Experiment: Ying_Nucleobase14 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03675 and IAI47_03680 are separated by 271 nucleotides IAI47_03680 and IAI47_03685 are separated by 314 nucleotides
IAI47_03675: IAI47_03675 - M48 family metallopeptidase, at 765,859 to 766,617
_03675
IAI47_03680: IAI47_03680 - transketolase, at 766,889 to 768,883
_03680
IAI47_03685: IAI47_03685 - erythrose-4-phosphate dehydrogenase, at 769,198 to 770,217
_03685
Position (kb) 766
767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 766.003 kb on - strand, within IAI47_03675 at 766.003 kb on - strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.029 kb on - strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.201 kb on - strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.293 kb on + strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.413 kb on - strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.467 kb on + strand, within IAI47_03675 at 766.468 kb on - strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.514 kb on + strand, within IAI47_03675 at 766.515 kb on - strand, within IAI47_03675 at 766.545 kb on + strand at 766.546 kb on - strand at 766.552 kb on + strand at 766.553 kb on - strand at 766.595 kb on - strand at 766.595 kb on - strand at 766.622 kb on + strand at 766.623 kb on - strand at 766.633 kb on + strand at 766.634 kb on - strand at 766.634 kb on - strand at 766.641 kb on + strand at 766.641 kb on + strand at 766.677 kb on + strand at 766.677 kb on + strand at 766.690 kb on + strand at 766.691 kb on - strand at 766.691 kb on - strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.715 kb on + strand at 766.764 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.774 kb on - strand at 766.774 kb on - strand at 766.774 kb on - strand at 766.795 kb on + strand at 766.795 kb on + strand at 766.795 kb on + strand at 766.795 kb on + strand at 766.869 kb on - strand at 766.901 kb on - strand at 766.930 kb on - strand at 766.933 kb on + strand at 766.933 kb on + strand at 766.933 kb on + strand at 766.934 kb on - strand at 766.934 kb on - strand at 766.934 kb on - strand at 766.934 kb on - strand at 767.005 kb on - strand at 767.077 kb on + strand at 767.103 kb on - strand, within IAI47_03680 at 767.195 kb on + strand, within IAI47_03680 at 767.195 kb on + strand, within IAI47_03680 at 767.195 kb on + strand, within IAI47_03680 at 767.196 kb on - strand, within IAI47_03680 at 767.196 kb on - strand, within IAI47_03680 at 767.201 kb on + strand, within IAI47_03680 at 767.201 kb on + strand, within IAI47_03680 at 767.202 kb on - strand, within IAI47_03680 at 767.202 kb on - strand, within IAI47_03680 at 767.322 kb on + strand, within IAI47_03680 at 767.323 kb on - strand, within IAI47_03680 at 767.323 kb on - strand, within IAI47_03680 at 767.323 kb on - strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.371 kb on + strand, within IAI47_03680 at 767.371 kb on + strand, within IAI47_03680 at 767.371 kb on + strand, within IAI47_03680 at 767.372 kb on - strand, within IAI47_03680 at 767.372 kb on - strand, within IAI47_03680 at 767.432 kb on + strand, within IAI47_03680 at 767.432 kb on + strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.446 kb on + strand, within IAI47_03680 at 767.447 kb on - strand, within IAI47_03680 at 767.447 kb on - strand, within IAI47_03680 at 767.511 kb on - strand, within IAI47_03680 at 767.511 kb on - strand, within IAI47_03680 at 767.535 kb on + strand, within IAI47_03680 at 767.536 kb on - strand, within IAI47_03680 at 767.563 kb on + strand, within