Strain Fitness in Pantoea sp. MT58 around IAI47_13320

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,816,354	+		IAI47_13310	0.86	-1.3
2,816,354	+		IAI47_13310	0.86	+1.3
2,816,354	+		IAI47_13310	0.86	+0.9
2,816,355	-		IAI47_13310	0.86	-1.5
2,816,362	+		IAI47_13310	0.87	-0.3
2,816,362	+		IAI47_13310	0.87	-1.2
2,816,367	-		IAI47_13310	0.88	+0.3
2,816,427	+				-2.5
2,816,440	+				+0.1
2,816,504	+				+1.3
2,816,505	-				+0.6
2,816,505	-				+0.9
2,816,505	-				+1.6
2,816,507	+				+0.6
2,816,508	-				+1.3
2,816,508	-				-0.3
2,816,524	+				+0.3
2,816,524	+				+0.9
2,816,525	-				-0.2
2,816,583	+				-1.0
2,816,584	-				+1.0
2,816,586	+				-0.7
2,816,587	-				-0.1
2,816,626	+				-2.0
2,816,626	+				-2.0
2,816,627	-				-0.1
2,816,711	+		IAI47_13315	0.11	+0.8
2,816,712	-		IAI47_13315	0.11	+0.9
2,816,730	+		IAI47_13315	0.13	+0.6
2,816,730	+		IAI47_13315	0.13	-0.5
2,816,731	-		IAI47_13315	0.13	+1.9
2,816,731	-		IAI47_13315	0.13	-0.0
2,816,738	-		IAI47_13315	0.14	-0.3
2,816,741	-		IAI47_13315	0.15	+0.4
2,816,751	-		IAI47_13315	0.16	+0.3
2,816,758	+		IAI47_13315	0.17	+0.9
2,816,841	-		IAI47_13315	0.28	+0.3
2,816,912	+		IAI47_13315	0.38	-0.3
2,816,913	-		IAI47_13315	0.38	+0.7
2,816,913	-		IAI47_13315	0.38	-0.4
2,816,913	-		IAI47_13315	0.38	-2.0
2,816,946	-		IAI47_13315	0.43	+2.9
2,816,950	+		IAI47_13315	0.43	-0.3
2,816,950	+		IAI47_13315	0.43	-1.9
2,816,951	-		IAI47_13315	0.43	+0.3
2,816,988	-		IAI47_13315	0.48	-0.4
2,816,988	-		IAI47_13315	0.48	+1.9
2,816,994	+		IAI47_13315	0.49	+0.1
2,817,077	-		IAI47_13315	0.61	+0.9
2,817,097	+		IAI47_13315	0.63	+0.5
2,817,097	+		IAI47_13315	0.63	+0.3
2,817,097	+		IAI47_13315	0.63	+0.6
2,817,098	-		IAI47_13315	0.64	-0.3
2,817,098	-		IAI47_13315	0.64	-1.7
2,817,098	-		IAI47_13315	0.64	+0.0
2,817,098	-		IAI47_13315	0.64	-0.0
2,817,098	-		IAI47_13315	0.64	-0.4
2,817,104	+		IAI47_13315	0.64	-0.9
2,817,104	+		IAI47_13315	0.64	-0.7
2,817,243	+		IAI47_13315	0.83	-0.1
2,817,243	+		IAI47_13315	0.83	-0.3
2,817,243	+		IAI47_13315	0.83	-0.7
2,817,244	-		IAI47_13315	0.83	-0.0
2,817,244	-		IAI47_13315	0.83	-0.6
2,817,244	-		IAI47_13315	0.83	+1.3
2,817,302	+				+0.9
2,817,321	+				+1.4
2,817,321	+				+0.4
2,817,322	-				+0.3
2,817,322	-				+1.2
2,817,322	-				-1.5
2,817,330	-				+0.3
2,817,367	+				+0.0
2,817,367	+				-0.1
2,817,367	+				+1.2
2,817,368	-				-0.5
2,817,465	+		IAI47_13320	0.12	-1.7
2,817,466	-		IAI47_13320	0.12	-1.3
2,817,466	-		IAI47_13320	0.12	-0.7
2,817,546	+		IAI47_13320	0.20	-1.3
2,817,574	+		IAI47_13320	0.23	-0.9
2,817,575	-		IAI47_13320	0.24	+0.3
2,817,680	-		IAI47_13320	0.35	+0.1
2,817,762	+		IAI47_13320	0.43	-0.1
2,817,762	+		IAI47_13320	0.43	-0.7
2,817,763	-		IAI47_13320	0.43	-2.2
2,817,763	-		IAI47_13320	0.43	+0.3
2,817,763	-		IAI47_13320	0.43	-0.6
2,817,763	-		IAI47_13320	0.43	-0.6
2,818,015	-		IAI47_13320	0.70	-1.0
