Strain Fitness in Pantoea sp. MT58 around IAI47_02640

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02635 and IAI47_02640 overlap by 27 nucleotidesIAI47_02640 and IAI47_02645 are separated by 56 nucleotides IAI47_02635: IAI47_02635 - isovaleryl-CoA dehydrogenase, at 546,378 to 548,006 _02635 IAI47_02640: IAI47_02640 - biofilm peroxide resistance protein BsmA, at 547,980 to 548,306 _02640 IAI47_02645: IAI47_02645 - Cache 3/Cache 2 fusion domain-containing protein, at 548,363 to 550,294 _02645 Position (kb) 547 548 549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 547.011 kb on + strand, within IAI47_02635at 547.012 kb on - strand, within IAI47_02635at 547.028 kb on + strand, within IAI47_02635at 547.028 kb on + strand, within IAI47_02635at 547.029 kb on - strand, within IAI47_02635at 547.029 kb on - strand, within IAI47_02635at 547.093 kb on + strand, within IAI47_02635at 547.094 kb on - strand, within IAI47_02635at 547.094 kb on - strand, within IAI47_02635at 547.094 kb on - strand, within IAI47_02635at 547.094 kb on - strand, within IAI47_02635at 547.166 kb on + strand, within IAI47_02635at 547.166 kb on + strand, within IAI47_02635at 547.166 kb on + strand, within IAI47_02635at 547.166 kb on + strand, within IAI47_02635at 547.166 kb on + strand, within IAI47_02635at 547.166 kb on + strand, within IAI47_02635at 547.167 kb on - strand, within IAI47_02635at 547.167 kb on - strand, within IAI47_02635at 547.167 kb on - strand, within IAI47_02635at 547.366 kb on + strand, within IAI47_02635at 547.366 kb on + strand, within IAI47_02635at 547.366 kb on + strand, within IAI47_02635at 547.367 kb on - strand, within IAI47_02635at 547.367 kb on - strand, within IAI47_02635at 547.367 kb on - strand, within IAI47_02635at 547.367 kb on - strand, within IAI47_02635at 547.537 kb on - strand, within IAI47_02635at 547.537 kb on - strand, within IAI47_02635at 547.632 kb on + strand, within IAI47_02635at 547.652 kb on + strand, within IAI47_02635at 547.652 kb on + strand, within IAI47_02635at 547.652 kb on + strand, within IAI47_02635at 547.652 kb on + strand, within IAI47_02635at 547.653 kb on - strand, within IAI47_02635at 547.653 kb on - strand, within IAI47_02635at 547.653 kb on - strand, within IAI47_02635at 547.653 kb on - strand, within IAI47_02635at 547.735 kb on + strand, within IAI47_02635at 547.736 kb on - strand, within IAI47_02635at 547.736 kb on - strand, within IAI47_02635at 547.736 kb on - strand, within IAI47_02635at 547.767 kb on - strand, within IAI47_02635at 547.812 kb on - strand, within IAI47_02635at 547.882 kb on + strandat 547.882 kb on + strandat 547.882 kb on + strandat 547.883 kb on - strandat 547.883 kb on - strandat 547.883 kb on - strandat 547.883 kb on - strandat 547.890 kb on + strandat 547.891 kb on - strandat 547.891 kb on - strandat 547.891 kb on - strandat 547.891 kb on - strandat 547.971 kb on - strandat 548.014 kb on + strand, within IAI47_02640at 548.033 kb on - strand, within IAI47_02640at 548.077 kb on + strand, within IAI47_02640at 548.078 kb on - strand, within IAI47_02640at 548.078 kb on - strand, within IAI47_02640at 548.080 kb on + strand, within IAI47_02640at 548.081 kb on - strand, within IAI47_02640at 548.081 kb on - strand, within IAI47_02640at 548.081 kb on - strand, within IAI47_02640at 548.081 kb on - strand, within IAI47_02640at 548.081 kb on - strand, within IAI47_02640at 548.081 kb on - strand, within IAI47_02640at 548.145 kb on + strand, within IAI47_02640at 548.145 kb on + strand, within IAI47_02640at 548.145 kb on + strand, within IAI47_02640at 548.145 kb on + strand, within IAI47_02640at 548.146 kb on - strand, within IAI47_02640at 548.146 kb on - strand, within IAI47_02640at 548.146 kb on - strand, within IAI47_02640at 548.156 kb on + strand, within IAI47_02640at 548.156 kb on + strand, within IAI47_02640at 548.156 kb on + strand, within IAI47_02640at 548.157 kb on - strand, within IAI47_02640at 548.157 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.160 kb on - strand, within IAI47_02640at 548.289 kb on + strandat 548.289 kb on + strandat 548.289 kb on + strandat 548.290 kb on - strandat 548.290 kb on - strandat 548.290 kb on - strandat 548.290 kb on - strandat 548.290 kb on - strandat 548.290 kb on - strandat 548.293 kb on + strandat 548.293 kb on + strandat 548.293 kb on + strandat 548.294 kb on - strandat 548.307 kb on - strandat 548.307 kb on - strandat 548.341 kb on + strandat 548.341 kb on + strandat 548.341 kb on + strandat 548.341 kb on + strandat 548.341 kb on + strandat 548.341 kb on + strandat 548.342 kb on - strandat 548.342 kb on - strandat 548.342 kb on - strandat 548.342 kb on - strandat 548.342 kb on - strandat 548.342 kb on - strandat 548.342 kb on - strandat 548.381 kb on + strandat 548.382 kb on - strandat 548.413 kb on + strandat 548.414 kb on - strandat 548.486 kb on - strandat 548.500 kb on + strandat 548.500 kb on + strandat 548.500 kb on + strandat 548.500 kb on + strandat 548.501 kb on - strandat 548.501 kb on - strandat 548.503 kb on + strandat 548.503 kb on + strandat 548.503 kb on + strandat 548.504 kb on - strandat 548.504 kb on - strandat 548.504 kb on - strandat 548.504 kb on - strandat 548.504 kb on - strandat 548.516 kb on - strandat 548.516 kb on - strandat 548.516 kb on - strandat 548.516 kb on - strandat 548.516 kb on - strandat 548.650 kb on + strand, within IAI47_02645at 548.650 kb on + strand, within IAI47_02645at 548.651 kb on - strand, within IAI47_02645at 548.651 kb on - strand, within IAI47_02645at 548.727 kb on - strand, within IAI47_02645at 548.833 kb on + strand, within IAI47_02645at 548.860 kb on + strand, within IAI47_02645at 548.861 kb on - strand, within IAI47_02645at 548.875 kb on + strand, within IAI47_02645at 548.875 kb on + strand, within IAI47_02645at 548.875 kb on + strand, within IAI47_02645at 548.875 kb on + strand, within IAI47_02645at 548.875 kb on + strand, within IAI47_02645at 548.876 kb on - strand, within IAI47_02645at 548.876 kb on - strand, within IAI47_02645at 