IAI47_03680 at 767.564 kb on - strand, within IAI47_03680 at 767.564 kb on - strand, within IAI47_03680 at 767.564 kb on - strand, within IAI47_03680 at 767.743 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.760 kb on - strand, within IAI47_03680 at 767.760 kb on - strand, within IAI47_03680 at 767.829 kb on - strand, within IAI47_03680 at 767.829 kb on - strand, within IAI47_03680 at 767.864 kb on - strand, within IAI47_03680 at 767.893 kb on + strand, within IAI47_03680 at 767.893 kb on + strand, within IAI47_03680 at 767.893 kb on + strand, within IAI47_03680 at 767.894 kb on - strand, within IAI47_03680 at 767.894 kb on - strand, within IAI47_03680 at 767.962 kb on + strand, within IAI47_03680 at 767.963 kb on - strand, within IAI47_03680 at 767.963 kb on - strand, within IAI47_03680 at 768.011 kb on + strand, within IAI47_03680 at 768.011 kb on + strand, within IAI47_03680 at 768.052 kb on + strand, within IAI47_03680 at 768.053 kb on - strand, within IAI47_03680 at 768.067 kb on + strand, within IAI47_03680 at 768.068 kb on - strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.176 kb on + strand, within IAI47_03680 at 768.176 kb on + strand, within IAI47_03680 at 768.206 kb on + strand, within IAI47_03680 at 768.207 kb on - strand, within IAI47_03680 at 768.263 kb on + strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.379 kb on - strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.406 kb on + strand, within IAI47_03680 at 768.406 kb on + strand, within IAI47_03680 at 768.509 kb on + strand, within IAI47_03680 at 768.510 kb on - strand, within IAI47_03680 at 768.674 kb on + strand, within IAI47_03680 at 768.674 kb on + strand, within IAI47_03680 at 768.674 kb on + strand, within IAI47_03680 at 768.675 kb on - strand, within IAI47_03680 at 768.718 kb on + strand at 768.718 kb on + strand at 768.718 kb on + strand at 768.719 kb on - strand at 768.741 kb on - strand at 768.752 kb on + strand at 768.752 kb on + strand at 768.753 kb on - strand at 768.881 kb on + strand at 768.882 kb on - strand at 768.882 kb on - strand at 768.882 kb on - strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.885 kb on - strand at 768.924 kb on + strand at 768.925 kb on - strand at 768.958 kb on + strand at 768.958 kb on + strand at 768.959 kb on - strand at 768.959 kb on - strand at 768.969 kb on + strand at 768.969 kb on + strand at 768.970 kb on - strand at 768.973 kb on - strand at 769.012 kb on + strand at 769.012 kb on + strand at 769.057 kb on + strand at 769.058 kb on - strand at 769.133 kb on + strand at 769.206 kb on - strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.218 kb on - strand at 769.218 kb on - strand at 769.218 kb on - strand at 769.218 kb on - strand at 769.261 kb on + strand at 769.262 kb on - strand at 769.262 kb on - strand at 769.303 kb on - strand, within IAI47_03685 at 769.326 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.346 kb on - strand, within IAI47_03685 at 769.350 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.446 kb on - strand, within IAI47_03685 at 769.494 kb on + strand, within IAI47_03685 at 769.495 kb on - strand, within IAI47_03685 at 769.504 kb on + strand, within IAI47_03685 at 769.505 kb on - strand, within IAI47_03685 at 769.505 kb on - strand, within IAI47_03685 at 769.677 kb on + strand, within IAI47_03685 at 769.677 kb on + strand, within IAI47_03685 at 769.677 kb on + strand, within IAI47_03685 at 769.678 kb on - strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.690 kb on - strand, within IAI47_03685 at 769.690 kb on - strand, within IAI47_03685 at 769.690 kb on - strand, within IAI47_03685 at 769.777 kb on + strand, within IAI47_03685 at 769.778 kb on - strand, within IAI47_03685 at 769.834 kb on - strand, within IAI47_03685
