Strain Fitness in Pantoea sp. MT58 around IAI47_13775

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,917,360	-		IAI47_13770	0.55	-1.3
2,917,360	-		IAI47_13770	0.55	-4.6
2,917,370	+		IAI47_13770	0.56	-3.9
2,917,370	+		IAI47_13770	0.56	-2.5
2,917,370	+		IAI47_13770	0.56	-2.0
2,917,370	+		IAI47_13770	0.56	-1.7
2,917,370	+		IAI47_13770	0.56	+0.3
2,917,370	+		IAI47_13770	0.56	-2.7
2,917,371	-		IAI47_13770	0.56	-2.5
2,917,371	-		IAI47_13770	0.56	-2.5
2,917,374	+		IAI47_13770	0.56	-2.3
2,917,410	+		IAI47_13770	0.59	-2.0
2,917,476	+		IAI47_13770	0.64	-2.3
2,917,477	-		IAI47_13770	0.64	-3.4
2,917,477	-		IAI47_13770	0.64	-0.7
2,917,477	-		IAI47_13770	0.64	-3.8
2,917,477	-		IAI47_13770	0.64	-1.7
2,917,579	+		IAI47_13770	0.72	-1.7
2,917,579	+		IAI47_13770	0.72	-2.9
2,917,588	+		IAI47_13770	0.73	-2.0
2,917,589	-		IAI47_13770	0.73	-0.7
2,917,607	+		IAI47_13770	0.74	-2.3
2,917,708	+		IAI47_13770	0.82	-4.1
2,917,708	+		IAI47_13770	0.82	-1.7
2,917,708	+		IAI47_13770	0.82	-1.7
2,917,708	+		IAI47_13770	0.82	-3.0
2,917,713	+		IAI47_13770	0.82	-2.3
2,917,713	+		IAI47_13770	0.82	-3.2
2,917,722	+		IAI47_13770	0.83	-2.3
2,917,747	+		IAI47_13770	0.85	-2.0
2,917,747	+		IAI47_13770	0.85	-1.3
2,917,748	-		IAI47_13770	0.85	-3.4
2,917,748	-		IAI47_13770	0.85	-2.9
2,917,748	-		IAI47_13770	0.85	-4.0
2,917,748	-		IAI47_13770	0.85	-2.3
2,917,794	+		IAI47_13770	0.89	-2.0
2,917,794	+		IAI47_13770	0.89	-3.3
2,917,795	-		IAI47_13770	0.89	+0.3
2,917,819	-				-2.7
2,917,891	+				-5.6
2,917,902	+				-2.7
2,917,902	+				-2.5
2,917,902	+				-3.0
2,917,902	+				-0.7
2,917,903	-				-1.7
2,917,903	-				-2.7
2,917,976	+				-1.7
2,917,976	+				+0.6
2,917,976	+				-0.7
2,918,002	+				-0.4
2,918,081	+				+0.9
2,918,081	+				+1.3
2,918,206	-				-0.6
2,918,210	+				+0.1
2,918,211	-				-0.9
2,918,211	-				-1.7
2,918,211	-				+0.0
2,918,211	-				+0.6
2,918,215	+				+1.9
2,918,215	+				-0.1
2,918,216	-				-0.1
2,918,216	-				+0.3
2,918,216	-				+1.8
2,918,216	-				-0.7
2,918,216	-				-0.8
2,918,216	-				-0.1
2,918,216	-				+0.8
2,918,216	-				+0.6
2,918,221	+				-0.1
2,918,221	+				-0.9
2,918,221	+				+0.1
2,918,221	+				+1.7
2,918,222	-				-0.2
2,918,222	-				+1.3
2,918,223	+				+0.2
2,918,223	+				-1.3
2,918,223	+				-0.9
2,918,224	-				-0.9
2,918,224	-				-0.2
2,918,255	+				+0.0
2,918,255	+				-0.1
2,918,256	-				-0.2
2,918,256	-				-1.7
2,918,280	+				+1.0
2,918,287	+				-0.9
2,918,287	+				+0.2
2,918,287	+				+0.3
2,918,288	-				+0.9
2,918,288	-				+1.5
2,918,311	+				+0.3
2,918,311	+				+1.9
2,918,312	-				-1.0
2,918,312	-				-0.2
2,918,312	-				-0.6
2,918,420	-		IAI47_13775	0.17	-0.9
2,918,420	-		IAI47_13775	0.17	+0.6
2,918,420	-		IAI47_13775	0.17	+1.5
2,918,420	-		IAI47_13775	0.17	+0.7
2,918,420	-		IAI47_13775	0.17	+0.8
2,918,566	+		IAI47_13775	0.35	+0.7
2,918,567	-		IAI47_13775	0.36	-2.5
2,918,729	+		IAI47_13775	0.56	+0.6
2,918,729	+		IAI47_13775	0.56	+0.7
2,918,730	-		IAI47_13775	0.56	-0.8
