Strain Fitness in Pantoea sp. MT58 around IAI47_18045

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,838,593	+		IAI47_18040	0.42	-2.3
3,838,593	+		IAI47_18040	0.42	-1.7
3,838,593	+		IAI47_18040	0.42	-3.0
3,838,594	-		IAI47_18040	0.42	-2.5
3,838,613	-		IAI47_18040	0.43	-1.7
3,838,645	+		IAI47_18040	0.45	-1.7
3,838,645	+		IAI47_18040	0.45	-2.5
3,838,645	+		IAI47_18040	0.45	-2.5
3,838,645	+		IAI47_18040	0.45	-2.5
3,838,645	+		IAI47_18040	0.45	-4.0
3,838,645	+		IAI47_18040	0.45	-2.7
3,838,645	+		IAI47_18040	0.45	-2.3
3,838,645	+		IAI47_18040	0.45	-2.0
3,838,645	+		IAI47_18040	0.45	-1.7
3,838,645	+		IAI47_18040	0.45	-3.3
3,838,645	+		IAI47_18040	0.45	-1.7
3,838,645	+		IAI47_18040	0.45	-1.7
3,838,645	+		IAI47_18040	0.45	-3.2
3,838,646	-		IAI47_18040	0.45	-1.7
3,838,646	-		IAI47_18040	0.45	-5.4
3,838,646	-		IAI47_18040	0.45	-3.6
3,838,646	-		IAI47_18040	0.45	-2.9
3,838,646	-		IAI47_18040	0.45	-3.5
3,838,646	-		IAI47_18040	0.45	-2.7
3,838,646	-		IAI47_18040	0.45	-1.7
3,838,646	-		IAI47_18040	0.45	-1.3
3,838,646	-		IAI47_18040	0.45	-2.5
3,838,646	-		IAI47_18040	0.45	-1.3
3,838,646	-		IAI47_18040	0.45	-1.7
3,838,646	-		IAI47_18040	0.45	-1.7
3,838,646	-		IAI47_18040	0.45	-1.7
3,838,646	-		IAI47_18040	0.45	-3.7
3,838,647	+		IAI47_18040	0.45	-3.5
3,838,647	+		IAI47_18040	0.45	-4.2
3,838,647	+		IAI47_18040	0.45	-3.9
3,838,648	-		IAI47_18040	0.45	-1.7
3,838,649	+		IAI47_18040	0.45	-1.3
3,838,649	+		IAI47_18040	0.45	-1.7
3,838,649	+		IAI47_18040	0.45	-3.0
3,838,649	+		IAI47_18040	0.45	-3.7
3,838,649	+		IAI47_18040	0.45	-3.0
3,838,649	+		IAI47_18040	0.45	-3.0
3,838,649	+		IAI47_18040	0.45	-2.0
3,838,649	+		IAI47_18040	0.45	-3.5
3,838,650	-		IAI47_18040	0.45	-1.7
3,838,650	-		IAI47_18040	0.45	-1.7
3,838,650	-		IAI47_18040	0.45	-2.3
3,838,650	-		IAI47_18040	0.45	-3.9
3,838,650	-		IAI47_18040	0.45	-2.5
3,838,650	-		IAI47_18040	0.45	-1.7
3,838,650	-		IAI47_18040	0.45	-2.5
3,838,659	+		IAI47_18040	0.46	-3.4
3,838,659	+		IAI47_18040	0.46	-3.7
3,838,660	-		IAI47_18040	0.46	-2.0
3,838,660	-		IAI47_18040	0.46	-2.7
3,838,660	-		IAI47_18040	0.46	-1.3
3,838,714	+		IAI47_18040	0.49	-3.2
3,838,714	+		IAI47_18040	0.49	-2.3
3,838,714	+		IAI47_18040	0.49	-0.7
3,838,714	+		IAI47_18040	0.49	-1.3
3,838,715	-		IAI47_18040	0.49	-1.7
3,838,715	-		IAI47_18040	0.49	-2.5