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3 remove 766,003 - IAI47_03675 0.19 -0.7 766,003 - IAI47_03675 0.19 +0.4 766,028 + IAI47_03675 0.22 +1.0 766,028 + IAI47_03675 0.22 +1.4 766,028 + IAI47_03675 0.22 +0.8 766,028 + IAI47_03675 0.22 +1.4 766,029 - IAI47_03675 0.22 +0.5 766,034 + IAI47_03675 0.23 -0.0 766,034 + IAI47_03675 0.23 -0.6 766,034 + IAI47_03675 0.23 -0.6 766,034 + IAI47_03675 0.23 -1.2 766,034 + IAI47_03675 0.23 -0.3 766,034 + IAI47_03675 0.23 -1.9 766,035 - IAI47_03675 0.23 -0.3 766,035 - IAI47_03675 0.23 -0.7 766,035 - IAI47_03675 0.23 +0.4 766,035 - IAI47_03675 0.23 -1.0 766,035 - IAI47_03675 0.23 -0.3 766,035 - IAI47_03675 0.23 -0.4 766,035 - IAI47_03675 0.23 +0.3 766,176 - IAI47_03675 0.42 -1.1 766,176 - IAI47_03675 0.42 -0.3 766,176 - IAI47_03675 0.42 +1.2 766,176 - IAI47_03675 0.42 +1.1 766,194 + IAI47_03675 0.44 -0.2 766,194 + IAI47_03675 0.44 -0.0 766,195 - IAI47_03675 0.44 +1.0 766,195 - IAI47_03675 0.44 -0.1 766,195 - IAI47_03675 0.44 -1.2 766,200 + IAI47_03675 0.45 -0.6 766,200 + IAI47_03675 0.45 -0.5 766,200 + IAI47_03675 0.45 -0.8 766,200 + IAI47_03675 0.45 +0.4 766,201 - IAI47_03675 0.45 -0.3 766,266 + IAI47_03675 0.54 +0.4 766,266 + IAI47_03675 0.54 +0.7 766,267 - IAI47_03675 0.54 -0.0 766,267 - IAI47_03675 0.54 -0.4 766,267 - IAI47_03675 0.54 -1.0 766,267 - IAI47_03675 0.54 -0.0 766,284 - IAI47_03675 0.56 +1.4 766,284 - IAI47_03675 0.56 +1.7 766,293 + IAI47_03675 0.57 -0.2 766,294 - IAI47_03675 0.57 +0.1 766,294 - IAI47_03675 0.57 +0.2 766,338 - IAI47_03675 0.63 -0.6 766,338 - IAI47_03675 0.63 -0.5 766,344 + IAI47_03675 0.64 -0.2 766,344 + IAI47_03675 0.64 -0.2 766,344 + IAI47_03675 0.64 -1.0 766,345 - IAI47_03675 0.64 -0.3 766,345 - IAI47_03675 0.64 +0.4 766,345 - IAI47_03675 0.64 -1.9 766,346 + IAI47_03675 0.64 -0.6 766,346 + IAI47_03675 0.64 +1.1 766,346 + IAI47_03675 0.64 +0.2 766,346 + IAI47_03675 0.64 -1.2 766,346 + IAI47_03675 0.64 -0.9 766,347 - IAI47_03675 0.64 -1.2 766,347 - IAI47_03675 0.64 +1.7 766,347 - IAI47_03675 0.64 -1.0 766,347 - IAI47_03675 0.64 -0.6 766,347 - IAI47_03675 0.64 -0.3 766,368 + IAI47_03675 0.67 +0.3 766,368 + IAI47_03675 0.67 -0.3 766,368 + IAI47_03675 0.67 -0.6 766,368 + IAI47_03675 0.67 -0.6 766,368 + IAI47_03675 0.67 +0.9 766,369 - IAI47_03675 0.67 -0.6 766,369 - IAI47_03675 0.67 +0.9 766,369 - IAI47_03675 0.67 +0.4 766,369 - IAI47_03675 0.67 -1.4 766,369 - IAI47_03675 0.67 -0.4 766,371 + IAI47_03675 0.67 +1.2 766,371 + IAI47_03675 0.67 +0.4 766,372 - IAI47_03675 0.68 -0.4 766,372 - IAI47_03675 0.68 -0.2 766,396 - IAI47_03675 0.71 +2.0 766,396 - IAI47_03675 0.71 +0.6 766,396 - IAI47_03675 0.71 +0.4 766,412 + IAI47_03675 0.73 +0.5 766,412 + IAI47_03675 0.73 -1.6 766,413 - IAI47_03675 0.73 +0.2 766,440 + IAI47_03675 0.77 -0.1 766,440 + IAI47_03675 0.77 -0.3 766,440 + IAI47_03675 0.77 -1.6 766,440 + IAI47_03675 0.77 +1.0 766,441 - IAI47_03675 0.77 -0.8 766,441 - IAI47_03675 0.77 -0.6 766,467 + IAI47_03675 0.80 +1.1 766,468 - IAI47_03675 0.80 -1.3 766,483 + IAI47_03675 0.82 -1.4 766,483 + IAI47_03675 0.82 -0.8 766,484 - IAI47_03675 0.82 -0.1 766,484 - IAI47_03675 0.82 +1.4 766,503 + IAI47_03675 0.85 -0.8 766,503 + IAI47_03675 0.85 -0.8 766,503 + IAI47_03675 0.85 -0.5 766,503 + IAI47_03675 0.85 +0.8 766,504 - IAI47_03675 0.85 -0.1 766,504 - 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Or see this region's nucleotide sequence