2,918,738	+		IAI47_13775	0.57	+1.0
2,918,750	+		IAI47_13775	0.59	-1.3
2,918,751	-		IAI47_13775	0.59	-0.7
2,918,751	-		IAI47_13775	0.59	-0.7
2,918,764	+		IAI47_13775	0.61	-2.7
2,918,765	-		IAI47_13775	0.61	+0.5
2,918,789	+		IAI47_13775	0.64	+2.0
2,918,860	+		IAI47_13775	0.73	-0.7
2,918,860	+		IAI47_13775	0.73	-1.5
2,918,861	-		IAI47_13775	0.73	+0.1
2,918,871	-		IAI47_13775	0.74	-2.0
2,918,871	-		IAI47_13775	0.74	+0.0
2,918,878	+		IAI47_13775	0.75	-1.0
2,918,879	-		IAI47_13775	0.75	-0.2
2,918,918	+		IAI47_13775	0.80	+0.0
2,918,968	+		IAI47_13775	0.86	-0.4
2,918,968	+		IAI47_13775	0.86	+0.7
2,918,968	+		IAI47_13775	0.86	-0.0
2,918,968	+		IAI47_13775	0.86	+1.4
2,918,968	+		IAI47_13775	0.86	-0.3
2,918,969	-		IAI47_13775	0.87	+0.0
2,918,969	-		IAI47_13775	0.87	-0.9
2,918,969	-		IAI47_13775	0.87	-0.6
2,918,969	-		IAI47_13775	0.87	+0.0
2,918,969	-		IAI47_13775	0.87	+1.0
2,919,039	-				+2.3
2,919,087	+				+1.2
2,919,087	+				-0.4
2,919,087	+				+0.0
2,919,087	+				-0.7
2,919,087	+				+1.1
2,919,088	-				+1.9
2,919,088	-				+0.5
2,919,088	-				-0.0
2,919,088	-				-1.3
2,919,112	+				+0.4
2,919,112	+				+0.7
2,919,112	+				+0.4
2,919,112	+				-1.2
2,919,112	+				+1.4
2,919,112	+				-1.0
2,919,112	+				+0.3
2,919,112	+				+0.7
2,919,113	-				+0.8
2,919,113	-				+2.0
2,919,115	+				+0.7
2,919,166	+		IAI47_13780	0.12	+0.7
2,919,226	-		IAI47_13780	0.22	+0.3
2,919,226	-		IAI47_13780	0.22	-1.0
2,919,232	+		IAI47_13780	0.23	-0.5
2,919,232	+		IAI47_13780	0.23	-0.2
2,919,232	+		IAI47_13780	0.23	-1.2
2,919,232	+		IAI47_13780	0.23	+1.3
2,919,233	-		IAI47_13780	0.23	-1.0
2,919,238	+		IAI47_13780	0.23	+1.7
2,919,238	+		IAI47_13780	0.23	-1.2
2,919,238	+		IAI47_13780	0.23	+0.3
2,919,239	-		IAI47_13780	0.24	+1.9
2,919,239	-		IAI47_13780	0.24	+2.5
2,919,291	+		IAI47_13780	0.32	-1.0
2,919,291	+		IAI47_13780	0.32	-0.5
2,919,291	+		IAI47_13780	0.32	-0.1
2,919,291	+		IAI47_13780	0.32	+1.3
2,919,291	+		IAI47_13780	0.32	+0.1
2,919,291	+		IAI47_13780	0.32	+0.6
2,919,291	+		IAI47_13780	0.32	+0.6
2,919,291	+		IAI47_13780	0.32	-1.4
2,919,291	+		IAI47_13780	0.32	-0.1
2,919,291	+		IAI47_13780	0.32	-1.5
2,919,291	+		IAI47_13780	0.32	-0.2
2,919,291	+		IAI47_13780	0.32	+0.0
2,919,291	+		IAI47_13780	0.32	+0.4
2,919,292	-		IAI47_13780	0.32	+0.8
2,919,292	-		IAI47_13780	0.32	-0.9
2,919,292	-		IAI47_13780	0.32	-0.2
2,919,292	-		IAI47_13780	0.32	-0.5
2,919,292	-		IAI47_13780	0.32	-0.1
2,919,292	-		IAI47_13780	0.32	+0.9
2,919,292	-		IAI47_13780	0.32	+0.6
2,919,292	-		IAI47_13780	0.32	+0.5
2,919,292	-		IAI47_13780	0.32	+0.2
2,919,292	-		IAI47_13780	0.32	+1.0
2,919,310	+		IAI47_13780	0.35	-0.3
2,919,310	+		IAI47_13780	0.35	+0.8
2,919,311	-		IAI47_13780	0.35	-1.6
2,919,400	-		IAI47_13780	0.48	-0.4
2,919,400	-		IAI47_13780	0.48	+0.9
2,919,434	+		IAI47_13780	0.54	+0.3
2,919,435	-		IAI47_13780	0.54	-1.0
2,919,435	-		IAI47_13780	0.54	-0.4
2,919,485	-		IAI47_13780	0.62	+0.3