3,838,716	+		IAI47_18040	0.49	-3.3
3,838,722	+		IAI47_18040	0.50	-3.2
3,838,722	+		IAI47_18040	0.50	-3.3
3,838,722	+		IAI47_18040	0.50	-1.7
3,838,722	+		IAI47_18040	0.50	-0.7
3,838,722	+		IAI47_18040	0.50	-2.0
3,838,722	+		IAI47_18040	0.50	-2.9
3,838,722	+		IAI47_18040	0.50	-2.0
3,838,723	-		IAI47_18040	0.50	-1.3
3,838,723	-		IAI47_18040	0.50	-3.6
3,838,723	-		IAI47_18040	0.50	-2.5
3,838,723	-		IAI47_18040	0.50	-3.0
3,838,723	-		IAI47_18040	0.50	-2.3
3,838,723	-		IAI47_18040	0.50	-1.3
3,838,840	+		IAI47_18040	0.57	-3.0
3,838,840	+		IAI47_18040	0.57	-4.5
3,838,841	-		IAI47_18040	0.57	-2.3
3,838,841	-		IAI47_18040	0.57	-2.9
3,838,841	-		IAI47_18040	0.57	-1.7
3,838,841	-		IAI47_18040	0.57	-3.7
3,838,852	+		IAI47_18040	0.58	-2.7
3,838,853	-		IAI47_18040	0.58	-4.2
3,838,933	-		IAI47_18040	0.63	-2.5
3,839,005	-		IAI47_18040	0.68	-3.4
3,839,049	+		IAI47_18040	0.70	-0.7
3,839,049	+		IAI47_18040	0.70	-2.3
3,839,050	-		IAI47_18040	0.70	-3.0
3,839,211	+		IAI47_18040	0.81	-3.9
3,839,212	-		IAI47_18040	0.81	-2.9
3,839,212	-		IAI47_18040	0.81	-1.3
3,839,212	-		IAI47_18040	0.81	-2.9
3,839,212	-		IAI47_18040	0.81	+0.3
3,839,212	-		IAI47_18040	0.81	-2.7
3,839,230	+		IAI47_18040	0.82	-3.6
3,839,230	+		IAI47_18040	0.82	-2.5
3,839,230	+		IAI47_18040	0.82	-5.0
3,839,230	+		IAI47_18040	0.82	-3.2
3,839,256	+		IAI47_18040	0.83	-1.3
3,839,256	+		IAI47_18040	0.83	-3.5
3,839,257	-		IAI47_18040	0.83	-2.9
3,839,258	+		IAI47_18040	0.83	-1.7
3,839,258	+		IAI47_18040	0.83	-2.7
3,839,258	+		IAI47_18040	0.83	-3.3
3,839,258	+		IAI47_18040	0.83	-1.7
3,839,259	-		IAI47_18040	0.84	-4.0
3,839,259	-		IAI47_18040	0.84	-2.7
3,839,259	-		IAI47_18040	0.84	-2.3
3,839,259	-		IAI47_18040	0.84	-3.2
3,839,259	-		IAI47_18040	0.84	-2.9
3,839,285	-		IAI47_18040	0.85	-1.3
3,839,305	-		IAI47_18040	0.86	-4.1
3,839,305	-		IAI47_18040	0.86	-3.0
3,839,305	-		IAI47_18040	0.86	-3.2
3,839,419	-				-2.5
3,839,419	-				-2.0
3,839,518	+				+1.5
3,839,518	+				+1.6
3,839,519	-				-4.3
3,839,519	-				-1.9
3,839,519	-				-3.2
3,839,535	-				-3.0
3,839,550	+				-2.5
3,839,655	+				-3.7
3,839,655	+				-3.4
3,839,655	+				-0.7
3,839,655	+				-2.0
3,839,655	+				-1.7
3,839,656	-				-3.5
3,839,656	-				-2.7
3,839,656	-				-0.7
3,839,675	-		IAI47_18045	0.11	-2.0
