Strain Fitness in Pantoea sp. MT58 around IAI47_00865

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00860 and IAI47_00865 are separated by 164 nucleotidesIAI47_00865 and IAI47_00870 are separated by 225 nucleotidesIAI47_00870 and IAI47_00875 are separated by 80 nucleotides IAI47_00860: IAI47_00860 - DNA-binding transcriptional regulator CytR, at 180,325 to 181,362 _00860 IAI47_00865: IAI47_00865 - primosomal protein N', at 181,527 to 183,722 _00865 IAI47_00870: IAI47_00870 - 50S ribosomal protein L31, at 183,948 to 184,163 _00870 IAI47_00875: IAI47_00875 - met regulon transcriptional regulator MetJ, at 184,244 to 184,561 _00875 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 180.597 kb on + strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.755 kb on - strand, within IAI47_00860at 180.796 kb on - strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.818 kb on - strand, within IAI47_00860at 180.818 kb on - strand, within IAI47_00860at 181.014 kb on + strand, within IAI47_00860at 181.014 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.117 kb on - strand, within IAI47_00860at 181.158 kb on + strand, within IAI47_00860at 181.159 kb on - strand, within IAI47_00860at 181.170 kb on + strand, within IAI47_00860at 181.170 kb on + strand, within IAI47_00860at 181.205 kb on + strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.286 kb on - strandat 181.382 kb on - strandat 181.382 kb on - strandat 181.438 kb on - strandat 181.459 kb on + strandat 181.459 kb on + strandat 181.459 kb on + strandat 181.463 kb on + strandat 181.464 kb on - strandat 181.486 kb on + strandat 181.486 kb on + strandat 181.487 kb on - strandat 181.487 kb on - strandat 183.715 kb on - strandat 183.723 kb on - strandat 183.723 kb on - strandat 183.723 kb on - strandat 183.723 kb on - strandat 183.723 kb on - strandat 183.757 kb on + strandat 183.757 kb on + strandat 183.757 kb on + strandat 183.757 kb on + strandat 183.757 kb on + strandat 183.757 kb on + strandat 183.758 kb on - strandat 183.758 kb on - strandat 183.758 kb on - strandat 183.758 kb on - strandat 183.762 kb on + strandat 183.762 kb on + strandat 183.762 kb on + strandat 183.762 kb on + strandat 183.762 kb on + strandat 183.763 kb on - strandat 183.763 kb on - strandat 183.763 kb on - strandat 183.763 kb on - strandat 183.786 kb on - strandat 183.862 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.869 kb on + strandat 183.871 kb on + strandat 183.871 kb on + strandat 183.871 kb on + strandat 184.127 kb on + strand, within IAI47_00870at 184.128 kb on - strand, within IAI47_00870at 184.161 kb on + strandat 184.161 kb on + strandat 184.167 kb on + strandat 184.167 kb on + strandat 184.167 kb on + strandat 184.167 kb on + strandat 184.168 kb on - strandat 184.168 kb on - strandat 184.269 kb on - strandat 184.276 kb on + strand, within IAI47_00875at 184.328 kb on - strand, within IAI47_00875at 184.478 kb on - strand, within