Strain Fitness in Pantoea sp. MT58 around IAI47_02790

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02775 and IAI47_02780 are separated by 13 nucleotidesIAI47_02780 and IAI47_02785 are separated by 2 nucleotidesIAI47_02785 and IAI47_02790 are separated by 127 nucleotidesIAI47_02790 and IAI47_02795 are separated by 11 nucleotidesIAI47_02795 and IAI47_02800 are separated by 43 nucleotides IAI47_02775: IAI47_02775 - glycine dehydrogenase, at 575,720 to 576,055 _02775 IAI47_02780: IAI47_02780 - hypothetical protein, at 576,069 to 576,425 _02780 IAI47_02785: IAI47_02785 - DUF4312 family protein, at 576,428 to 576,727 _02785 IAI47_02790: IAI47_02790 - DUF4311 domain-containing protein, at 576,855 to 577,631 _02790 IAI47_02795: IAI47_02795 - DUF4310 family protein, at 577,643 to 578,284 _02795 IAI47_02800: IAI47_02800 - amidohydrolase/deacetylase family metallohydrolase, at 578,328 to 579,458 _02800 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 575.938 kb on + strand, within IAI47_02775at 575.938 kb on + strand, within IAI47_02775at 575.939 kb on - strand, within IAI47_02775at 575.939 kb on - strand, within IAI47_02775at 575.939 kb on - strand, within IAI47_02775at 576.028 kb on + strandat 576.029 kb on - strandat 576.029 kb on - strandat 576.053 kb on + strandat 576.054 kb on - strandat 576.054 kb on - strandat 576.054 kb on - strandat 576.054 kb on - strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.074 kb on - strandat 576.079 kb on + strandat 576.079 kb on + strandat 576.079 kb on + strandat 576.079 kb on + strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.097 kb on + strandat 576.101 kb on + strandat 576.101 kb on + strandat 576.101 kb on + strandat 576.102 kb on - strandat 576.102 kb on - strandat 576.120 kb on - strand, within IAI47_02780at 576.120 kb on - strand, within IAI47_02780at 576.176 kb on + strand, within IAI47_02780at 576.177 kb on - strand, within IAI47_02780at 576.177 kb on - strand, within IAI47_02780at 576.222 kb on - strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.279 kb on + strand, within IAI47_02780at 576.279 kb on + strand, within IAI47_02780at 576.280 kb on - strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.329 kb on + strand, within IAI47_02780at 576.329 kb on + strand, within IAI47_02780at 576.330 kb on - strand, within IAI47_02780at 576.347 kb on - strand, within IAI47_02780at 576.380 kb on - strand, within IAI47_02780at 576.380 kb on - strand, within IAI47_02780at 576.427 kb on + strandat 576.428 kb on - strandat 576.428 kb on - strandat 576.440 kb on + strandat 576.440 kb on + strandat 576.440 kb on + strandat 576.440 kb on + strandat 576.440 kb on + strandat 576.440 kb on + strandat 576.440 kb on + strandat 576.441 kb on - strandat 576.441 kb on - strandat 576.441 kb on - strandat 576.441 kb on - strandat 576.441 kb on - strandat 576.441 kb on - strandat 576.446 kb on - strandat 576.446 kb on - strandat 576.475 kb on + strand, within IAI47_02785at 576.712 kb on + strandat 576.713 kb on - strandat 576.725 kb on + strandat 576.726 kb on - strandat 576.726 kb on - strandat 576.741 kb on + strandat 576.742 kb on - strandat 576.793 kb on - strandat 576.829 kb on + strandat 576.829 kb on + strandat 576.830 kb on - strandat 576.846 