225 0.29 -0.9
886,524 + IAI47_04225 0.29 -0.9
886,524 + IAI47_04225 0.29 -1.1
886,524 + IAI47_04225 0.29 -2.1
886,524 + IAI47_04225 0.29 -1.6
886,524 + IAI47_04225 0.29 -1.3
886,524 + IAI47_04225 0.29 +0.4
886,524 + IAI47_04225 0.29 -0.0
886,524 + IAI47_04225 0.29 +1.4
886,525 - IAI47_04225 0.29 -2.8
886,525 - IAI47_04225 0.29 -0.9
886,525 - IAI47_04225 0.29 -0.3
886,525 - IAI47_04225 0.29 -1.9
886,525 - IAI47_04225 0.29 -0.7
886,525 - IAI47_04225 0.29 -1.6
886,525 - IAI47_04225 0.29 -0.5
886,525 - IAI47_04225 0.29 -1.3
886,525 - IAI47_04225 0.29 +1.0
886,525 - IAI47_04225 0.29 +0.6
886,525 - IAI47_04225 0.29 -0.6
886,525 - IAI47_04225 0.29 -0.5
886,525 - IAI47_04225 0.29 -0.5
886,525 - IAI47_04225 0.29 -1.2
886,525 - IAI47_04225 0.29 -0.7
886,525 - IAI47_04225 0.29 -2.8
886,525 - IAI47_04225 0.29 -0.6
886,525 - IAI47_04225 0.29 -2.2
886,559 + IAI47_04225 0.35 -2.2
886,641 + IAI47_04225 0.48 +0.7
886,679 + IAI47_04225 0.54 +0.4
886,718 + IAI47_04225 0.60 -0.8
886,719 - IAI47_04225 0.60 -0.6
886,775 + IAI47_04225 0.69 -1.1
886,775 + IAI47_04225 0.69 -2.6
886,775 + IAI47_04225 0.69 -1.9
886,775 + IAI47_04225 0.69 -1.2
886,775 + IAI47_04225 0.69 -1.0
886,775 + IAI47_04225 0.69 -1.1
886,776 - IAI47_04225 0.69 -1.1
886,776 - IAI47_04225 0.69 -1.2
886,817 - IAI47_04225 0.76 -2.2
886,817 - IAI47_04225 0.76 -2.1
886,841 + IAI47_04225 0.80 -1.0
886,841 + IAI47_04225 0.80 -1.2
886,841 + IAI47_04225 0.80 +1.0
886,841 + IAI47_04225 0.80 -0.1
886,841 + IAI47_04225 0.80 -1.4
886,842 - IAI47_04225 0.80 +0.8
886,842 - IAI47_04225 0.80 -0.8
886,842 - IAI47_04225 0.80 -1.6
886,842 - IAI47_04225 0.80 -0.6
886,842 - IAI47_04225 0.80 -0.6
886,873 + IAI47_04225 0.85 -0.6
886,874 - IAI47_04225 0.85 -0.9
886,949 - +0.6
886,977 + -0.6
887,008 + -0.5
887,008 + +0.3
887,008 + -0.4
887,008 + +1.1
887,009 - -0.0
887,009 - -0.6
887,009 - +0.4
887,009 - -0.8
887,009 - -1.6
887,009 - +0.8
887,009 - -0.2
887,021 + +0.4
887,021 + -0.1
887,021 + +1.1
887,021 + +0.9
887,021 + +0.4
887,021 + +0.4
887,021 + -0.7
887,021 + +0.3
887,022 - -1.2
887,022 - -0.4
887,022 - -0.5
887,022 - -1.0
887,022 - +0.3
887,022 - +2.4
887,022 - +2.0
887,024 + -1.2
887,025 - +2.0
887,033 + +1.6
887,087 + +0.6
887,088 - +0.4
887,088 - -1.9
887,088 - -1.4
887,101 + -1.4
887,101 + -0.0

Or see this region's nucleotide sequence