IAI47_00875at 184.478 kb on - strand, within IAI47_00875at 184.538 kb on - strandat 184.539 kb on + strandat 184.540 kb on - strandat 184.567 kb on - strandat 184.571 kb on + strandat 184.571 kb on + strandat 184.575 kb on + strandat 184.575 kb on + strandat 184.586 kb on - strandat 184.586 kb on - strandat 184.608 kb on + strandat 184.609 kb on - strandat 184.609 kb on - strandat 184.640 kb on - strandat 184.640 kb on - strandat 184.703 kb on - strandat 184.703 kb on - strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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180,597 + IAI47_00860 0.26 +3.5
180,597 + IAI47_00860 0.26 +2.4
180,597 + IAI47_00860 0.26 +1.9
180,598 - IAI47_00860 0.26 +3.0
180,598 - IAI47_00860 0.26 +2.7
180,598 - IAI47_00860 0.26 +2.9
180,598 - IAI47_00860 0.26 +2.9
180,600 + IAI47_00860 0.26 +2.2
180,600 + IAI47_00860 0.26 +3.0
180,600 + IAI47_00860 0.26 +2.7
180,600 + IAI47_00860 0.26 +3.2
180,600 + IAI47_00860 0.26 +3.6
180,601 - IAI47_00860 0.27 +4.2
180,601 - IAI47_00860 0.27 +3.7
180,601 - IAI47_00860 0.27 +3.0
180,699 + IAI47_00860 0.36 +2.4
180,699 + IAI47_00860 0.36 +2.8
180,699 + IAI47_00860 0.36 +1.9
180,699 + IAI47_00860 0.36 +1.8
180,699 + IAI47_00860 0.36 +2.4
180,699 + IAI47_00860 0.36 +3.1
180,699 + IAI47_00860 0.36 +4.8
180,700 - IAI47_00860 0.36 +3.3
180,700 - IAI47_00860 0.36 +2.5
180,700 - IAI47_00860 0.36 +2.2
180,700 - IAI47_00860 0.36 +3.5
180,700 - IAI47_00860 0.36 +2.4
180,700 - IAI47_00860 0.36 +2.6
180,701 + IAI47_00860 0.36 +3.6
180,701 + IAI47_00860 0.36 +2.7
180,701 + IAI47_00860 0.36 +2.9
180,701 + IAI47_00860 0.36 +2.4
180,701 + IAI47_00860 0.36 +5.5
180,701 + IAI47_00860 0.36 +3.6
180,701 + IAI47_00860 0.36 +2.5
180,701 + IAI47_00860 0.36 +2.3
180,701 + IAI47_00860 0.36 +2.7
180,701 + IAI47_00860 0.36 +2.4
180,701 + IAI47_00860 0.36 +3.1
180,701 + IAI47_00860 0.36 +1.3
180,701 + IAI47_00860 0.36 +2.7
180,701 + IAI47_00860 0.36 +3.8
180,701 + IAI47_00860 0.36 +2.8
180,701 + IAI47_00860 0.36 +3.3
180,701 + IAI47_00860 0.36 +2.6
180,701 + IAI47_00860 0.36 +1.8
180,702 - IAI47_00860 0.36 +2.3
180,702 - IAI47_00860 0.36 +3.3
180,702 - IAI47_00860 0.36 +2.7
180,702 - IAI47_00860 0.36 +3.0
180,702 - IAI47_00860 0.36 +2.1
180,702 - IAI47_00860 0.36 +2.8
180,702 - IAI47_00860 0.36 +3.0
180,702 - IAI47_00860 0.36 +2.7
180,702 - IAI47_00860 0.36 +3.3
180,702 - IAI47_00860 0.36 +2.5
180,702 - IAI47_00860 0.36 +4.3
180,702 - IAI47_00860 0.36 +2.2
180,702 - IAI47_00860 0.36 +1.7
180,702 - IAI47_00860 0.36 +2.2
180,702 - IAI47_00860 0.36 +2.4
180,702 - IAI47_00860 0.36 +3.6
180,702 - IAI47_00860 0.36 +2.5
180,702 - IAI47_00860 0.36 +4.0
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +3.2
180,702 - IAI47_00860 0.36 +2.4
180,702 - IAI47_00860 0.36 +2.7
180,702 - IAI47_00860 0.36 +2.0
180,702 - IAI47_00860 0.36 +1.9
180,746 + IAI47_00860 0.41 +1.9
180,746 + IAI47_00860 0.41 +3.2
180,746 + IAI47_00860 0.41 +3.1
