Experiment: Ying_Nucleobase14 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01835 and IAI47_01840 are separated by 49 nucleotides IAI47_01840 and IAI47_01845 are separated by 13 nucleotides IAI47_01845 and IAI47_01850 are separated by 54 nucleotides
IAI47_01835: IAI47_01835 - Hsp33 family molecular chaperone HslO, at 403,103 to 403,969
_01835
IAI47_01840: IAI47_01840 - ribosome-associated heat shock protein Hsp15, at 404,019 to 404,420
_01840
IAI47_01845: IAI47_01845 - GMP/IMP nucleotidase, at 404,434 to 405,081
_01845
IAI47_01850: IAI47_01850 - intracellular growth attenuator family protein, at 405,136 to 407,271
_01850
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 403.505 kb on - strand, within IAI47_01835 at 403.542 kb on + strand, within IAI47_01835 at 403.542 kb on + strand, within IAI47_01835 at 403.542 kb on + strand, within IAI47_01835 at 403.543 kb on - strand, within IAI47_01835 at 403.543 kb on - strand, within IAI47_01835 at 403.621 kb on + strand, within IAI47_01835 at 403.628 kb on + strand, within IAI47_01835 at 403.629 kb on - strand, within IAI47_01835 at 403.635 kb on + strand, within IAI47_01835 at 403.635 kb on + strand, within IAI47_01835 at 403.636 kb on - strand, within IAI47_01835 at 403.691 kb on - strand, within IAI47_01835 at 403.698 kb on - strand, within IAI47_01835 at 403.770 kb on - strand, within IAI47_01835 at 403.941 kb on + strand at 403.941 kb on + strand at 403.942 kb on - strand at 403.942 kb on - strand at 403.942 kb on - strand at 403.969 kb on + strand at 403.970 kb on - strand at 403.970 kb on - strand at 404.034 kb on + strand at 404.039 kb on + strand at 404.039 kb on + strand at 404.040 kb on - strand at 404.096 kb on + strand, within IAI47_01840 at 404.096 kb on + strand, within IAI47_01840 at 404.096 kb on + strand, within IAI47_01840 at 404.096 kb on + strand, within IAI47_01840 at 404.096 kb on + strand, within IAI47_01840 at 404.097 kb on - strand, within IAI47_01840 at 404.147 kb on + strand, within IAI47_01840 at 404.167 kb on + strand, within IAI47_01840 at 404.167 kb on + strand, within IAI47_01840 at 404.308 kb on + strand, within IAI47_01840 at 404.308 kb on + strand, within IAI47_01840 at 404.308 kb on + strand, within IAI47_01840 at 404.309 kb on - strand, within IAI47_01840 at 404.309 kb on - strand, within IAI47_01840 at 404.309 kb on - strand, within IAI47_01840 at 404.359 kb on + strand, within IAI47_01840 at 404.359 kb on + strand, within IAI47_01840 at 404.360 kb on - strand, within IAI47_01840 at 404.360 kb on - strand, within IAI47_01840 at 404.450 kb on + strand at 404.518 kb on + strand, within IAI47_01845 at 404.519 kb on - strand, within IAI47_01845 at 404.519 kb on - strand, within IAI47_01845 at 404.519 kb on - strand, within IAI47_01845 at 404.519 kb on - strand, within IAI47_01845 at 404.539 kb on + strand, within IAI47_01845 at 404.539 kb on + strand, within IAI47_01845 