Strain Fitness in Pantoea sp. MT58 around IAI47_20415

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20410 and IAI47_20415 overlap by 4 nucleotidesIAI47_20415 and IAI47_20420 overlap by 7 nucleotides IAI47_20410: IAI47_20410 - two-component system sensor histidine kinase DcuS, at 322,172 to 323,806 _20410 IAI47_20415: IAI47_20415 - two-component system response regulator DcuR, at 323,803 to 324,522 _20415 IAI47_20420: IAI47_20420 - FAD:protein FMN transferase, at 324,516 to 325,478 _20420 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 322.867 kb on + strand, within IAI47_20410at 322.867 kb on + strand, within IAI47_20410at 322.867 kb on + strand, within IAI47_20410at 322.868 kb on - strand, within IAI47_20410at 322.888 kb on - strand, within IAI47_20410at 322.888 kb on - strand, within IAI47_20410at 322.938 kb on + strand, within IAI47_20410at 322.938 kb on + strand, within IAI47_20410at 322.939 kb on - strand, within IAI47_20410at 322.939 kb on - strand, within IAI47_20410at 323.032 kb on + strand, within IAI47_20410at 323.032 kb on + strand, within IAI47_20410at 323.032 kb on + strand, within IAI47_20410at 323.033 kb on - strand, within IAI47_20410at 323.033 kb on - strand, within IAI47_20410at 323.043 kb on - strand, within IAI47_20410at 323.115 kb on + strand, within IAI47_20410at 323.115 kb on + strand, within IAI47_20410at 323.116 kb on - strand, within IAI47_20410at 323.116 kb on - strand, within IAI47_20410at 323.116 kb on - strand, within IAI47_20410at 323.131 kb on + strand, within IAI47_20410at 323.131 kb on + strand, within IAI47_20410at 323.132 kb on - strand, within IAI47_20410at 323.132 kb on - strand, within IAI47_20410at 323.187 kb on + strand, within IAI47_20410at 323.187 kb on + strand, within IAI47_20410at 323.187 kb on + strand, within IAI47_20410at 323.188 kb on - strand, within IAI47_20410at 323.192 kb on + strand, within IAI47_20410at 323.192 kb on + strand, within IAI47_20410at 323.193 kb on - strand, within IAI47_20410at 323.193 kb on - strand, within IAI47_20410at 323.193 kb on - strand, within IAI47_20410at 323.205 kb on + strand, within IAI47_20410at 323.205 kb on + strand, within IAI47_20410at 323.205 kb on + strand, within IAI47_20410at 323.205 kb on + strand, within IAI47_20410at 323.205 kb on + strand, within IAI47_20410at 323.206 kb on - strand, within IAI47_20410at 323.206 kb on - strand, within IAI47_20410at 323.206 kb on - strand, within IAI47_20410at 323.291 kb on + strand, within IAI47_20410at 323.291 kb on + strand, within IAI47_20410at 323.291 kb on + strand, within IAI47_20410at 323.292 kb on - strand, within IAI47_20410at 323.292 kb on - strand, within IAI47_20410at 323.292 kb on - strand, within IAI47_20410at 323.292 kb on - strand, within IAI47_20410at 323.315 kb on + strand, within IAI47_20410at 323.315 kb on + strand, within IAI47_20410at 323.383 kb on + strand, within IAI47_20410at 323.422 kb on + strand, within IAI47_20410at 323.423 kb on - strand, within IAI47_20410at 323.482 kb on + strand, within IAI47_20410at 323.500 kb on - strand, within IAI47_20410at 323.564 kb on + strand, within IAI47_20410at 323.564 kb on + strand, within IAI47_20410at 323.564 kb on + strand, within IAI47_20410at 