180,746 + IAI47_00860 0.41 +0.8
180,746 + IAI47_00860 0.41 +3.2
180,746 + IAI47_00860 0.41 +2.8
180,747 - IAI47_00860 0.41 +3.9
180,747 - IAI47_00860 0.41 +2.7
180,747 - IAI47_00860 0.41 +2.6
180,747 - IAI47_00860 0.41 +4.3
180,747 - IAI47_00860 0.41 +2.0
180,747 - IAI47_00860 0.41 +4.1
180,747 - IAI47_00860 0.41 +1.3
180,747 - IAI47_00860 0.41 +3.3
180,755 - IAI47_00860 0.41 +2.5
180,796 - IAI47_00860 0.45 +3.3
180,810 + IAI47_00860 0.47 +1.7
180,810 + IAI47_00860 0.47 +3.5
180,810 + IAI47_00860 0.47 +1.4
180,811 - IAI47_00860 0.47 +2.7
180,811 - IAI47_00860 0.47 +3.1
180,811 - IAI47_00860 0.47 +3.7
180,811 - IAI47_00860 0.47 +2.5
180,811 - IAI47_00860 0.47 +3.6
180,818 - IAI47_00860 0.47 +2.6
180,818 - IAI47_00860 0.47 +3.4
181,014 + IAI47_00860 0.66 +2.2
181,014 + IAI47_00860 0.66 +3.0
181,070 + IAI47_00860 0.72 +3.2
181,070 + IAI47_00860 0.72 +2.6
181,070 + IAI47_00860 0.72 +1.8
181,070 + IAI47_00860 0.72 +2.4
181,070 + IAI47_00860 0.72 +2.1
181,070 + IAI47_00860 0.72 +3.3
181,071 - IAI47_00860 0.72 +1.2
181,071 - IAI47_00860 0.72 +3.1
181,071 - IAI47_00860 0.72 +3.7
181,117 - IAI47_00860 0.76 +4.3
181,158 + IAI47_00860 0.80 +2.2
181,159 - IAI47_00860 0.80 +2.4
181,170 + IAI47_00860 0.81 +2.2
181,170 + IAI47_00860 0.81 +3.0
181,205 + IAI47_00860 0.85 +2.9
181,237 - IAI47_00860 0.88 +2.8
181,237 - IAI47_00860 0.88 +2.6
181,237 - IAI47_00860 0.88 +3.0
181,286 - +3.3
181,382 - -1.3
181,382 - -0.9
181,438 - -0.6
181,459 + +1.6
181,459 + +2.6
181,459 + +1.6
181,463 + +1.4
181,464 - -1.0
181,486 + +1.4
181,486 + +4.2
181,487 - -1.3
181,487 - -1.2
183,715 - -0.8
183,723 - -0.3
183,723 - +0.1
183,723 - -0.8
183,723 - -1.2
183,723 - -0.3
183,757 + +2.7
183,757 + -0.4
183,757 + +2.0
183,757 + -0.5
183,757 + -0.6
183,757 + +1.0
183,758 - -0.3
183,758 - -0.3
183,758 - +1.4
183,758 - +1.7
183,762 + -0.0
183,762 + +2.0
183,762 + +0.7
183,762 + +0.2
183,762 + -0.6
183,763 - +1.1
183,763 - -1.8
183,763 - +0.2
183,763 - +1.9
183,786 - -0.3
183,862 + -1.2
183,869 + +1.0
183,869 + -0.6
183,869 + +0.4
183,869 + -1.0
183,869 + -1.9
183,869 + +1.0
183,869 + +2.0
183,869 + +0.8
183,869 + -0.8
183,869 + -0.1
183,869 + -1.1
183,869 + -0.6
183,869 + +0.0
183,869 + -2.6
183,869 + +0.6
183,869 + -0.9
183,869 + +0.1
183,871 + -1.9
183,871 + +1.4
183,871 + -0.2
184,127 + IAI47_00870 0.83 +0.7
184,128 - IAI47_00870 0.83 +2.0
184,161 + +2.7
184,161 + +1.2
184,167 + +0.7
184,167 + -0.6
184,167 + -0.0
184,167 + -1.2
184,168 - +0.6
184,168 - +0.8
184,269 - +1.4
184,276 + IAI47_00875 0.10 -0.6
184,328 - IAI47_00875 0.26 -0.6
184,478 - IAI47_00875 0.74 -0.6
184,478 - IAI47_00875 0.74 -1.6
184,538 - -1.2
184,539 + -1.9
184,540 - -1.6
184,567 - +0.4
184,571 + +0.4
184,571 + -0.6
184,575 + -3.3
184,575 + -1.8
184,586 - +1.2
184,586 - +0.0
184,608 + -0.6
184,609 - +0.0
184,609 - +1.0
184,640 - +0.7
184,640 - -1.9
184,703 - -0.6
184,703 - -0.3
184,715 + -0.2
184,715 + +0.4
184,715 + -1.6

Or see this region's nucleotide sequence