548.876 kb on - strand, within IAI47_02645at 548.876 kb on - strand, within IAI47_02645at 548.876 kb on - strand, within IAI47_02645at 548.876 kb on - strand, within IAI47_02645at 548.918 kb on - strand, within IAI47_02645at 548.918 kb on - strand, within IAI47_02645at 548.918 kb on - strand, within IAI47_02645at 549.055 kb on + strand, within IAI47_02645at 549.055 kb on + strand, within IAI47_02645at 549.055 kb on + strand, within IAI47_02645at 549.056 kb on - strand, within IAI47_02645at 549.056 kb on - strand, within IAI47_02645at 549.196 kb on + strand, within IAI47_02645at 549.203 kb on - strand, within IAI47_02645at 549.228 kb on + strand, within IAI47_02645at 549.228 kb on + strand, within IAI47_02645at 549.228 kb on + strand, within IAI47_02645at 549.228 kb on + strand, within IAI47_02645at 549.228 kb on + strand, within IAI47_02645at 549.229 kb on - strand, within IAI47_02645at 549.229 kb on - strand, within IAI47_02645at 549.229 kb on - strand, within IAI47_02645at 549.285 kb on + strand, within IAI47_02645at 549.285 kb on + strand, within IAI47_02645at 549.286 kb on - strand, within IAI47_02645at 549.286 kb on - strand, within IAI47_02645

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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547,011 + IAI47_02635 0.39 -0.8
547,012 - IAI47_02635 0.39 +0.9
547,028 + IAI47_02635 0.40 -0.2
547,028 + IAI47_02635 0.40 +0.1
547,029 - IAI47_02635 0.40 -0.6
547,029 - IAI47_02635 0.40 +0.4
547,093 + IAI47_02635 0.44 +0.1
547,094 - IAI47_02635 0.44 -0.4
547,094 - IAI47_02635 0.44 +0.4
547,094 - IAI47_02635 0.44 +0.4
547,094 - IAI47_02635 0.44 +0.7
547,166 + IAI47_02635 0.48 -1.1
547,166 + IAI47_02635 0.48 +0.4
547,166 + IAI47_02635 0.48 +0.7
547,166 + IAI47_02635 0.48 +0.4
547,166 + IAI47_02635 0.48 -1.0
547,166 + IAI47_02635 0.48 +1.0
547,167 - IAI47_02635 0.48 +0.5
547,167 - IAI47_02635 0.48 -0.4
547,167 - IAI47_02635 0.48 +1.0
547,366 + IAI47_02635 0.61 +1.5
547,366 + IAI47_02635 0.61 -0.0
547,366 + IAI47_02635 0.61 +0.9
547,367 - IAI47_02635 0.61 +0.4
547,367 - IAI47_02635 0.61 +1.7
547,367 - IAI47_02635 0.61 -1.1
547,367 - IAI47_02635 0.61 -1.0
547,537 - IAI47_02635 0.71 +0.7
547,537 - IAI47_02635 0.71 -0.6
547,632 + IAI47_02635 0.77 -0.5
547,652 + IAI47_02635 0.78 +3.0
547,652 + IAI47_02635 0.78 +0.2
547,652 + IAI47_02635 0.78 +0.5
547,652 + IAI47_02635 0.78 -0.0
547,653 - IAI47_02635 0.78 -0.6
547,653 - IAI47_02635 0.78 -0.6
547,653 - IAI47_02635 0.78 -0.1
547,653 - IAI47_02635 0.78 -0.3
547,735 + IAI47_02635 0.83 +3.2
547,736 - IAI47_02635 0.83 +2.7
547,736 - IAI47_02635 0.83 -0.6
547,736 - IAI47_02635 0.83 +0.1
547,767 - IAI47_02635 0.85 -0.0
547,812 - IAI47_02635 0.88 -0.6
547,882 + -0.9
547,882 + -0.0
547,882 + +1.0
547,883 - -0.3
547,883 - +1.1
547,883 - -1.0
547,883 - +0.7
547,890 + +0.3
547,891 - +0.4
547,891 - +0.6
547,891 - +0.1
547,891 - -0.8
547,971 - +0.4
548,014 + IAI47_02640 0.10 +0.1
548,033 - IAI47_02640 0.16 +0.7
548,077 + IAI47_02640 0.30 +0.8
548,078 - IAI47_02640 0.30 -0.2
