Strain Fitness in Pantoea sp. MT58 around IAI47_14810

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,121,518	-		IAI47_14805	0.37	+0.3
3,121,564	-		IAI47_14805	0.41	-1.5
3,121,564	-		IAI47_14805	0.41	-1.9
3,121,634	-		IAI47_14805	0.47	-0.7
3,121,687	-		IAI47_14805	0.52	-0.0
3,121,687	-		IAI47_14805	0.52	-1.9
3,121,707	+		IAI47_14805	0.53	-0.7
3,121,781	+		IAI47_14805	0.60	+0.3
3,121,782	-		IAI47_14805	0.60	+0.3
3,121,782	-		IAI47_14805	0.60	-0.3
3,121,806	+		IAI47_14805	0.62	+1.3
3,121,807	-		IAI47_14805	0.62	+0.3
3,121,807	-		IAI47_14805	0.62	-0.9
3,121,807	-		IAI47_14805	0.62	-1.0
3,121,807	-		IAI47_14805	0.62	-1.3
3,121,807	-		IAI47_14805	0.62	-0.7
3,121,807	-		IAI47_14805	0.62	-0.9
3,121,847	+		IAI47_14805	0.66	+0.3
3,121,905	+		IAI47_14805	0.71	-2.9
3,122,070	+		IAI47_14805	0.85	+0.7
3,122,070	+		IAI47_14805	0.85	-1.3
3,122,070	+		IAI47_14805	0.85	-0.2
3,122,070	+		IAI47_14805	0.85	-0.3
3,122,071	-		IAI47_14805	0.85	-2.5
3,122,071	-		IAI47_14805	0.85	-1.3
3,122,071	-		IAI47_14805	0.85	-0.7
3,122,071	-		IAI47_14805	0.85	-2.0
3,122,071	-		IAI47_14805	0.85	+0.3
3,122,138	+				-1.1
3,122,138	+				+1.7
3,122,139	-				-2.7
3,122,220	+				-0.3
3,122,220	+				-1.5
3,122,220	+				-0.7
3,122,220	+				-0.7
3,122,221	-				-0.1
3,122,224	-				-1.1
3,122,224	-				+2.2
3,122,271	+				-0.1
3,122,271	+				-1.5
3,122,271	+				-2.5
3,122,272	-				-1.3
3,122,272	-				-0.1
3,122,272	-				+0.4
3,122,272	-				+2.0
3,122,272	-				+2.3
3,122,272	-				-0.3
3,122,272	-				-1.5
3,122,272	-				-0.6
3,122,272	-				-0.3
3,122,272	-				+0.8
3,122,273	+				+0.5
3,122,273	+				+0.7
3,122,274	-				-0.5
3,122,274	-				+0.3
3,122,287	+				-0.1
3,122,287	+				+1.3
3,122,287	+				+0.3
3,122,288	-				-0.9
3,122,288	-				-0.7
3,122,288	-				-0.5
3,122,288	-				+0.8
3,122,290	+				+0.9
3,122,290	+				-0.1
3,122,291	-				-0.0
3,122,291	-				+0.6
3,122,315	+				+0.7
3,122,315	+				+0.0
3,122,315	+				-1.0
3,122,364	-				-0.3
3,122,380	+				-0.1
3,122,381	-				-0.7
3,122,381	-				-2.0
3,122,396	-				+1.9
3,122,419	+				+0.3
3,122,419	+				+0.1
3,122,465	+		IAI47_14810	0.14	+0.3
3,122,465	+		IAI47_14810	0.14	+3.1
3,122,465	+		IAI47_14810	0.14	-1.3
3,122,465	+		IAI47_14810	0.14	-1.7
3,122,466	-		IAI47_14810	0.14	-1.7
3,122,521	+		IAI47_14810	0.19	-0.1
3,122,521	+		IAI47_14810	0.19	+0.3
3,122,522	-		IAI47_14810	0.19	+0.9
3,122,522	-		IAI47_14810	0.19	+0.7
3,122,522	-		IAI47_14810	0.19	-0.7
3,122,522	-		IAI47_14810	0.19	+1.0
3,122,527	+		IAI47_14810	0.19	-1.3
3,122,537	-		IAI47_14810	0.20	-1.6
3,122,537	-		IAI47_14810	0.20	-1.3
3,122,646	-		IAI47_14810	0.31	-1.0
3,122,646	-		IAI47_14810	0.31	+0.3
3,122,661	-		IAI47_14810	0.32	-0.7
3,122,705	-		IAI47_14810	0.36	+0.1
3,122,885	-		IAI47_14810	0.53	+0.8
3,122,897	-		IAI47_14810	0.54	-1.0
3,122,934	-		IAI47_14810	0.57	-0.1
3,122,934	-		IAI47_14810	0.57	-1.6