3,839,794	+		IAI47_18045	0.20	-1.3
3,839,809	+		IAI47_18045	0.21	-1.3
3,839,809	+		IAI47_18045	0.21	-3.9
3,839,810	-		IAI47_18045	0.21	-4.8
3,839,810	-		IAI47_18045	0.21	-3.2
3,839,851	+		IAI47_18045	0.24	-2.9
3,839,852	-		IAI47_18045	0.24	-0.7
3,839,852	-		IAI47_18045	0.24	-0.7
3,839,852	-		IAI47_18045	0.24	-3.5
3,839,915	-		IAI47_18045	0.29	-3.0
3,839,940	-		IAI47_18045	0.31	+0.3
3,839,940	-		IAI47_18045	0.31	-2.9
3,839,995	+		IAI47_18045	0.36	-0.7
3,839,995	+		IAI47_18045	0.36	+0.3
3,839,995	+		IAI47_18045	0.36	-2.9
3,839,995	+		IAI47_18045	0.36	-3.8
3,839,996	-		IAI47_18045	0.36	-2.5
3,839,996	-		IAI47_18045	0.36	-0.7
3,840,006	+		IAI47_18045	0.36	-1.3
3,840,007	-		IAI47_18045	0.36	-3.0
3,840,007	-		IAI47_18045	0.36	-2.5
3,840,049	+		IAI47_18045	0.40	-0.7
3,840,050	-		IAI47_18045	0.40	-3.0
3,840,050	-		IAI47_18045	0.40	-4.6
3,840,050	-		IAI47_18045	0.40	-3.4
3,840,050	-		IAI47_18045	0.40	-4.5
3,840,256	+		IAI47_18045	0.56	+0.3
3,840,335	+		IAI47_18045	0.62	-1.7
3,840,336	-		IAI47_18045	0.62	-3.9
3,840,336	-		IAI47_18045	0.62	-3.0
3,840,336	-		IAI47_18045	0.62	-3.2
3,840,373	+		IAI47_18045	0.65	-1.3
3,840,373	+		IAI47_18045	0.65	-1.7
3,840,373	+		IAI47_18045	0.65	-3.3
3,840,374	-		IAI47_18045	0.65	-1.7
3,840,374	-		IAI47_18045	0.65	+0.3
3,840,491	-		IAI47_18045	0.74	-2.5
3,840,573	-		IAI47_18045	0.81	-3.7
3,840,573	-		IAI47_18045	0.81	-2.7
3,840,573	-		IAI47_18045	0.81	-4.7
3,840,573	-		IAI47_18045	0.81	-1.3
3,840,573	-		IAI47_18045	0.81	-3.7
3,840,625	+		IAI47_18045	0.85	-2.0
3,840,630	+		IAI47_18045	0.85	-2.9
3,840,630	+		IAI47_18045	0.85	-5.1
3,840,630	+		IAI47_18045	0.85	-1.7
3,840,630	+		IAI47_18045	0.85	-3.7
3,840,630	+		IAI47_18045	0.85	+0.3
3,840,630	+		IAI47_18045	0.85	-1.3
3,840,630	+		IAI47_18045	0.85	-2.3
3,840,630	+		IAI47_18045	0.85	-2.9
3,840,630	+		IAI47_18045	0.85	-1.7
3,840,630	+		IAI47_18045	0.85	-2.0
3,840,631	-		IAI47_18045	0.85	-2.7
3,840,631	-		IAI47_18045	0.85	-2.3
3,840,631	-		IAI47_18045	0.85	-4.2
3,840,631	-		IAI47_18045	0.85	-2.0
3,840,631	-		IAI47_18045	0.85	-3.0
3,840,717	+				-2.5
3,840,717	+				-4.4
3,840,717	+				-3.0
3,840,717	+				-1.3
3,840,718	-				-2.7
3,840,718	-				-3.3
3,840,718	-				-1.3
3,840,718	-				-5.4
3,840,740	+				-2.7
3,840,741	-				-2.0
3,840,741	-				-2.9
3,840,741	-				-0.7