323.751 kb on + strandat 323.752 kb on - strandat 323.752 kb on - strandat 323.752 kb on - strandat 323.752 kb on - strandat 323.752 kb on - strandat 323.755 kb on + strandat 323.816 kb on + strandat 323.816 kb on + strandat 323.816 kb on + strandat 323.816 kb on + strandat 323.817 kb on - strandat 323.860 kb on + strandat 323.860 kb on + strandat 323.860 kb on + strandat 323.861 kb on - strandat 323.862 kb on + strandat 323.909 kb on + strand, within IAI47_20415at 323.957 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.974 kb on + strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.975 kb on - strand, within IAI47_20415at 323.976 kb on + strand, within IAI47_20415at 323.976 kb on + strand, within IAI47_20415at 323.976 kb on + strand, within IAI47_20415at 323.976 kb on + strand, within IAI47_20415at 323.977 kb on - strand, within IAI47_20415at 323.977 kb on - strand, within IAI47_20415at 323.977 kb on - strand, within IAI47_20415at 323.977 kb on - strand, within IAI47_20415at 323.977 kb on - strand, within IAI47_20415at 324.045 kb on + strand, within IAI47_20415at 324.046 kb on - strand, within IAI47_20415at 324.046 kb on - strand, within IAI47_20415at 324.094 kb on + strand, within IAI47_20415at 324.095 kb on - strand, within IAI47_20415at 324.095 kb on - strand, within IAI47_20415at 324.095 kb on - strand, within IAI47_20415at 324.095 kb on - strand, within IAI47_20415at 324.095 kb on - strand, within IAI47_20415at 324.101 kb on + strand, within IAI47_20415at 324.102 kb on - strand, within IAI47_20415at 324.109 kb on + strand, within IAI47_20415at 324.109 kb on + strand, within IAI47_20415at 324.109 kb on + strand, within IAI47_20415at 324.110 kb on - strand, within IAI47_20415at 324.110 kb on - strand, within IAI47_20415at 324.186 kb on + strand, within IAI47_20415at 324.199 kb on + strand, within IAI47_20415at 324.199 kb on + strand, within IAI47_20415at 324.200 kb on - strand, within IAI47_20415at 324.200 kb on - strand, within IAI47_20415at 324.369 kb on + strand, within IAI47_20415at 324.370 kb on - strand, within IAI47_20415at 324.370 kb on - strand, within IAI47_20415at 324.370 kb on - strand, within IAI47_20415at 324.418 kb on - strand, within IAI47_20415at 324.421 kb on - strand, within IAI47_20415at 324.436 kb on - strand, within IAI47_20415at 324.436 kb on - strand, within IAI47_20415at 324.442 kb on + strand, within IAI47_20415at 324.442 kb on + strand, within IAI47_20415at 324.442 kb on + strand, within IAI47_20415at 324.442 kb on + strand, within IAI47_20415at 324.443 kb on - strand, within IAI47_20415at 324.443 kb on - strand, within IAI47_20415at 324.467 kb on - strandat 324.490 kb on + strandat 324.500 kb on + strandat 324.501 kb on - strandat 324.511 kb on + strandat 324.511 kb on + strandat 324.511 kb on + strandat 324.511 kb on + strandat 324.512 kb on - strandat 324.512 kb on - strandat 324.546 kb on + strandat 324.626 kb on + strand, within IAI47_20420at 324.626 kb on + strand, within IAI47_20420at 324.627 kb on - strand, within IAI47_20420at 324.660 kb on + strand, within IAI47_20420at 324.660 kb on + strand, within IAI47_20420at 324.660 kb on + strand, within IAI47_20420at 324.661 kb on - strand, within