kb on + strandat 576.846 kb on + strandat 576.847 kb on - strandat 576.847 kb on - strandat 576.847 kb on - strandat 576.848 kb on - strandat 576.974 kb on + strand, within IAI47_02790at 577.148 kb on + strand, within IAI47_02790at 577.149 kb on - strand, within IAI47_02790at 577.327 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.405 kb on + strand, within IAI47_02790at 577.406 kb on - strand, within IAI47_02790at 577.406 kb on - strand, within IAI47_02790at 577.406 kb on - strand, within IAI47_02790at 577.406 kb on - strand, within IAI47_02790at 577.406 kb on - strand, within IAI47_02790at 577.406 kb on - strand, within IAI47_02790at 577.442 kb on + strand, within IAI47_02790at 577.443 kb on - strand, within IAI47_02790at 577.487 kb on + strand, within IAI47_02790at 577.487 kb on + strand, within IAI47_02790at 577.554 kb on - strandat 577.629 kb on + strandat 577.629 kb on + strandat 577.630 kb on - strandat 577.654 kb on + strandat 577.655 kb on - strandat 577.655 kb on - strandat 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.736 kb on + strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.737 kb on - strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.739 kb on + strand, within IAI47_02795at 577.740 kb on - strand, within IAI47_02795at 577.740 kb on - strand, within IAI47_02795at 577.740 kb on - strand, within IAI47_02795at 577.740 kb on - strand, within IAI47_02795at 577.745 kb on + strand, within IAI47_02795at 577.814 kb on + strand, within IAI47_02795at 577.814 kb on + strand, within IAI47_02795at 577.861 kb on + strand, within IAI47_02795at 577.862 kb on - strand, within IAI47_02795at 578.024 kb on + strand, within IAI47_02795at 578.025 kb on - strand, within IAI47_02795at 578.030 kb on - strand, within IAI47_02795at 578.032 kb on + strand, within IAI47_02795at 578.033 kb on - strand, within IAI47_02795at 578.044 kb on + strand, within IAI47_02795at 578.076 kb on - strand, within IAI47_02795at 578.137 kb on + strand, within IAI47_02795at 578.204 kb on + strand, within IAI47_02795at 578.204 kb on + strand, within IAI47_02795at 578.205 kb on - strand, within IAI47_02795at 578.205 kb on - strand, within IAI47_02795at 578.205 kb on - strand, within IAI47_02795at 578.331 kb on + strandat 578.331 kb on + strandat 578.331 kb on + strandat 578.332 kb on - strandat 578.332 kb on - strandat 578.332 kb on - strandat 578.332 kb on - strandat 578.467 kb on - strand, within IAI47_02800at 578.505 kb on + strand, within IAI47_02800at 578.505 kb on + strand, within IAI47_02800at 578.523 kb on + strand, within IAI47_02800at 578.523 kb on + strand, within IAI47_02800at 578.523 kb on + strand, within IAI47_02800at 578.523 kb on + strand, within IAI47_02800at 578.523 kb on + strand, within IAI47_02800at 578.523 kb on + strand, within IAI47_02800at 578.524 kb on - strand, within IAI47_02800at 578.524 kb on - strand, within IAI47_02800at 578.524 kb on - strand, within IAI47_02800at 578.524 kb on - strand, within IAI47_02800at 578.524 kb on - strand, within IAI47_02800at 578.551 kb on + strand, within IAI47_02800at 578.551 kb on + strand, within IAI47_02800at 578.552 kb on - strand, within IAI47_02800at 578.616 kb on + strand, within IAI47_02800