at 404.578 kb on - strand, within IAI47_01845 at 404.617 kb on + strand, within IAI47_01845 at 404.617 kb on + strand, within IAI47_01845 at 404.618 kb on - strand, within IAI47_01845 at 404.629 kb on + strand, within IAI47_01845 at 404.630 kb on - strand, within IAI47_01845 at 404.630 kb on - strand, within IAI47_01845 at 404.661 kb on + strand, within IAI47_01845 at 404.661 kb on + strand, within IAI47_01845 at 404.662 kb on - strand, within IAI47_01845 at 404.674 kb on + strand, within IAI47_01845 at 404.674 kb on + strand, within IAI47_01845 at 404.677 kb on + strand, within IAI47_01845 at 404.678 kb on - strand, within IAI47_01845 at 404.678 kb on - strand, within IAI47_01845 at 404.678 kb on - strand, within IAI47_01845 at 404.695 kb on + strand, within IAI47_01845 at 404.696 kb on - strand, within IAI47_01845 at 404.729 kb on + strand, within IAI47_01845 at 404.729 kb on + strand, within IAI47_01845 at 404.729 kb on + strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.730 kb on - strand, within IAI47_01845 at 404.799 kb on + strand, within IAI47_01845 at 404.800 kb on - strand, within IAI47_01845 at 404.800 kb on - strand, within IAI47_01845 at 404.818 kb on + strand, within IAI47_01845 at 404.818 kb on + strand, within IAI47_01845 at 404.819 kb on - strand, within IAI47_01845 at 404.819 kb on - strand, within IAI47_01845 at 404.819 kb on - strand, within IAI47_01845 at 404.819 kb on - strand, within IAI47_01845 at 404.850 kb on + strand, within IAI47_01845 at 404.876 kb on + strand, within IAI47_01845 at 404.888 kb on + strand, within IAI47_01845 at 404.888 kb on + strand, within IAI47_01845 at 404.889 kb on - strand, within IAI47_01845 at 404.889 kb on - strand, within IAI47_01845 at 404.889 kb on - strand, within IAI47_01845 at 404.896 kb on + strand, within IAI47_01845 at 404.896 kb on + strand, within IAI47_01845 at 404.897 kb on - strand, within IAI47_01845 at 404.897 kb on - strand, within IAI47_01845 at 404.902 kb on - strand, within IAI47_01845 at 404.902 kb on - strand, within IAI47_01845 at 404.918 kb on + strand, within IAI47_01845 at 405.057 kb on + strand at 405.058 kb on - strand at 405.058 kb on - strand at 405.118 kb on - strand at 405.142 kb on + strand at 405.143 kb on - strand at 405.143 kb on - strand at 405.174 kb on + strand at 405.174 kb on + strand at 405.174 kb on + strand at 405.175 kb on - strand at 405.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3 remove 403,505 - IAI47_01835 0.46 -0.2 403,542 + IAI47_01835 0.51 -0.8 403,542 + IAI47_01835 0.51 +0.1 403,542 + IAI47_01835 0.51 +0.4 403,543 - IAI47_01835 0.51 -1.8 403,543 - IAI47_01835 0.51 +0.4 403,621 + IAI47_01835 0.60 +0.4 403,628 + IAI47_01835 0.61 -0.8 403,629 - IAI47_01835 0.61 -0.4 403,635 + IAI47_01835 0.61 -0.6 403,635 + IAI47_01835 0.61 -0.4 403,636 - IAI47_01835 0.61 -1.1 403,691 - IAI47_01835 0.68 -0.0 403,698 - IAI47_01835 0.69 +0.4 403,770 - IAI47_01835 0.77 +0.4 403,941 + -1.6 403,941 + -1.6 403,942 - +1.4 403,942 - -2.4 403,942 - -1.2 403,969 + +2.4 403,970 - +0.4 403,970 - +0.7 404,034 + -0.3 404,039 + +0.4 404,039 + -1.4 404,040 - +1.0 404,096 + IAI47_01840 0.19 -0.0 404,096 + IAI47_01840 0.19 -0.0 404,096 + IAI47_01840 0.19 -0.7 404,096 + IAI47_01840 0.19 -0.6 404,096 + IAI47_01840 0.19 -0.0 404,097 - IAI47_01840 0.19 -0.1 404,147 + IAI47_01840 0.32 -0.2 404,167 + IAI47_01840 0.37 -1.4 404,167 + IAI47_01840 0.37 -0.3 404,308 + IAI47_01840 0.72 -2.6 404,308 + IAI47_01840 0.72 -0.9 404,308 + IAI47_01840 0.72 +0.6 404,309 - IAI47_01840 0.72 +1.3 404,309 - IAI47_01840 0.72 +0.1 404,309 - IAI47_01840 0.72 +0.1 404,359 + IAI47_01840 0.85 -0.9 404,359 + IAI47_01840 0.85 -0.0 404,360 - IAI47_01840 0.85 +0.0 404,360 - IAI47_01840 0.85 -0.3 404,450 + +0.0 404,518 + IAI47_01845 0.13 -1.4 404,519 - IAI47_01845 0.13 -0.5 404,519 - IAI47_01845 0.13 -0.3 404,519 - IAI47_01845 0.13 -0.4 404,519 - IAI47_01845 0.13 -0.2 404,539 + IAI47_01845 0.16 +1.2 404,539 + IAI47_01845 0.16 -0.2 404,578 - IAI47_01845 0.22 +0.2 404,617 + IAI47_01845 0.28 -1.6 404,617 + IAI47_01845 0.28 +0.6 404,618 - IAI47_01845 0.28 -0.6 404,629 + IAI47_01845 0.30 -0.2 404,630 - IAI47_01845 0.30 +1.4 404,630 - IAI47_01845 0.30 +1.4 404,661 + IAI47_01845 0.35 -0.2 404,661 + IAI47_01845 0.35 +0.0 404,662 - IAI47_01845 0.35 +0.4 404,674 + IAI47_01845 0.37 +0.1 404,674 + IAI47_01845 0.37 +0.4 404,677 + IAI47_01845 0.38 -1.6 404,678 - IAI47_01845 0.38 +1.4 404,678 - IAI47_01845 0.38 +1.0 404,678 - IAI47_01845 0.38 -0.1 404,695 + IAI47_01845 0.40 +0.1 404,696 - IAI47_01845 0.40 +0.6 404,729 + IAI47_01845 0.46 +1.6 404,729 + IAI47_01845 0.46 -0.5 404,729 + IAI47_01845 0.46 -0.3 404,730 - IAI47_01845 0.46 +1.2 404,730 - IAI47_01845 0.46 -2.1 404,730 - IAI47_01845 0.46 +0.9 404,730 - IAI47_01845 0.46 -0.6 404,730 - IAI47_01845 0.46 -1.2 404,730 - IAI47_01845 0.46 -0.6 404,730 - IAI47_01845 0.46 -0.6 404,799 + IAI47_01845 0.56 +0.4 404,800 - IAI47_01845 0.56 -0.3 404,800 - IAI47_01845 0.56 +0.1 404,818 + IAI47_01845 0.59 +0.8 404,818 + IAI47_01845 0.59 -1.2 404,819 - IAI47_01845 0.59 +0.1 404,819 - IAI47_01845 0.59 +0.4 404,819 - IAI47_01845 0.59 +1.0 404,819 - IAI47_01845 0.59 +1.2 404,850 + IAI47_01845 0.64 +0.1 404,876 + IAI47_01845 0.68 -0.1 404,888 + IAI47_01845 0.70 -0.6 404,888 + IAI47_01845 0.70 +0.4 404,889 - IAI47_01845 0.70 -2.3 404,889 - IAI47_01845 0.70 +0.4 404,889 - IAI47_01845 0.70 -0.6 404,896 + IAI47_01845 0.71 -0.0 404,896 + IAI47_01845 0.71 +0.7 404,897 - IAI47_01845 0.71 +0.4 404,897 - IAI47_01845 0.71 +0.9 404,902 - IAI47_01845 0.72 -0.3 404,902 - IAI47_01845 0.72 -0.0 404,918 + IAI47_01845 0.75 +0.6 405,057 + +3.0 405,058 - +0.8 405,058 - -0.6 405,118 - +1.4 405,142 + +0.4 405,143 - +1.0 405,143 - -0.6 405,174 + +0.6 405,174 + -0.5 405,174 + +1.7 405,175 - +0.8 405,175 - -0.3
Or see this region's nucleotide sequence