IAI47_20420at 324.661 kb on - strand, within IAI47_20420at 324.661 kb on - strand, within IAI47_20420at 324.667 kb on + strand, within IAI47_20420at 324.667 kb on + strand, within IAI47_20420at 324.667 kb on + strand, within IAI47_20420at 324.668 kb on - strand, within IAI47_20420at 324.682 kb on + strand, within IAI47_20420at 324.682 kb on + strand, within IAI47_20420at 324.682 kb on + strand, within IAI47_20420at 324.682 kb on + strand, within IAI47_20420at 324.683 kb on - strand, within IAI47_20420at 324.683 kb on - strand, within IAI47_20420at 324.683 kb on - strand, within IAI47_20420at 324.683 kb on - strand, within IAI47_20420at 324.811 kb on + strand, within IAI47_20420at 324.811 kb on + strand, within IAI47_20420at 324.811 kb on + strand, within IAI47_20420at 324.812 kb on - strand, within IAI47_20420at 324.956 kb on + strand, within IAI47_20420at 324.957 kb on - strand, within IAI47_20420at 324.972 kb on - strand, within IAI47_20420at 324.972 kb on - strand, within IAI47_20420at 324.999 kb on + strand, within IAI47_20420at 324.999 kb on + strand, within IAI47_20420at 325.000 kb on - strand, within IAI47_20420at 325.000 kb on - strand, within IAI47_20420at 325.000 kb on - strand, within IAI47_20420at 325.002 kb on + strand, within IAI47_20420at 325.002 kb on + strand, within IAI47_20420at 325.002 kb on + strand, within IAI47_20420at 325.002 kb on + strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.003 kb on - strand, within IAI47_20420at 325.013 kb on + strand, within IAI47_20420at 325.013 kb on + strand, within IAI47_20420at 325.014 kb on - strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.015 kb on + strand, within IAI47_20420at 325.016 kb on - strand, within IAI47_20420at 325.208 kb on + strand, within IAI47_20420at 325.209 kb on - strand, within IAI47_20420at 325.308 kb on - strand, within IAI47_20420at 325.438 kb on - strandat 325.450 kb on + strandat 325.450 kb on + strandat 325.450 kb on + strandat 325.450 kb on + strandat 325.450 kb on + strandat 325.451 kb on - strandat 325.451 kb on - strandat 325.451 kb on - strandat 325.456 kb on + strandat 325.456 kb on + strandat 325.456 kb on + strandat 325.456 kb on + strandat 325.457 kb on - strandat 325.457 kb on - strandat 325.457 kb on - strandat 325.457 kb on - strandat 325.457 kb on - strandat 325.457 kb on - strandat 325.457 kb on - strandat 325.473 kb on + strandat 325.473 kb on + strandat 325.473 kb on + strandat 325.474 kb on - strandat 325.474 kb on - strandat 325.474 kb on - strandat 325.478 kb on + strandat 325.479 kb on - strandat 325.479 kb on - strandat 325.479 kb on - strandat 325.497 kb on + strandat 325.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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322,867 + IAI47_20410 0.43 -0.2
322,867 + IAI47_20410 0.43 -1.5
322,867 + IAI47_20410 0.43 +0.7
322,868 - IAI47_20410 0.43 +0.1
322,888 - IAI47_20410 0.44 -2.7
322,888 - IAI47_20410 0.44 -2.7
322,938 + IAI47_20410 0.47 +0.1
322,938 + IAI47_20410 0.47 +1.9
322,939 - IAI47_20410 0.47 -1.5
322,939 - IAI47_20410 0.47 -2.7
323,032 + IAI47_20410 0.53 -0.1
323,032 + IAI47_20410 0.53 +1.4
323,032 + IAI47_20410 0.53 +1.7
323,033 - IAI47_20410 0.53 +0.1
