Strain Fitness in Pantoea sp. MT58 around IAI47_13180

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,787,634	+		IAI47_13175	0.21	+1.9
2,787,634	+		IAI47_13175	0.21	-0.3
2,787,634	+		IAI47_13175	0.21	+0.3
2,787,635	-		IAI47_13175	0.21	-0.0
2,787,635	-		IAI47_13175	0.21	+0.3
2,787,635	-		IAI47_13175	0.21	-0.7
2,787,665	+		IAI47_13175	0.24	+0.3
2,787,665	+		IAI47_13175	0.24	+0.9
2,787,665	+		IAI47_13175	0.24	-0.3
2,787,665	+		IAI47_13175	0.24	+2.4
2,787,665	+		IAI47_13175	0.24	-0.1
2,787,747	+		IAI47_13175	0.31	+0.9
2,787,747	+		IAI47_13175	0.31	-1.3
2,787,747	+		IAI47_13175	0.31	-1.0
2,787,748	-		IAI47_13175	0.31	+0.7
2,787,748	-		IAI47_13175	0.31	-0.3
2,787,748	-		IAI47_13175	0.31	-0.2
2,787,760	-		IAI47_13175	0.32	+0.7
2,787,786	+		IAI47_13175	0.35	-0.7
2,787,787	-		IAI47_13175	0.35	+1.0
2,787,787	-		IAI47_13175	0.35	+0.3
2,787,787	-		IAI47_13175	0.35	+1.0
2,787,811	+		IAI47_13175	0.37	+0.6
2,787,811	+		IAI47_13175	0.37	-0.3
2,787,812	-		IAI47_13175	0.37	-0.3
2,787,812	-		IAI47_13175	0.37	-1.6
2,787,812	-		IAI47_13175	0.37	-0.8
2,787,817	-		IAI47_13175	0.37	+0.9
2,787,817	-		IAI47_13175	0.37	+0.3
2,787,841	+		IAI47_13175	0.39	+0.5
2,787,842	-		IAI47_13175	0.40	-0.9
2,787,887	+		IAI47_13175	0.44	+0.7
2,787,887	+		IAI47_13175	0.44	-0.4
2,787,887	+		IAI47_13175	0.44	+1.0
2,787,887	+		IAI47_13175	0.44	-0.5
2,787,888	-		IAI47_13175	0.44	+0.1
2,787,888	-		IAI47_13175	0.44	-1.1
2,787,888	-		IAI47_13175	0.44	-0.3
2,787,888	-		IAI47_13175	0.44	-0.5
2,787,888	-		IAI47_13175	0.44	+1.9
2,787,888	-		IAI47_13175	0.44	+0.1
2,787,889	+		IAI47_13175	0.44	+0.3
2,787,889	+		IAI47_13175	0.44	+0.5
2,787,890	-		IAI47_13175	0.44	+0.3
2,787,890	-		IAI47_13175	0.44	+0.0
2,787,890	-		IAI47_13175	0.44	+0.3
2,787,906	+		IAI47_13175	0.45	+1.9
2,787,951	+		IAI47_13175	0.49	-0.8
2,787,976	-		IAI47_13175	0.52	+0.7
2,787,976	-		IAI47_13175	0.52	+0.7
2,787,976	-		IAI47_13175	0.52	+1.5
2,788,048	-		IAI47_13175	0.58	+0.7
2,788,158	+		IAI47_13175	0.68	+1.9
2,788,159	-		IAI47_13175	0.68	+1.5
2,788,162	+		IAI47_13175	0.68	-0.9
2,788,162	+		IAI47_13175	0.68	+0.0
2,788,162	+		IAI47_13175	0.68	-0.1
2,788,162	+		IAI47_13175	0.68	+0.3
2,788,163	-		IAI47_13175	0.68	+0.3
2,788,163	-		IAI47_13175	0.68	+1.5
2,788,163	-		IAI47_13175	0.68	+1.3
2,788,163	-		IAI47_13175	0.68	-0.3
2,788,163	-		IAI47_13175	0.68	-1.3
2,788,163	-		IAI47_13175	0.68	+1.1
2,788,163	-		IAI47_13175	0.68	+1.0
2,788,163	-		IAI47_13175	0.68	-2.0