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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575,938 + IAI47_02775 0.65 -0.4
575,938 + IAI47_02775 0.65 -0.1
575,939 - IAI47_02775 0.65 +2.1
575,939 - IAI47_02775 0.65 -0.8
575,939 - IAI47_02775 0.65 +0.4
576,028 + -0.4
576,029 - -1.9
576,029 - -0.4
576,053 + +1.2
576,054 - -2.1
576,054 - +1.2
576,054 - +0.6
576,054 - +1.8
576,073 + +0.1
576,073 + -0.2
576,073 + -2.2
576,073 + +1.4
576,073 + -1.0
576,073 + +0.9
576,074 - -3.1
576,079 + +0.0
576,079 + +0.7
576,079 + -1.4
576,079 + -1.0
576,080 - +0.8
576,080 - -0.9
576,080 - +0.4
576,080 - +0.9
576,080 - -1.0
576,080 - +0.4
576,097 + +0.4
576,101 + -2.4
576,101 + -0.3
576,101 + +0.8
576,102 - -0.3
576,102 - -1.9
576,120 - IAI47_02780 0.14 -0.4
576,120 - IAI47_02780 0.14 +0.2
576,176 + IAI47_02780 0.30 +0.6
576,177 - IAI47_02780 0.30 -0.2
576,177 - IAI47_02780 0.30 +0.2
576,222 - IAI47_02780 0.43 +0.8
576,273 + IAI47_02780 0.57 -1.4
576,273 + IAI47_02780 0.57 +1.4
576,273 + IAI47_02780 0.57 -0.5
576,273 + IAI47_02780 0.57 +1.6
576,273 + IAI47_02780 0.57 +0.4
576,274 - IAI47_02780 0.57 -1.2
576,274 - IAI47_02780 0.57 -1.6
576,274 - IAI47_02780 0.57 -0.0
576,274 - IAI47_02780 0.57 +1.2
576,274 - IAI47_02780 0.57 -0.0
576,274 - IAI47_02780 0.57 -0.6
576,274 - IAI47_02780 0.57 -1.6
576,274 - IAI47_02780 0.57 +0.1
576,274 - IAI47_02780 0.57 -0.9
576,274 - IAI47_02780 0.57 +0.3
576,274 - IAI47_02780 0.57 -0.3
576,279 + IAI47_02780 0.59 -0.1
576,279 + IAI47_02780 0.59 -0.6
576,280 - IAI47_02780 0.59 +0.1
576,296 + IAI47_02780 0.64 -1.0
576,296 + IAI47_02780 0.64 -1.2
576,296 + IAI47_02780 0.64 +1.0
576,296 + IAI47_02780 0.64 +1.4
576,296 + IAI47_02780 0.64 +0.4
576,297 - IAI47_02780 0.64 -1.4
576,297 - IAI47_02780 0.64 +0.1
576,297 - IAI47_02780 0.64 +1.5
576,297 - IAI47_02780 0.64 +0.4
576,329 + IAI47_02780 0.73 +1.4
576,329 + IAI47_02780 0.73 +0.4
576,330 - IAI47_02780 0.73 +0.4
576,347 - IAI47_02780 0.78 +1.2
576,380 - IAI47_02780 0.87 +0.2
576,380 - IAI47_02780 0.87 -0.6
576,427 + -0.3
576,428 - +0.1
576,428 - +0.2
576,440 + -0.1
576,440 + +0.4
576,440 + +1.6
576,440 + -1.8
576,440 + +1.0
576,440 + -0.6
576,440 + -0.2
576,441 - -0.6
576,441 - +1.0
576,441 - -2.2
576,441 - -1.6
576,441 - -0.2
576,441 - -0.6
576,446 - +0.2
576,446 - -0.8
576,475 + IAI47_02785 0.16 -1.4
576,712 + +2.7
576,713 - +1.4
576,725 + +0.7
576,726 - -0.3
576,726 - +1.0
576,741 + +0.4
576,742 - +2.1
576,793 - -0.9
576,829 + +1.2
576,829 + +1.1
576,830 - +0.1
576,846 + -1.6
576,846 + +0.8
576,847 - -3.2
576,847 - +0.4
576,847 - -0.2
576,848 - +0.2
576,974 + IAI47_02790 0.15 +0.4
577,148 + IAI47_02790 0.38 +0.4
577,149 - IAI47_02790 0.38 +0.4
577,327 + IAI47_02790 0.61 +0.4
577,405 + IAI47_02790 0.71 -0.1
577,405 + IAI47_02790 0.71 +0.2
577,405 + IAI47_02790 0.71 +1.2
577,405 + IAI47_02790 0.71 -0.9
577,405 + IAI47_02790 0.71 +1.5
577,405 + IAI47_02790 0.71 -0.3
577,405 + IAI47_02790 0.71 +1.0
577,405 + IAI47_02790 0.71 +0.4
577,405 + IAI47_02790 0.71 -0.2
577,405 + IAI47_02790 0.71 +0.7
577,406 - IAI47_02790 0.71 -0.2
577,406 - IAI47_02790 0.71 -0.6
577,406 - IAI47_02790 0.71 +0.1
577,406 - IAI47_02790 0.71 -0.3
577,406 - IAI47_02790 0.71 +0.8
577,406 - IAI47_02790 0.71 +0.8
577,442 + IAI47_02790 0.76 +1.2
577,443 - IAI47_02790 0.76 -1.1
577,487 + IAI47_02790 0.81 -0.8
