Strain Fitness in Pantoea sp. MT58 around IAI47_12750

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,683,776	+		IAI47_12745	0.71	-0.8
2,683,776	+		IAI47_12745	0.71	-0.6
2,683,776	+		IAI47_12745	0.71	-0.5
2,683,776	+		IAI47_12745	0.71	+1.5
2,683,777	-		IAI47_12745	0.71	-0.6
2,683,777	-		IAI47_12745	0.71	-0.5
2,683,793	+		IAI47_12745	0.72	+0.4
2,683,793	+		IAI47_12745	0.72	-0.2
2,683,793	+		IAI47_12745	0.72	-0.0
2,683,793	+		IAI47_12745	0.72	+0.6
2,683,793	+		IAI47_12745	0.72	-0.8
2,683,793	+		IAI47_12745	0.72	-1.0
2,683,794	-		IAI47_12745	0.72	+1.4
2,683,794	-		IAI47_12745	0.72	+1.5
2,683,794	-		IAI47_12745	0.72	+0.6
2,683,872	+		IAI47_12745	0.75	+1.2
2,683,872	+		IAI47_12745	0.75	+2.2
2,683,923	+		IAI47_12745	0.77	+0.2
2,683,924	-		IAI47_12745	0.77	+0.2
2,683,924	-		IAI47_12745	0.77	+1.2
2,683,973	+		IAI47_12745	0.79	-0.0
2,683,973	+		IAI47_12745	0.79	-1.2
2,683,973	+		IAI47_12745	0.79	-0.3
2,684,090	+		IAI47_12745	0.83	-0.5
2,684,090	+		IAI47_12745	0.83	+2.1
2,684,090	+		IAI47_12745	0.83	+0.8
2,684,090	+		IAI47_12745	0.83	-1.4
2,684,090	+		IAI47_12745	0.83	+0.0
2,684,091	-		IAI47_12745	0.83	+1.6
2,684,091	-		IAI47_12745	0.83	+0.9
2,684,091	-		IAI47_12745	0.83	-2.1
2,684,091	-		IAI47_12745	0.83	+0.2
2,684,104	-		IAI47_12745	0.84	+0.4
2,684,135	+		IAI47_12745	0.85	+0.2
2,684,135	+		IAI47_12745	0.85	+0.8
2,684,136	-		IAI47_12745	0.85	-0.5
2,684,136	-		IAI47_12745	0.85	+1.5
2,684,136	-		IAI47_12745	0.85	+1.7
2,684,142	+		IAI47_12745	0.85	+1.2
2,684,142	+		IAI47_12745	0.85	-0.6
2,684,142	+		IAI47_12745	0.85	+0.4
2,684,142	+		IAI47_12745	0.85	+0.6
2,684,142	+		IAI47_12745	0.85	-1.3
2,684,142	+		IAI47_12745	0.85	-0.2
2,684,142	+		IAI47_12745	0.85	-2.1
2,684,143	-		IAI47_12745	0.85	+0.1
2,684,143	-		IAI47_12745	0.85	-0.3
2,684,143	-		IAI47_12745	0.85	+1.6
2,684,143	-		IAI47_12745	0.85	-0.5
2,684,143	-		IAI47_12745	0.85	+0.1
2,684,143	-		IAI47_12745	0.85	+1.2
2,684,143	-		IAI47_12745	0.85	-1.1
2,684,143	-		IAI47_12745	0.85	+1.0
2,684,143	-		IAI47_12745	0.85	-0.0
2,684,145	+		IAI47_12745	0.85	+4.3
2,684,146	-		IAI47_12745	0.85	-1.3
2,684,146	-		IAI47_12745	0.85	-0.1
2,684,199	-		IAI47_12745	0.87	+0.2
2,684,199	-		IAI47_12745	0.87	-1.5
2,684,235	+		IAI47_12745	0.89	+0.0
2,684,235	+		IAI47_12745	0.89	+0.6
2,684,235	+		IAI47_12745	0.89	+0.8
2,684,236	-		IAI47_12745	0.89	+2.1
2,684,236	-		IAI47_12745	0.89	+0.8
2,684,236	-		IAI47_12745	0.89	+0.2
2,684,236	-		IAI47_12745	0.89	-0.9
2,684,350	+				+0.7
2,684,401	-				-0.3
2,684,418	+				-0.1
2,684,453	-				-1.3
2,684,453	-				-0.6
2,684,474	+				+1.2
2,684,474	+				-0.7
2,684,474	+				+0.7
2,684,474	+				-1.3
2,684,474	+				+0.6
2,684,475	-				-0.6
2,684,475	-				-0.3
2,684,475	-				-1.1
2,684,489	+				+1.3
2,684,501	+				-0.4
2,684,501	+				+0.3
2,684,501	+				+2.4
2,684,502	-				+0.7
2,684,502	-				-0.7