3,122,934	-		IAI47_14810	0.57	-0.3
3,122,935	+		IAI47_14810	0.58	-0.9
3,122,935	+		IAI47_14810	0.58	-1.0
3,122,936	-		IAI47_14810	0.58	+0.7
3,122,936	-		IAI47_14810	0.58	-0.7
3,122,936	-		IAI47_14810	0.58	-0.5
3,122,951	+		IAI47_14810	0.59	-0.9
3,122,952	-		IAI47_14810	0.59	-0.0
3,122,952	-		IAI47_14810	0.59	-1.1
3,122,952	-		IAI47_14810	0.59	-0.3
3,122,972	+		IAI47_14810	0.61	-1.6
3,123,013	-		IAI47_14810	0.65	-0.5
3,123,126	-		IAI47_14810	0.75	+0.7
3,123,126	-		IAI47_14810	0.75	-0.2
3,123,145	-		IAI47_14810	0.77	-1.4
3,123,176	+		IAI47_14810	0.80	-0.7
3,123,177	-		IAI47_14810	0.80	-1.6
3,123,246	-		IAI47_14810	0.87	-1.6
3,123,337	+				+0.3
3,123,338	-				+1.0
3,123,467	+				+0.3
3,123,467	+				-0.3
3,123,468	-				+0.5
3,123,482	+				+0.6
3,123,482	+				-1.4
3,123,482	+				+1.7
3,123,482	+				+0.4
3,123,483	-				+0.4
3,123,483	-				+0.6
3,123,483	-				-0.7
3,123,483	-				-0.0
3,123,484	+				-0.7
3,123,522	+				+2.9
3,123,523	-				-2.9
3,123,542	+				+0.9
3,123,543	-				-0.9
3,123,555	-		IAI47_14815	0.11	-0.6
3,123,555	-		IAI47_14815	0.11	-0.0
3,123,555	-		IAI47_14815	0.11	-0.7
3,123,555	-		IAI47_14815	0.11	-0.5
3,123,721	-		IAI47_14815	0.39	-1.3
3,123,837	+		IAI47_14815	0.59	+0.8
3,123,837	+		IAI47_14815	0.59	-0.5
3,123,837	+		IAI47_14815	0.59	+0.3
3,123,838	-		IAI47_14815	0.59	-0.1
3,123,898	+		IAI47_14815	0.70	-0.8
3,123,898	+		IAI47_14815	0.70	+1.5
3,123,899	-		IAI47_14815	0.70	-0.3
3,123,979	+		IAI47_14815	0.84	-0.2
3,123,979	+		IAI47_14815	0.84	-1.0
3,123,979	+		IAI47_14815	0.84	+1.9
3,123,980	-		IAI47_14815	0.84	+0.1
3,123,980	-		IAI47_14815	0.84	+0.3
3,123,980	-		IAI47_14815	0.84	-1.9
3,123,980	-		IAI47_14815	0.84	+0.3
3,124,000	+		IAI47_14815	0.87	+1.4
3,124,000	+		IAI47_14815	0.87	+0.3
3,124,000	+		IAI47_14815	0.87	+1.9
3,124,000	+		IAI47_14815	0.87	-1.6
3,124,000	+		IAI47_14815	0.87	+0.1
3,124,000	+		IAI47_14815	0.87	+3.9
3,124,000	+		IAI47_14815	0.87	+0.9
3,124,000	+		IAI47_14815	0.87	+0.6
3,124,001	-		IAI47_14815	0.87	-1.7
3,124,001	-		IAI47_14815	0.87	+1.5
3,124,001	-		IAI47_14815	0.87	-0.7
3,124,001	-		IAI47_14815	0.87	+1.3
3,124,027	-				-1.7
3,124,044	-				+1.4
3,124,072	+				+1.9
3,124,072	+				+1.3
3,124,072	+				+1.1
3,124,123	+				-0.9
3,124,169	-				-0.3
3,124,169	-				+0.5
3,124,179	+				-1.3
3,124,179	+				+0.3
3,124,179	+				+0.9
3,124,179	+				+0.3
3,124,200	+				-0.0
3,124,200	+				+0.5
3,124,200	+				+0.7
3,124,200	+				+1.6
3,124,200	+				-0.3
3,124,201	-				-1.3
3,124,201	-				+0.1
3,124,201	-				-0.5
3,124,201	-				-0.3
3,124,205	-				+0.4
3,124,205	-				-0.7
3,124,205	-				-0.4
3,124,205	-				-0.1
3,124,215	+				-0.4
3,124,215	+				-0.1
3,124,216	-				+0.3
3,124,270	+				-0.1
3,124,307	+				-2.3
3,124,307	+				-1.1
3,124,324	+				+0.3
3,124,372	+		IAI47_14820	0.11	-0.7
3,124,372	+		IAI47_14820	0.11	-2.0