577,487 + IAI47_02790 0.81 +1.7
577,554 - -0.4
577,629 + +1.3
577,629 + -0.2
577,630 - +0.4
577,654 + -0.2
577,655 - -1.2
577,655 - +0.7
577,736 + IAI47_02795 0.14 -0.2
577,736 + IAI47_02795 0.14 +0.8
577,736 + IAI47_02795 0.14 -0.4
577,736 + IAI47_02795 0.14 +0.4
577,736 + IAI47_02795 0.14 -0.4
577,736 + IAI47_02795 0.14 -0.6
577,736 + IAI47_02795 0.14 +0.0
577,736 + IAI47_02795 0.14 +0.1
577,736 + IAI47_02795 0.14 +1.4
577,736 + IAI47_02795 0.14 -1.5
577,736 + IAI47_02795 0.14 -0.1
577,736 + IAI47_02795 0.14 +0.7
577,736 + IAI47_02795 0.14 +0.8
577,736 + IAI47_02795 0.14 -0.5
577,736 + IAI47_02795 0.14 +1.3
577,736 + IAI47_02795 0.14 +1.4
577,736 + IAI47_02795 0.14 +1.2
577,736 + IAI47_02795 0.14 +0.2
577,737 - IAI47_02795 0.15 -0.2
577,737 - IAI47_02795 0.15 +0.6
577,737 - IAI47_02795 0.15 -0.4
577,737 - IAI47_02795 0.15 +1.4
577,737 - IAI47_02795 0.15 -0.6
577,737 - IAI47_02795 0.15 -0.8
577,737 - IAI47_02795 0.15 -0.4
577,737 - IAI47_02795 0.15 -0.6
577,737 - IAI47_02795 0.15 +1.0
577,737 - IAI47_02795 0.15 -1.1
577,737 - IAI47_02795 0.15 +0.2
577,737 - IAI47_02795 0.15 -1.0
577,737 - IAI47_02795 0.15 -0.6
577,737 - IAI47_02795 0.15 -1.1
577,737 - IAI47_02795 0.15 -1.1
577,737 - IAI47_02795 0.15 +0.9
577,737 - IAI47_02795 0.15 +1.0
577,737 - IAI47_02795 0.15 +2.0
577,737 - IAI47_02795 0.15 +0.8
577,737 - IAI47_02795 0.15 +0.1
577,737 - IAI47_02795 0.15 +1.3
577,737 - IAI47_02795 0.15 +0.1
577,737 - IAI47_02795 0.15 -0.5
577,737 - IAI47_02795 0.15 +1.0
577,737 - IAI47_02795 0.15 -0.4
577,737 - IAI47_02795 0.15 -0.9
577,737 - IAI47_02795 0.15 +1.4
577,739 + IAI47_02795 0.15 -1.2
577,739 + IAI47_02795 0.15 +0.1
577,739 + IAI47_02795 0.15 +0.5
577,739 + IAI47_02795 0.15 +0.1
577,739 + IAI47_02795 0.15 +0.6
577,739 + IAI47_02795 0.15 -0.5
577,739 + IAI47_02795 0.15 +0.8
577,739 + IAI47_02795 0.15 +0.6
577,740 - IAI47_02795 0.15 +3.0
577,740 - IAI47_02795 0.15 +0.4
577,740 - IAI47_02795 0.15 +0.6
577,740 - IAI47_02795 0.15 -0.6
577,745 + IAI47_02795 0.16 +0.4
577,814 + IAI47_02795 0.27 -0.4
577,814 + IAI47_02795 0.27 -0.1
577,861 + IAI47_02795 0.34 -0.3
577,862 - IAI47_02795 0.34 +1.0
578,024 + IAI47_02795 0.59 +1.2
578,025 - IAI47_02795 0.60 +0.4
578,030 - IAI47_02795 0.60 +0.1
578,032 + IAI47_02795 0.61 -1.3
578,033 - IAI47_02795 0.61 +0.5
578,044 + IAI47_02795 0.62 -0.8
578,076 - IAI47_02795 0.67 +0.0
578,137 + IAI47_02795 0.77 +0.1
578,204 + IAI47_02795 0.87 -0.6
578,204 + IAI47_02795 0.87 +0.4
578,205 - IAI47_02795 0.88 -1.7
578,205 - IAI47_02795 0.88 -0.6
578,205 - IAI47_02795 0.88 +1.7
578,331 + -0.2
578,331 + -0.4
578,331 + +0.4
578,332 - -0.4
578,332 - -0.2
578,332 - +0.4
578,332 - -0.4
578,467 - IAI47_02800 0.12 +0.4
578,505 + IAI47_02800 0.16 +0.4
578,505 + IAI47_02800 0.16 +1.5
578,523 + IAI47_02800 0.17 +0.0
578,523 + IAI47_02800 0.17 +2.0
578,523 + IAI47_02800 0.17 +0.6
578,523 + IAI47_02800 0.17 +0.0
578,523 + IAI47_02800 0.17 +0.0
578,523 + IAI47_02800 0.17 -0.9
578,524 - IAI47_02800 0.17 -0.7
578,524 - IAI47_02800 0.17 +0.2
578,524 - IAI47_02800 0.17 +0.5
578,524 - IAI47_02800 0.17 -0.6
578,524 - IAI47_02800 0.17 -0.2
578,551 + IAI47_02800 0.20 -1.5
578,551 + IAI47_02800 0.20 +0.4
578,552 - IAI47_02800 0.20 -0.5
578,616 + IAI47_02800 0.25 -0.2

Or see this region's nucleotide sequence