2,684,526	+				+1.3
2,684,527	-				+0.9
2,684,527	-				-0.1
2,684,527	-				-1.0
2,684,527	-				+0.8
2,684,527	-				+0.5
2,684,527	-				+0.9
2,684,527	-				-2.3
2,684,544	+				+2.0
2,684,544	+				+0.3
2,684,544	+				+0.3
2,684,545	-				+0.0
2,684,546	+				+2.3
2,684,547	-				+0.6
2,684,547	-				-0.5
2,684,547	-				-0.3
2,684,547	-				+0.7
2,684,552	+				+0.4
2,684,565	+				-0.7
2,684,566	-				+0.3
2,684,566	-				-0.7
2,684,574	+				+0.1
2,684,575	-				-0.1
2,684,575	-				-0.7
2,684,577	+				-1.2
2,684,577	+				-0.6
2,684,577	+				+0.4
2,684,577	+				-1.3
2,684,577	+				+0.6
2,684,577	+				+1.8
2,684,604	-				-0.2
2,684,604	-				+0.1
2,684,620	-				-0.0
2,684,630	-				-1.7
2,684,669	+				-0.4
2,684,670	-				-1.3
2,684,670	-				-0.3
2,684,670	-				-0.1
2,684,670	-				-0.3
2,684,670	-				+1.8
2,684,670	-				+0.8
2,684,670	-				+0.8
2,684,691	-				-0.2
2,684,698	+				-0.6
2,684,698	+				+0.1
2,684,698	+				+0.3
2,684,698	+				-0.2
2,684,699	-				-0.3
2,684,701	-				-0.6
2,684,714	+				-0.7
2,684,715	-				+0.3
2,684,715	-				+0.3
2,684,724	+				+1.3
2,684,724	+				-0.1
2,684,724	+				-0.3
2,684,724	+				+1.3
2,684,724	+				-1.7
2,684,725	-				+0.3
2,684,811	+				-0.9
2,684,821	+				-0.7
2,684,821	+				+0.3
2,684,821	+				-0.3
2,684,821	+				+0.9
2,684,821	+				+1.1
2,684,821	+				-0.1
2,684,821	+				+0.5
2,684,822	-				+0.4
2,684,822	-				-0.5
2,684,822	-				+0.7
2,684,822	-				+0.3
2,684,823	+				+1.4
2,684,823	+				+0.4
2,684,823	+				+0.6
2,684,824	-				+0.4
2,684,824	-				+0.6
2,684,824	-				+0.3
2,684,824	-				+0.7
2,684,832	+				-1.1
2,684,833	-				+0.8
2,684,833	-				+0.4
2,684,833	-				-0.7
2,684,857	+				+0.3
2,684,858	-				-0.2
2,684,867	+				+1.5
2,684,867	+				+2.4
2,684,868	-				+2.3
2,684,917	+		IAI47_12750	0.12	+0.3
2,684,949	+		IAI47_12750	0.15	-0.7
2,684,950	-		IAI47_12750	0.15	+0.7
2,685,019	+		IAI47_12750	0.21	+2.1
2,685,019	+		IAI47_12750	0.21	+0.1
2,685,048	+		IAI47_12750	0.23	-0.3
2,685,126	+		IAI47_12750	0.30	+0.3
2,685,126	+		IAI47_12750	0.30	-0.8
2,685,126	+		IAI47_12750	0.30	+0.7
2,685,126	+		IAI47_12750	0.30	-1.1
2,685,127	-		IAI47_12750	0.30	-1.1
2,685,127	-		IAI47_12750	0.30	+0.2
2,685,127	-		IAI47_12750	0.30	+1.1
2,685,127	-		IAI47_12750	0.30	-0.2
2,685,127	-		IAI47_12750	0.30	+1.0
2,685,218	+		IAI47_12750	0.37	+0.3
2,685,218	+		IAI47_12750	0.37	+2.4
2,685,218	+		IAI47_12750	0.37	-0.1
2,685,219	-		IAI47_12750	0.37	+0.8
2,685,241	-		IAI47_12750	0.39	+1.5
2,685,252	-		IAI47_12750	0.40	-2.1
2,685,252	-		IAI47_12750	0.40	+0.7
2,685,252	-		IAI47_12750	0.40	+0.6
2,685,252	-		IAI47_12750	0.40	+0.3
2,685,264	+		IAI47_12750	0.41	+0.3
2,685,264	+		IAI47_12750	0.41	-0.3
2,685,264	+		IAI47_12750	0.41	-0.0
2,685,264	+		IAI47_12750	0.41	+0.3
2,685,265	-		IAI47_12750	0.41	+0.0
2,685,265	-		IAI47_12750	0.41	+0.7
2,685,265	-		IAI47_12750	0.41	-1.2