323,033 - IAI47_20410 0.53 -0.9
323,043 - IAI47_20410 0.53 +0.1
323,115 + IAI47_20410 0.58 +0.0
323,115 + IAI47_20410 0.58 +0.5
323,116 - IAI47_20410 0.58 -1.5
323,116 - IAI47_20410 0.58 -1.9
323,116 - IAI47_20410 0.58 -1.5
323,131 + IAI47_20410 0.59 -0.3
323,131 + IAI47_20410 0.59 -0.5
323,132 - IAI47_20410 0.59 -2.5
323,132 - IAI47_20410 0.59 -0.9
323,187 + IAI47_20410 0.62 +0.1
323,187 + IAI47_20410 0.62 -0.0
323,187 + IAI47_20410 0.62 +0.1
323,188 - IAI47_20410 0.62 +0.1
323,192 + IAI47_20410 0.62 +1.0
323,192 + IAI47_20410 0.62 -0.2
323,193 - IAI47_20410 0.62 -0.9
323,193 - IAI47_20410 0.62 +1.2
323,193 - IAI47_20410 0.62 +0.1
323,205 + IAI47_20410 0.63 -1.7
323,205 + IAI47_20410 0.63 +0.1
323,205 + IAI47_20410 0.63 +0.5
323,205 + IAI47_20410 0.63 -1.9
323,205 + IAI47_20410 0.63 -0.0
323,206 - IAI47_20410 0.63 -1.9
323,206 - IAI47_20410 0.63 +1.4
323,206 - IAI47_20410 0.63 -0.9
323,291 + IAI47_20410 0.68 +1.1
323,291 + IAI47_20410 0.68 -0.3
323,291 + IAI47_20410 0.68 +1.7
323,292 - IAI47_20410 0.69 -0.9
323,292 - IAI47_20410 0.69 -1.3
323,292 - IAI47_20410 0.69 -1.8
323,292 - IAI47_20410 0.69 -1.5
323,315 + IAI47_20410 0.70 -0.6
323,315 + IAI47_20410 0.70 -0.4
323,383 + IAI47_20410 0.74 -1.8
323,422 + IAI47_20410 0.76 +1.0
323,423 - IAI47_20410 0.77 +1.1
323,482 + IAI47_20410 0.80 -0.9
323,500 - IAI47_20410 0.81 +0.1
323,564 + IAI47_20410 0.85 -0.5
323,564 + IAI47_20410 0.85 -0.6
323,564 + IAI47_20410 0.85 -0.3
323,751 + -0.7
323,752 - -0.4
323,752 - -1.8
323,752 - -0.6
323,752 - -0.2
323,752 - -2.9
323,755 + -1.9
323,816 + -1.7
323,816 + +1.5
323,816 + -1.2
323,816 + -2.2
323,817 - +0.1
323,860 + -1.5
323,860 + +0.8
323,860 + -2.0
323,861 - +0.7
323,862 + -2.1
323,909 + IAI47_20415 0.15 -0.9
323,957 + IAI47_20415 0.21 -2.5
323,974 + IAI47_20415 0.24 -1.5
323,974 + IAI47_20415 0.24 -1.1
323,974 + IAI47_20415 0.24 +0.1
323,974 + IAI47_20415 0.24 -1.1
323,974 + IAI47_20415 0.24 -3.1
323,974 + IAI47_20415 0.24 -1.5
323,974 + IAI47_20415 0.24 -1.6
323,975 - IAI47_20415 0.24 +0.1
323,975 - IAI47_20415 0.24 -0.5
323,975 - IAI47_20415 0.24 -3.6
323,975 - IAI47_20415 0.24 -0.5
323,975 - IAI47_20415 0.24 -1.3
323,975 - IAI47_20415 0.24 -1.4
323,975 - IAI47_20415 0.24 -0.9
323,975 - IAI47_20415 0.24 -3.4
323,975 - IAI47_20415 0.24 -2.2
323,975 - IAI47_20415 0.24 -1.5
323,975 - IAI47_20415 0.24 +0.4
323,976 + IAI47_20415 0.24 -0.3
323,976 + IAI47_20415 0.24 +0.1
323,976 + IAI47_20415 0.24 -1.7
323,976 + IAI47_20415 0.24 -1.2
323,977 - IAI47_20415 0.24 -1.5
323,977 - IAI47_20415 0.24 -1.9
323,977 - IAI47_20415 0.24 -1.9
323,977 - IAI47_20415 0.24 -2.9
323,977 - IAI47_20415 0.24 -1.5
324,045 + IAI47_20415 0.34 -1.9
324,046 - IAI47_20415 0.34 -2.5
324,046 - IAI47_20415 0.34 -0.9
324,094 + IAI47_20415 0.40 -2.1
324,095 - IAI47_20415 0.41 -0.9
324,095 - IAI47_20415 0.41 -2.4
324,095 - IAI47_20415 0.41 +0.6
324,095 - IAI47_20415 0.41 -2.1
324,095 - IAI47_20415 0.41 -0.4
324,101 + IAI47_20415 0.41 -1.5
324,102 - IAI47_20415 0.42 -1.9
324,109 + IAI47_20415 0.42 -1.2
324,109 + IAI47_20415 0.42 -2.5
324,109 + IAI47_20415 0.42 -0.9
324,110 - IAI47_20415 0.43 -1.5
324,110 - IAI47_20415 0.43 -2.2
324,186 + IAI47_20415 0.53 -0.9
324,199 + IAI47_20415 0.55 -0.9