2,788,163	-		IAI47_13175	0.68	-0.1
2,788,186	+		IAI47_13175	0.71	+1.3
2,788,186	+		IAI47_13175	0.71	-0.7
2,788,186	+		IAI47_13175	0.71	-1.8
2,788,187	-		IAI47_13175	0.71	+0.0
2,788,206	+		IAI47_13175	0.72	+0.3
2,788,206	+		IAI47_13175	0.72	-0.3
2,788,207	-		IAI47_13175	0.72	-1.6
2,788,207	-		IAI47_13175	0.72	-3.4
2,788,228	+		IAI47_13175	0.74	+1.4
2,788,228	+		IAI47_13175	0.74	-0.5
2,788,229	-		IAI47_13175	0.74	-1.0
2,788,229	-		IAI47_13175	0.74	-0.3
2,788,258	+		IAI47_13175	0.77	+1.1
2,788,263	+		IAI47_13175	0.77	+1.9
2,788,263	+		IAI47_13175	0.77	-1.6
2,788,263	+		IAI47_13175	0.77	+0.3
2,788,263	+		IAI47_13175	0.77	+0.4
2,788,263	+		IAI47_13175	0.77	-1.3
2,788,263	+		IAI47_13175	0.77	-0.6
2,788,263	+		IAI47_13175	0.77	-0.7
2,788,263	+		IAI47_13175	0.77	-0.3
2,788,263	+		IAI47_13175	0.77	-0.0
2,788,263	+		IAI47_13175	0.77	-0.7
2,788,264	-		IAI47_13175	0.78	-1.0
2,788,264	-		IAI47_13175	0.78	+2.6
2,788,264	-		IAI47_13175	0.78	+0.3
2,788,264	-		IAI47_13175	0.78	+1.9
2,788,264	-		IAI47_13175	0.78	-0.3
2,788,264	-		IAI47_13175	0.78	+0.4
2,788,264	-		IAI47_13175	0.78	-0.3
2,788,264	-		IAI47_13175	0.78	-0.0
2,788,264	-		IAI47_13175	0.78	+0.8
2,788,264	-		IAI47_13175	0.78	-0.7
2,788,264	-		IAI47_13175	0.78	-0.3
2,788,264	-		IAI47_13175	0.78	-0.6
2,788,264	-		IAI47_13175	0.78	+0.3
2,788,264	-		IAI47_13175	0.78	+0.3
2,788,264	-		IAI47_13175	0.78	+0.7
2,788,264	-		IAI47_13175	0.78	+0.5
2,788,264	-		IAI47_13175	0.78	-0.1
2,788,329	-		IAI47_13175	0.83	+0.8
2,788,380	+		IAI47_13175	0.88	-0.2
2,788,381	-		IAI47_13175	0.88	-0.0
2,788,387	-		IAI47_13175	0.89	-1.0
2,788,387	-		IAI47_13175	0.89	-0.8
2,788,396	+		IAI47_13175	0.89	+3.9
2,788,447	+				+1.5
2,788,447	+				-0.9
2,788,447	+				+0.3
2,788,448	-				+0.4
2,788,448	-				+0.9
2,788,448	-				-0.6
2,788,448	-				+0.3
2,788,448	-				+1.5
2,788,448	-				+0.6
2,788,462	+				-0.1
2,788,462	+				-0.9
2,788,463	-				-1.7
2,788,466	-				+0.5
2,788,466	-				+0.9
2,788,466	-				+0.3
2,788,466	-				-0.5
2,788,521	+				+1.6
2,788,528	+				-1.3
2,788,529	-				+0.4
2,788,557	-				-1.3
2,788,557	-				-2.0
2,788,557	-				-0.7
2,788,557	-				-0.7
2,788,557	-				-2.3
2,788,560	+				-2.0
2,788,560	+				-3.0
2,788,560	+				-1.5
2,788,560	+				-3.9
2,788,560	+				-3.5
2,788,561	-				-0.7
2,788,561	-				-1.3
2,788,561	-				-3.0
2,788,561	-				-1.7
2,788,595	+		IAI47_13180	0.14	-2.5
2,788,595	+		IAI47_13180	0.14	-3.4
2,788,595	+		IAI47_13180	0.14	-1.7
2,788,595	+		IAI47_13180	0.14	-1.7