2,685,265	-		IAI47_12750	0.41	-0.2
2,685,265	-		IAI47_12750	0.41	-0.5
2,685,265	-		IAI47_12750	0.41	-0.0
2,685,265	-		IAI47_12750	0.41	+0.3
2,685,265	-		IAI47_12750	0.41	-0.1
2,685,308	-		IAI47_12750	0.45	-0.2
2,685,378	+		IAI47_12750	0.50	-0.7
2,685,378	+		IAI47_12750	0.50	+0.6
2,685,378	+		IAI47_12750	0.50	+0.3
2,685,378	+		IAI47_12750	0.50	-0.3
2,685,378	+		IAI47_12750	0.50	-0.6
2,685,379	-		IAI47_12750	0.50	-0.9
2,685,379	-		IAI47_12750	0.50	+0.3
2,685,382	+		IAI47_12750	0.51	+1.8
2,685,382	+		IAI47_12750	0.51	-0.2
2,685,382	+		IAI47_12750	0.51	+0.3
2,685,382	+		IAI47_12750	0.51	-2.6
2,685,382	+		IAI47_12750	0.51	+1.3
2,685,382	+		IAI47_12750	0.51	+1.7
2,685,382	+		IAI47_12750	0.51	-0.1
2,685,382	+		IAI47_12750	0.51	+1.3
2,685,382	+		IAI47_12750	0.51	-0.3
2,685,383	-		IAI47_12750	0.51	-0.3
2,685,383	-		IAI47_12750	0.51	+1.0
2,685,383	-		IAI47_12750	0.51	+1.0
2,685,383	-		IAI47_12750	0.51	+1.3
2,685,383	-		IAI47_12750	0.51	-1.4
2,685,383	-		IAI47_12750	0.51	+0.8
2,685,474	+		IAI47_12750	0.58	+0.8
2,685,475	-		IAI47_12750	0.58	+0.4
2,685,475	-		IAI47_12750	0.58	+0.3
2,685,475	-		IAI47_12750	0.58	+1.8
2,685,475	-		IAI47_12750	0.58	+0.3
2,685,477	+		IAI47_12750	0.59	+0.1
2,685,478	-		IAI47_12750	0.59	-0.7
2,685,478	-		IAI47_12750	0.59	+0.2
2,685,515	-		IAI47_12750	0.62	-2.3
2,685,515	-		IAI47_12750	0.62	+0.8
2,685,515	-		IAI47_12750	0.62	-1.0
2,685,515	-		IAI47_12750	0.62	+1.3
2,685,515	-		IAI47_12750	0.62	+1.5
2,685,515	-		IAI47_12750	0.62	+0.8
2,685,549	+		IAI47_12750	0.65	+0.0
2,685,549	+		IAI47_12750	0.65	-1.2
2,685,550	-		IAI47_12750	0.65	+0.8
2,685,550	-		IAI47_12750	0.65	-1.3
2,685,550	-		IAI47_12750	0.65	-0.4
2,685,550	-		IAI47_12750	0.65	-0.5
2,685,550	-		IAI47_12750	0.65	-1.2
2,685,664	+		IAI47_12750	0.74	-1.9
2,685,664	+		IAI47_12750	0.74	+0.5
2,685,665	-		IAI47_12750	0.74	+0.3
2,685,665	-		IAI47_12750	0.74	+2.0
2,685,678	+		IAI47_12750	0.75	+3.1
2,685,719	+		IAI47_12750	0.79	+0.8
2,685,719	+		IAI47_12750	0.79	+0.3
2,685,720	-		IAI47_12750	0.79	-0.2
2,685,743	+		IAI47_12750	0.81	+0.6
2,685,744	-		IAI47_12750	0.81	+1.0
2,685,745	+		IAI47_12750	0.81	+0.6
2,685,790	-		IAI47_12750	0.85	+1.4
2,685,831	+		IAI47_12750	0.88	-0.6
2,685,861	+				+1.2
2,685,861	+				+0.3
2,685,862	-				+0.5
2,685,901	-				-0.7
2,685,901	-				+0.9
2,685,912	+				+0.0
2,685,923	+				+0.8
2,685,923	+				-1.1
2,685,923	+				+2.4
2,685,924	-				-0.3
2,685,924	-				+0.3
2,685,924	-				-0.7
2,685,924	-				-0.6
2,685,973	+				-0.5
2,685,974	-				+0.1
2,685,974	-				+1.7
2,685,986	-				-0.3
2,685,986	-				-0.7
2,686,017	+				-0.1
2,686,018	-				+0.5
2,686,020	+				-0.2
2,686,020	+				-0.0
2,686,020	+				+0.8
2,686,069	+				+0.3
2,686,069	+				-1.3
2,686,069	+				-0.1
2,686,069	+				+0.5
2,686,074	+				-0.0
2,686,074	+				-0.0
2,686,074	+				-1.3
2,686,074	+				-0.2
2,686,074	+				-0.2