3,840,772	+				-2.0
3,840,772	+				-2.5
3,840,772	+				-3.3
3,840,773	-				-2.3
3,840,773	-				-2.5
3,840,773	-				-3.2
3,840,773	-				-1.7
3,840,790	+				-0.7
3,840,808	+				-0.1
3,840,814	+				+0.5
3,840,814	+				-0.2
3,840,814	+				+0.7
3,840,814	+				-0.6
3,840,814	+				+1.4
3,840,814	+				-1.1
3,840,814	+				-0.7
3,840,815	-				-2.5
3,840,818	+				+0.1
3,840,818	+				+0.3
3,840,818	+				+0.0
3,840,819	-				+0.9
3,840,819	-				+0.1
3,840,858	+				-0.6
3,840,858	+				+1.9
3,840,858	+				-0.4
3,840,858	+				+0.4
3,840,858	+				-1.0
3,840,858	+				+1.7
3,840,858	+				-0.0
3,840,859	-				-0.8
3,840,859	-				-0.1
3,840,859	-				+0.2
3,840,916	+				-0.4
3,840,917	-				-0.3
3,840,979	+		IAI47_18050	0.19	-1.7
3,840,979	+		IAI47_18050	0.19	-0.0
3,840,979	+		IAI47_18050	0.19	-0.7
3,840,979	+		IAI47_18050	0.19	+0.5
3,840,980	-		IAI47_18050	0.19	-0.3
3,840,980	-		IAI47_18050	0.19	-0.7
3,841,093	+		IAI47_18050	0.36	+0.1
3,841,093	+		IAI47_18050	0.36	-0.3
3,841,137	+		IAI47_18050	0.43	-0.3
3,841,137	+		IAI47_18050	0.43	+0.1
3,841,137	+		IAI47_18050	0.43	+0.7
3,841,137	+		IAI47_18050	0.43	+0.3
3,841,137	+		IAI47_18050	0.43	+2.6
3,841,138	-		IAI47_18050	0.43	+1.9
3,841,138	-		IAI47_18050	0.43	+1.1
3,841,138	-		IAI47_18050	0.43	+2.4
3,841,138	-		IAI47_18050	0.43	-1.7
3,841,138	-		IAI47_18050	0.43	+0.8
3,841,138	-		IAI47_18050	0.43	-1.7
3,841,138	-		IAI47_18050	0.43	+2.1
3,841,139	+		IAI47_18050	0.43	+0.7
3,841,139	+		IAI47_18050	0.43	-1.0
3,841,139	+		IAI47_18050	0.43	+0.4
3,841,139	+		IAI47_18050	0.43	+1.4
3,841,139	+		IAI47_18050	0.43	-2.3
3,841,140	-		IAI47_18050	0.43	+0.6
3,841,140	-		IAI47_18050	0.43	-0.1
3,841,258	+		IAI47_18050	0.61	-0.0
3,841,258	+		IAI47_18050	0.61	+0.3
3,841,258	+		IAI47_18050	0.61	-0.9
3,841,259	-		IAI47_18050	0.61	-0.9
3,841,301	+		IAI47_18050	0.68	-0.0
3,841,301	+		IAI47_18050	0.68	-0.4
3,841,301	+		IAI47_18050	0.68	-1.7
3,841,301	+		IAI47_18050	0.68	-0.3
3,841,301	+		IAI47_18050	0.68	-1.3
3,841,301	+		IAI47_18050	0.68	+0.0
3,841,301	+		IAI47_18050	0.68	+0.7
3,841,301	+		IAI47_18050	0.68	+0.3
3,841,302	-		IAI47_18050	0.68	+0.2
3,841,302	-		IAI47_18050	0.68	-0.0
3,841,302	-		IAI47_18050	0.68	-0.3
3,841,338	+		IAI47_18050	0.73	+0.0
3,841,338	+		IAI47_18050	0.73	-0.2
3,841,338	+		IAI47_18050	0.73	+0.5