2,788,596	-		IAI47_13180	0.14	-2.0
2,788,596	-		IAI47_13180	0.14	-3.4
2,788,596	-		IAI47_13180	0.14	-3.6
2,788,661	+		IAI47_13180	0.28	-2.7
2,788,661	+		IAI47_13180	0.28	-5.7
2,788,661	+		IAI47_13180	0.28	-2.5
2,788,661	+		IAI47_13180	0.28	-2.3
2,788,662	-		IAI47_13180	0.28	-2.7
2,788,662	-		IAI47_13180	0.28	-2.3
2,788,662	-		IAI47_13180	0.28	-4.1
2,788,776	-		IAI47_13180	0.53	-3.5
2,788,776	-		IAI47_13180	0.53	-3.8
2,788,870	+		IAI47_13180	0.73	-2.7
2,788,871	-		IAI47_13180	0.74	-2.0
2,788,871	-		IAI47_13180	0.74	-2.5
2,788,881	+		IAI47_13180	0.76	-3.2
2,788,882	-		IAI47_13180	0.76	-3.0
2,788,937	+		IAI47_13180	0.88	-3.2
2,788,937	+		IAI47_13180	0.88	-2.3
2,788,937	+		IAI47_13180	0.88	-2.3
2,788,937	+		IAI47_13180	0.88	-3.7
2,788,938	-		IAI47_13180	0.88	-3.4
2,788,938	-		IAI47_13180	0.88	-2.3
2,788,938	-		IAI47_13180	0.88	-2.3
2,788,938	-		IAI47_13180	0.88	-2.0
2,788,938	-		IAI47_13180	0.88	-3.0
2,788,976	+				-0.7
2,788,977	-				-4.5
2,789,005	+				-2.0
2,789,005	+				-1.3
2,789,005	+				-3.0
2,789,006	-				-2.3
2,789,008	+				-3.7
2,789,008	+				-2.7
2,789,009	-				-0.4
2,789,009	-				+0.3
2,789,039	+				-2.3
2,789,039	+				-2.7
2,789,039	+				-2.0
2,789,054	+				-0.7
2,789,054	+				-1.0
2,789,054	+				-2.7
2,789,055	-				-1.3
2,789,055	-				+0.4
2,789,091	-				+0.3
2,789,107	+				-0.7
2,789,109	+				-0.7
2,789,110	-				-1.3
2,789,110	-				+0.2
2,789,110	-				+1.9
2,789,119	+				+0.3
2,789,119	+				-0.3
2,789,119	+				+0.4
2,789,120	-				+0.6
2,789,131	+				-0.3
2,789,136	+				-0.3
2,789,136	+				-0.2
2,789,136	+				-0.5
2,789,237	+				+0.3
2,789,237	+				+0.9
2,789,238	-				-0.9
2,789,243	+				-0.5
2,789,243	+				-0.6
2,789,243	+				-0.0
2,789,244	-				-0.7
2,789,266	+				+0.3
2,789,266	+				+0.0
2,789,390	+				+1.3
2,789,391	-				-0.4
2,789,420	+				-0.0
2,789,420	+				-0.4
2,789,420	+				-0.0
2,789,421	-				-0.1
2,789,421	-				+1.3
2,789,433	+				+0.6
2,789,512	+				+0.3
2,789,513	-				+0.1
2,789,513	-				-0.6
2,789,513	-				+0.3
2,789,590	+				-0.0
2,789,590	+				+0.1
2,789,590	+				+0.3
2,789,590	+				+0.7
2,789,590	+				+0.1
2,789,591	-				+0.3
2,789,591	-				-0.2
2,789,591	-				-0.7
2,789,662	+				+0.6
2,789,663	-				+0.3
2,789,663	-				-0.5
2,789,668	-				-0.9
2,789,668	-				-0.5
2,789,668	-				-1.7
2,789,674	-				-0.7
2,789,687	+				-0.1
2,789,688	-				-1.2
2,789,688	-				-0.7
2,789,720	-				-0.1
2,789,739	+		IAI47_13185	0.13	-0.7
2,789,740	-		IAI47_13185	0.13	-0.5