2,818,048	+		IAI47_13320	0.73	+0.2
2,818,065	-		IAI47_13320	0.75	+0.3
2,818,142	+		IAI47_13320	0.83	+1.4
2,818,143	-		IAI47_13320	0.83	-0.7
2,818,143	-		IAI47_13320	0.83	-2.2
2,818,143	-		IAI47_13320	0.83	+0.3
2,818,207	+				+1.9
2,818,207	+				-0.0
2,818,207	+				+0.1
2,818,385	+				+0.4
2,818,386	-				+0.6
2,818,386	-				-0.5
2,818,386	-				+1.9
2,818,532	+		IAI47_13325	0.20	-0.9
2,818,532	+		IAI47_13325	0.20	+0.5
2,818,533	-		IAI47_13325	0.20	+1.3
2,818,533	-		IAI47_13325	0.20	-0.6
2,818,533	-		IAI47_13325	0.20	+1.3
2,818,533	-		IAI47_13325	0.20	-0.9
2,818,653	+		IAI47_13325	0.31	+0.3
2,818,653	+		IAI47_13325	0.31	-0.4
2,818,654	-		IAI47_13325	0.31	-1.3
2,818,654	-		IAI47_13325	0.31	+0.3
2,818,697	-		IAI47_13325	0.34	+0.3
2,818,792	+		IAI47_13325	0.43	-0.5
2,818,792	+		IAI47_13325	0.43	-1.4
2,818,798	+		IAI47_13325	0.43	-0.7
2,818,798	+		IAI47_13325	0.43	-1.9
2,818,798	+		IAI47_13325	0.43	+1.6
2,818,798	+		IAI47_13325	0.43	-2.3
2,818,798	+		IAI47_13325	0.43	+0.0
2,818,798	+		IAI47_13325	0.43	-0.0
2,818,871	+		IAI47_13325	0.49	+0.1
2,818,872	-		IAI47_13325	0.49	+1.1
2,818,872	-		IAI47_13325	0.49	+1.1
2,818,872	-		IAI47_13325	0.49	+0.3
2,818,872	-		IAI47_13325	0.49	-0.8
2,818,883	+		IAI47_13325	0.50	-1.8
2,818,889	-		IAI47_13325	0.51	+0.5
2,818,950	+		IAI47_13325	0.56	-1.6
2,818,950	+		IAI47_13325	0.56	+2.1
2,818,951	-		IAI47_13325	0.56	+1.9
2,818,951	-		IAI47_13325	0.56	-0.3
2,819,077	+		IAI47_13325	0.67	-2.3
2,819,078	-		IAI47_13325	0.67	-0.2
2,819,078	-		IAI47_13325	0.67	-0.7
2,819,111	+		IAI47_13325	0.70	-1.7
2,819,111	+		IAI47_13325	0.70	-1.5
2,819,111	+		IAI47_13325	0.70	+0.3
2,819,112	-		IAI47_13325	0.70	-0.1
2,819,112	-		IAI47_13325	0.70	-0.1
2,819,112	-		IAI47_13325	0.70	+0.2
2,819,162	+		IAI47_13325	0.74	+0.0
2,819,162	+		IAI47_13325	0.74	+0.0
2,819,163	-		IAI47_13325	0.74	-0.1
2,819,163	-		IAI47_13325	0.74	+0.7
2,819,163	-		IAI47_13325	0.74	-1.6
2,819,163	-		IAI47_13325	0.74	-1.1
2,819,232	-		IAI47_13325	0.80	+0.2
2,819,232	-		IAI47_13325	0.80	-0.8
2,819,232	-		IAI47_13325	0.80	+0.8
2,819,239	+		IAI47_13325	0.81	+0.6
2,819,239	+		IAI47_13325	0.81	-0.1
2,819,239	+		IAI47_13325	0.81	-0.0
2,819,239	+		IAI47_13325	0.81	+0.4
2,819,239	+		IAI47_13325	0.81	-0.4
2,819,239	+		IAI47_13325	0.81	+0.6
2,819,240	-		IAI47_13325	0.81	-0.1
2,819,240	-		IAI47_13325	0.81	+1.3
2,819,240	-		IAI47_13325	0.81	+0.5
2,819,240	-		IAI47_13325	0.81	-1.1
2,819,240	-		IAI47_13325	0.81	+0.9
2,819,240	-		IAI47_13325	0.81	+1.7
2,819,240	-		IAI47_13325	0.81	-0.9
2,819,240	-		IAI47_13325	0.81	+0.6
2,819,242	+		IAI47_13325	0.81	-0.1
2,819,242	+		IAI47_13325	0.81	-0.9
2,819,243	-		IAI47_13325	0.81	+1.3
2,819,294	+		IAI47_13325	0.85	+0.6
2,819,294	+		IAI47_13325	0.85	-0.2
2,819,295	-		IAI47_13325	0.85	+1.5
2,819,295	-		IAI47_13325	0.85	-0.3
2,819,295	-		IAI47_13325	0.85	+0.3