2,919,490	+		IAI47_13780	0.62	+0.9
2,919,491	-		IAI47_13780	0.62	+0.7
2,919,491	-		IAI47_13780	0.62	-0.1
2,919,553	+		IAI47_13780	0.72	-0.6
2,919,554	-		IAI47_13780	0.72	-0.4
2,919,583	+		IAI47_13780	0.77	+1.9
2,919,583	+		IAI47_13780	0.77	-0.8
2,919,583	+		IAI47_13780	0.77	+0.3
2,919,583	+		IAI47_13780	0.77	-0.1
2,919,583	+		IAI47_13780	0.77	+0.9
2,919,583	+		IAI47_13780	0.77	+0.1
2,919,583	+		IAI47_13780	0.77	-0.7
2,919,583	+		IAI47_13780	0.77	+1.6
2,919,583	+		IAI47_13780	0.77	+1.2
2,919,583	+		IAI47_13780	0.77	-0.4
2,919,583	+		IAI47_13780	0.77	-0.2
2,919,583	+		IAI47_13780	0.77	+1.3
2,919,583	+		IAI47_13780	0.77	-0.1
2,919,583	+		IAI47_13780	0.77	-0.7
2,919,583	+		IAI47_13780	0.77	-0.3
2,919,584	-		IAI47_13780	0.77	+2.3
2,919,584	-		IAI47_13780	0.77	+1.2
2,919,584	-		IAI47_13780	0.77	+0.3
2,919,584	-		IAI47_13780	0.77	-1.0
2,919,584	-		IAI47_13780	0.77	-0.6
2,919,584	-		IAI47_13780	0.77	+1.0
2,919,584	-		IAI47_13780	0.77	-0.4
2,919,584	-		IAI47_13780	0.77	-0.7
2,919,584	-		IAI47_13780	0.77	+0.7
2,919,584	-		IAI47_13780	0.77	+0.1
2,919,584	-		IAI47_13780	0.77	+0.6
2,919,584	-		IAI47_13780	0.77	-0.1
2,919,584	-		IAI47_13780	0.77	-0.7
2,919,584	-		IAI47_13780	0.77	+0.7
2,919,584	-		IAI47_13780	0.77	+0.3
2,919,587	+		IAI47_13780	0.77	+0.3
2,919,587	+		IAI47_13780	0.77	+0.9
2,919,588	-		IAI47_13780	0.77	+0.7
2,919,588	-		IAI47_13780	0.77	+0.3
2,919,588	-		IAI47_13780	0.77	+0.7
2,919,588	-		IAI47_13780	0.77	+0.3
2,919,600	-		IAI47_13780	0.79	-0.4
2,919,682	+				+1.5
2,919,759	+				-0.9
2,919,759	+				-1.3
2,919,759	+				+2.1
2,919,775	+				+0.5
2,919,783	-				+1.5
2,919,788	+				+0.0
2,919,788	+				-0.6
2,919,788	+				+1.2
2,919,788	+				+0.5
2,919,788	+				-0.7
2,919,788	+				-0.2
2,919,789	-				-0.4
2,919,789	-				-0.1
2,919,789	-				-0.3
2,919,789	-				-0.7
2,919,789	-				+0.6
2,919,815	-				+0.4
2,919,862	+		IAI47_13785	0.12	-1.3
2,919,862	+		IAI47_13785	0.12	-0.7
2,919,862	+		IAI47_13785	0.12	-0.0
2,919,863	-		IAI47_13785	0.12	+0.8
2,919,863	-		IAI47_13785	0.12	-1.4
2,919,916	+		IAI47_13785	0.17	+0.0
2,919,916	+		IAI47_13785	0.17	-1.1
2,919,916	+		IAI47_13785	0.17	+0.4
2,919,916	+		IAI47_13785	0.17	+0.0
2,919,917	-		IAI47_13785	0.17	+0.3
2,919,917	-		IAI47_13785	0.17	-0.1
2,919,917	-		IAI47_13785	0.17	-0.4
2,919,917	-		IAI47_13785	0.17	-0.1
2,919,917	-		IAI47_13785	0.17	+0.0
2,919,917	-		IAI47_13785	0.17	-1.0
2,919,933	-		IAI47_13785	0.19	-0.4
2,919,988	+		IAI47_13785	0.24	+0.7
2,919,988	+		IAI47_13785	0.24	+0.6
2,919,988	+		IAI47_13785	0.24	-0.3
2,919,989	-		IAI47_13785	0.24	-2.4
2,919,989	-		IAI47_13785	0.24	-0.5
2,919,989	-		IAI47_13785	0.24	-0.3
2,919,992	-		IAI47_13785	0.25	-2.7
2,920,032	-		IAI47_13785	0.29	-0.7
2,920,032	-		IAI47_13785	0.29	+1.3
2,920,053	+		IAI47_13785	0.31	-0.4
2,920,053	+		IAI47_13785	0.31	+0.6
2,920,053	+		IAI47_13785	0.31	+0.5
2,920,054	-		IAI47_13785	0.31	-0.3
2,920,054	-		IAI47_13785	0.31	-1.0
2,920,054	-		IAI47_13785	0.31	-0.6