324,199 + IAI47_20415 0.55 -3.5
324,200 - IAI47_20415 0.55 -0.9
324,200 - IAI47_20415 0.55 -2.0
324,369 + IAI47_20415 0.79 -2.1
324,370 - IAI47_20415 0.79 -2.5
324,370 - IAI47_20415 0.79 -1.2
324,370 - IAI47_20415 0.79 -1.6
324,418 - IAI47_20415 0.85 -2.7
324,421 - IAI47_20415 0.86 -3.1
324,436 - IAI47_20415 0.88 +3.3
324,436 - IAI47_20415 0.88 -1.2
324,442 + IAI47_20415 0.89 -2.2
324,442 + IAI47_20415 0.89 -0.5
324,442 + IAI47_20415 0.89 +0.7
324,442 + IAI47_20415 0.89 -1.1
324,443 - IAI47_20415 0.89 -2.7
324,443 - IAI47_20415 0.89 -1.4
324,467 - -1.5
324,490 + +0.1
324,500 + +1.4
324,501 - -0.2
324,511 + -3.1
324,511 + -1.9
324,511 + -0.5
324,511 + -0.7
324,512 - -1.5
324,512 - -1.8
324,546 + +0.4
324,626 + IAI47_20420 0.11 -1.9
324,626 + IAI47_20420 0.11 +0.8
324,627 - IAI47_20420 0.12 +0.8
324,660 + IAI47_20420 0.15 +0.1
324,660 + IAI47_20420 0.15 -0.3
324,660 + IAI47_20420 0.15 +0.1
324,661 - IAI47_20420 0.15 -0.5
324,661 - IAI47_20420 0.15 +0.1
324,661 - IAI47_20420 0.15 +2.0
324,667 + IAI47_20420 0.16 +1.1
324,667 + IAI47_20420 0.16 -0.2
324,667 + IAI47_20420 0.16 -2.2
324,668 - IAI47_20420 0.16 +0.1
324,682 + IAI47_20420 0.17 -1.1
324,682 + IAI47_20420 0.17 -0.4
324,682 + IAI47_20420 0.17 -1.1
324,682 + IAI47_20420 0.17 +1.4
324,683 - IAI47_20420 0.17 -0.8
324,683 - IAI47_20420 0.17 +1.3
324,683 - IAI47_20420 0.17 +1.2
324,683 - IAI47_20420 0.17 +0.4
324,811 + IAI47_20420 0.31 +0.1
324,811 + IAI47_20420 0.31 +1.1
324,811 + IAI47_20420 0.31 +0.7
324,812 - IAI47_20420 0.31 -0.9
324,956 + IAI47_20420 0.46 -1.3
324,957 - IAI47_20420 0.46 +1.1
324,972 - IAI47_20420 0.47 -1.9
324,972 - IAI47_20420 0.47 -0.7
324,999 + IAI47_20420 0.50 -1.9
324,999 + IAI47_20420 0.50 +0.3
325,000 - IAI47_20420 0.50 +1.0
325,000 - IAI47_20420 0.50 -1.5
325,000 - IAI47_20420 0.50 +0.1
325,002 + IAI47_20420 0.50 -1.2
325,002 + IAI47_20420 0.50 +1.4
325,002 + IAI47_20420 0.50 -1.5
325,002 + IAI47_20420 0.50 -0.2
325,003 - IAI47_20420 0.51 +0.1
325,003 - IAI47_20420 0.51 +0.9
325,003 - IAI47_20420 0.51 +1.1
325,003 - IAI47_20420 0.51 +0.5
325,003 - IAI47_20420 0.51 +1.1
325,003 - IAI47_20420 0.51 +0.4
325,003 - IAI47_20420 0.51 -0.4
325,003 - IAI47_20420 0.51 -0.4
325,003 - IAI47_20420 0.51 -0.4
325,003 - IAI47_20420 0.51 +1.1
325,013 + IAI47_20420 0.52 +0.5
325,013 + IAI47_20420 0.52 -0.1
325,014 - IAI47_20420 0.52 +1.1
325,015 + IAI47_20420 0.52 +0.1
325,015 + IAI47_20420 0.52 -0.6
325,015 + IAI47_20420 0.52 -0.3
325,015 + IAI47_20420 0.52 +0.8
325,015 + IAI47_20420 0.52 +1.4
325,015 + IAI47_20420 0.52 -0.1
325,015 + IAI47_20420 0.52 +0.0
325,016 - IAI47_20420 0.52 -2.7
325,208 + IAI47_20420 0.72 +1.4
325,209 - IAI47_20420 0.72 +2.1
325,308 - IAI47_20420 0.82 +0.4
325,438 - +0.4
325,450 + +1.1
325,450 + +1.1
325,450 + +1.1
325,450 + +2.4
325,450 + -0.6
325,451 - -1.0
325,451 - +0.1
325,451 - -1.2
325,456 + -0.5
325,456 + +0.1
325,456 + -0.7
325,456 + -0.9
325,457 - +0.8
325,457 - +0.5
325,457 - -1.5
325,457 - +0.1
325,457 - -1.1
325,457 - -0.5
325,457 - -1.7
325,473 + -0.3
325,473 + +2.7
325,473 + +0.7
325,474 - +0.5
325,474 - +0.1
325,474 - +1.0
325,478 + -0.8
325,479 - +0.1
325,479 - +0.1
325,479 - -0.1
325,497 + -1.5
325,498 - -0.1

Or see this region's nucleotide sequence