548,078 - IAI47_02640 0.30 +0.1
548,080 + IAI47_02640 0.31 +1.1
548,081 - IAI47_02640 0.31 +0.4
548,081 - IAI47_02640 0.31 -1.1
548,081 - IAI47_02640 0.31 -0.4
548,081 - IAI47_02640 0.31 +0.8
548,081 - IAI47_02640 0.31 +1.0
548,081 - IAI47_02640 0.31 +1.2
548,145 + IAI47_02640 0.50 -1.2
548,145 + IAI47_02640 0.50 -0.9
548,145 + IAI47_02640 0.50 -0.4
548,145 + IAI47_02640 0.50 -1.2
548,146 - IAI47_02640 0.51 -0.4
548,146 - IAI47_02640 0.51 -0.3
548,146 - IAI47_02640 0.51 -0.6
548,156 + IAI47_02640 0.54 +1.4
548,156 + IAI47_02640 0.54 +0.4
548,156 + IAI47_02640 0.54 +0.8
548,157 - IAI47_02640 0.54 +2.0
548,157 - IAI47_02640 0.54 +0.8
548,160 - IAI47_02640 0.55 +0.4
548,160 - IAI47_02640 0.55 -0.0
548,160 - IAI47_02640 0.55 -0.7
548,160 - IAI47_02640 0.55 -1.0
548,160 - IAI47_02640 0.55 +0.8
548,160 - IAI47_02640 0.55 +0.8
548,160 - IAI47_02640 0.55 +1.3
548,289 + +0.3
548,289 + +0.4
548,289 + +0.0
548,290 - +0.5
548,290 - +0.6
548,290 - +0.1
548,290 - +0.1
548,290 - +2.4
548,290 - +1.4
548,293 + +1.2
548,293 + +0.1
548,293 + +0.1
548,294 - -1.6
548,307 - -1.8
548,307 - +0.4
548,341 + +0.1
548,341 + +0.6
548,341 + +0.1
548,341 + +0.5
548,341 + -0.4
548,341 + +0.1
548,342 - -0.8
548,342 - +0.3
548,342 - +1.2
548,342 - +0.5
548,342 - +0.5
548,342 - -0.6
548,342 - -0.2
548,381 + -1.0
548,382 - -0.8
548,413 + -0.2
548,414 - -1.4
548,486 - -0.7
548,500 + -0.0
548,500 + +0.8
548,500 + +0.1
548,500 + -0.6
548,501 - +1.2
548,501 - -0.0
548,503 + +0.5
548,503 + -0.1
548,503 + +0.2
548,504 - -0.1
548,504 - +3.0
548,504 - -0.2
548,504 - +1.4
548,504 - +1.0
548,516 - +0.4
548,516 - -0.0
548,516 - +0.8
548,516 - -0.4
548,516 - +0.8
548,650 + IAI47_02645 0.15 -0.2
548,650 + IAI47_02645 0.15 -0.2
548,651 - IAI47_02645 0.15 -0.5
548,651 - IAI47_02645 0.15 +0.5
548,727 - IAI47_02645 0.19 +0.6
548,833 + IAI47_02645 0.24 -1.1
548,860 + IAI47_02645 0.26 +1.5
548,861 - IAI47_02645 0.26 -0.6
548,875 + IAI47_02645 0.27 -0.0
548,875 + IAI47_02645 0.27 +1.0
548,875 + IAI47_02645 0.27 -1.4
548,875 + IAI47_02645 0.27 +0.9
548,875 + IAI47_02645 0.27 -0.0
548,876 - IAI47_02645 0.27 +1.1
548,876 - IAI47_02645 0.27 +0.6
548,876 - IAI47_02645 0.27 -0.5
548,876 - IAI47_02645 0.27 +0.4
548,876 - IAI47_02645 0.27 -0.7
548,876 - IAI47_02645 0.27 +0.4
548,918 - IAI47_02645 0.29 +0.2
548,918 - IAI47_02645 0.29 -0.4
548,918 - IAI47_02645 0.29 +1.4
549,055 + IAI47_02645 0.36 +2.0
549,055 + IAI47_02645 0.36 +0.1
549,055 + IAI47_02645 0.36 -0.8
549,056 - IAI47_02645 0.36 -0.3
549,056 - IAI47_02645 0.36 -1.2
549,196 + IAI47_02645 0.43 -0.5
549,203 - IAI47_02645 0.43 +0.4
549,228 + IAI47_02645 0.45 +0.4
549,228 + IAI47_02645 0.45 +0.4
549,228 + IAI47_02645 0.45 -0.4
549,228 + IAI47_02645 0.45 +0.2
549,228 + IAI47_02645 0.45 +0.4
549,229 - IAI47_02645 0.45 +0.2
549,229 - IAI47_02645 0.45 +0.4
549,229 - IAI47_02645 0.45 +0.6
549,285 + IAI47_02645 0.48 +1.1
549,285 + IAI47_02645 0.48 -0.3
549,286 - IAI47_02645 0.48 +0.6
549,286 - IAI47_02645 0.48 +0.2

Or see this region's nucleotide sequence