3,841,338	+		IAI47_18050	0.73	-2.5
3,841,338	+		IAI47_18050	0.73	+0.3
3,841,338	+		IAI47_18050	0.73	-1.3
3,841,338	+		IAI47_18050	0.73	-0.2
3,841,338	+		IAI47_18050	0.73	+2.5
3,841,338	+		IAI47_18050	0.73	+0.2
3,841,338	+		IAI47_18050	0.73	+0.2
3,841,338	+		IAI47_18050	0.73	-0.3
3,841,338	+		IAI47_18050	0.73	+1.3
3,841,338	+		IAI47_18050	0.73	+0.6
3,841,338	+		IAI47_18050	0.73	+1.1
3,841,338	+		IAI47_18050	0.73	+0.0
3,841,338	+		IAI47_18050	0.73	+0.7
3,841,339	-		IAI47_18050	0.73	-1.9
3,841,339	-		IAI47_18050	0.73	-1.4
3,841,339	-		IAI47_18050	0.73	-1.4
3,841,339	-		IAI47_18050	0.73	+1.0
3,841,339	-		IAI47_18050	0.73	-0.2
3,841,339	-		IAI47_18050	0.73	-0.3
3,841,339	-		IAI47_18050	0.73	+0.0
3,841,339	-		IAI47_18050	0.73	+0.0
3,841,340	+		IAI47_18050	0.73	-2.0
3,841,340	+		IAI47_18050	0.73	+0.1
3,841,340	+		IAI47_18050	0.73	-0.1
3,841,340	+		IAI47_18050	0.73	+0.6
3,841,340	+		IAI47_18050	0.73	+0.6
3,841,341	-		IAI47_18050	0.74	-2.9
3,841,341	-		IAI47_18050	0.74	+0.8
3,841,341	-		IAI47_18050	0.74	-1.6
3,841,341	-		IAI47_18050	0.74	-0.0
3,841,374	+		IAI47_18050	0.79	-0.8
3,841,389	+		IAI47_18050	0.81	+1.4
3,841,389	+		IAI47_18050	0.81	+0.1
3,841,390	-		IAI47_18050	0.81	+0.3
3,841,415	+		IAI47_18050	0.85	+2.0
3,841,416	-		IAI47_18050	0.85	-0.3
3,841,416	-		IAI47_18050	0.85	-0.4
3,841,416	-		IAI47_18050	0.85	+0.3
3,841,489	-				+2.1
3,841,567	+				+0.5
3,841,568	-				-0.4
3,841,568	-				+2.5
3,841,568	-				+1.7
3,841,586	+				+0.7
3,841,587	-				+1.8
3,841,587	-				+1.3
3,841,587	-				+1.2
3,841,587	-				+0.9
3,841,587	-				+0.2
3,841,587	-				+0.3
3,841,590	+				+0.4
3,841,590	+				+1.2
3,841,590	+				+1.6
3,841,591	-				+1.3
3,841,591	-				+0.1
3,841,611	+				+1.0
3,841,611	+				+0.6
3,841,631	-		IAI47_18055	0.17	+0.5
3,841,708	-		IAI47_18055	0.45	+0.8
3,841,714	-		IAI47_18055	0.47	+0.3
3,841,714	-		IAI47_18055	0.47	+0.6
3,841,732	+		IAI47_18055	0.54	+1.3
3,841,733	-		IAI47_18055	0.54	-0.5
3,841,733	-		IAI47_18055	0.54	+0.2
3,841,733	-		IAI47_18055	0.54	+0.5
3,841,733	-		IAI47_18055	0.54	+1.1
3,841,733	-		IAI47_18055	0.54	+1.0
3,841,733	-		IAI47_18055	0.54	-0.1
3,841,776	+		IAI47_18055	0.70	+0.5
3,841,776	+		IAI47_18055	0.70	+0.3
3,841,776	+		IAI47_18055	0.70	+0.9
3,841,777	-		IAI47_18055	0.70	+1.3
3,841,806	+		IAI47_18055	0.81	-0.5