2,789,774	-		IAI47_13185	0.20	-0.7
2,789,853	+		IAI47_13185	0.35	-1.1
2,789,854	-		IAI47_13185	0.35	-1.5
2,789,854	-		IAI47_13185	0.35	-0.1
2,789,854	-		IAI47_13185	0.35	-0.8
2,789,854	-		IAI47_13185	0.35	-1.8
2,789,854	-		IAI47_13185	0.35	-2.0
2,789,854	-		IAI47_13185	0.35	-0.5
2,789,857	+		IAI47_13185	0.36	-0.6
2,789,857	+		IAI47_13185	0.36	-0.1
2,789,857	+		IAI47_13185	0.36	+1.3
2,789,857	+		IAI47_13185	0.36	-1.0
2,789,857	+		IAI47_13185	0.36	-0.2
2,789,857	+		IAI47_13185	0.36	+0.3
2,789,858	-		IAI47_13185	0.36	-0.9
2,789,858	-		IAI47_13185	0.36	+1.3
2,789,858	-		IAI47_13185	0.36	-2.0
2,789,858	-		IAI47_13185	0.36	-2.5
2,789,858	-		IAI47_13185	0.36	-0.9
2,789,858	-		IAI47_13185	0.36	-0.7
2,789,863	-		IAI47_13185	0.37	-0.5
2,789,883	+		IAI47_13185	0.41	-0.8
2,789,883	+		IAI47_13185	0.41	-0.6
2,789,883	+		IAI47_13185	0.41	-0.4
2,789,883	+		IAI47_13185	0.41	-0.1
2,789,883	+		IAI47_13185	0.41	+0.3
2,789,883	+		IAI47_13185	0.41	+0.3
2,789,884	-		IAI47_13185	0.41	-0.7
2,789,884	-		IAI47_13185	0.41	+0.8
2,789,884	-		IAI47_13185	0.41	-2.9
2,789,884	-		IAI47_13185	0.41	+0.3
2,789,884	-		IAI47_13185	0.41	-0.7
2,789,884	-		IAI47_13185	0.41	-1.0
2,789,884	-		IAI47_13185	0.41	-1.6
2,789,884	-		IAI47_13185	0.41	-0.5
2,789,884	-		IAI47_13185	0.41	-1.3
2,789,884	-		IAI47_13185	0.41	-1.0
2,789,884	-		IAI47_13185	0.41	-1.3
2,789,884	-		IAI47_13185	0.41	+0.3
2,789,884	-		IAI47_13185	0.41	-0.3
2,789,884	-		IAI47_13185	0.41	-0.3
2,789,884	-		IAI47_13185	0.41	+0.3
2,789,884	-		IAI47_13185	0.41	-0.3
2,789,890	+		IAI47_13185	0.42	+0.0
2,789,891	-		IAI47_13185	0.43	+0.5
2,789,934	+		IAI47_13185	0.51	-1.0
2,789,935	-		IAI47_13185	0.51	+0.1
2,789,935	-		IAI47_13185	0.51	-2.6
2,789,935	-		IAI47_13185	0.51	-1.5
2,789,935	-		IAI47_13185	0.51	-0.6
2,789,935	-		IAI47_13185	0.51	-1.9
2,789,935	-		IAI47_13185	0.51	-2.4
2,789,935	-		IAI47_13185	0.51	-0.7
2,789,938	-		IAI47_13185	0.52	-1.4
2,789,953	-		IAI47_13185	0.55	-0.3
2,789,968	+		IAI47_13185	0.58	+0.1
2,789,968	+		IAI47_13185	0.58	-0.6
2,789,969	-		IAI47_13185	0.58	-0.7
2,789,985	+		IAI47_13185	0.61	+0.3
2,789,985	+		IAI47_13185	0.61	-0.7
2,789,985	+		IAI47_13185	0.61	-1.9
2,789,985	+		IAI47_13185	0.61	-0.3
2,789,986	-		IAI47_13185	0.61	+0.1
2,789,986	-		IAI47_13185	0.61	-1.2
2,789,986	-		IAI47_13185	0.61	-0.4
2,789,986	-		IAI47_13185	0.61	-1.0
2,789,986	-		IAI47_13185	0.61	-1.1
2,789,986	-		IAI47_13185	0.61	+0.3
2,789,986	-		IAI47_13185	0.61	-1.0