Strain Fitness in Pantoea sp. MT58 around IAI47_12185

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,577,285	+		IAI47_12175	0.60	-0.5
2,577,285	+		IAI47_12175	0.60	-0.1
2,577,285	+		IAI47_12175	0.60	-0.2
2,577,285	+		IAI47_12175	0.60	-2.9
2,577,285	+		IAI47_12175	0.60	-0.8
2,577,285	+		IAI47_12175	0.60	+0.2
2,577,286	-		IAI47_12175	0.60	+0.8
2,577,286	-		IAI47_12175	0.60	+0.2
2,577,289	-		IAI47_12175	0.61	-0.1
2,577,327	+		IAI47_12175	0.73	-0.8
2,577,392	-				+0.1
2,577,392	-				-1.0
2,577,392	-				-0.4
2,577,395	+				-0.9
2,577,396	-				-0.1
2,577,402	+				+2.7
2,577,403	-				+0.7
2,577,406	+				+0.7
2,577,406	+				-0.5
2,577,406	+				+0.4
2,577,406	+				+0.1
2,577,406	+				-0.1
2,577,407	-				-0.2
2,577,407	-				-3.3
2,577,407	-				+1.2
2,577,419	+				+1.8
2,577,419	+				-1.6
2,577,420	-				+0.3
2,577,436	+				-1.0
2,577,436	+				+0.1
2,577,436	+				-0.2
2,577,436	+				+0.3
2,577,436	+				-0.8
2,577,436	+				-0.4
2,577,436	+				-1.2
2,577,436	+				-0.4
2,577,437	-				+0.4
2,577,437	-				+0.2
2,577,437	-				-0.4
2,577,437	-				+0.1
2,577,440	+				-0.5
2,577,440	+				-0.2
2,577,440	+				-0.9
2,577,440	+				-0.8
2,577,440	+				-0.3
2,577,441	-				+0.6
2,577,441	-				+0.2
2,577,441	-				+1.2
2,577,441	-				-0.3
2,577,441	-				+0.2
2,577,515	+		IAI47_12180	0.23	-0.2
2,577,516	-		IAI47_12180	0.24	+0.2
2,577,516	-		IAI47_12180	0.24	+1.2
2,577,536	+		IAI47_12180	0.28	+0.8
2,577,537	-		IAI47_12180	0.28	+0.3
2,577,548	+		IAI47_12180	0.31	-1.3
2,577,548	+		IAI47_12180	0.31	+1.1
2,577,549	-		IAI47_12180	0.31	+0.9
2,577,567	-		IAI47_12180	0.35	+0.9
2,577,576	+		IAI47_12180	0.38	+0.8
2,577,577	-		IAI47_12180	0.38	-0.8
2,577,577	-		IAI47_12180	0.38	+0.6
2,577,577	-		IAI47_12180	0.38	+0.6
2,577,577	-		IAI47_12180	0.38	+0.2
2,577,630	+		IAI47_12180	0.50	+1.1
2,577,630	+		IAI47_12180	0.50	-0.3
2,577,631	-		IAI47_12180	0.50	-0.1
2,577,665	+		IAI47_12180	0.58	+0.3
2,577,666	-		IAI47_12180	0.58	-1.3
2,577,741	+		IAI47_12180	0.76	-0.9
2,577,742	-		IAI47_12180	0.76	-1.3
2,577,792	+		IAI47_12180	0.88	-0.2
2,577,792	+		IAI47_12180	0.88	+0.8
2,577,812	+				-0.3
2,577,812	+				+0.4
2,577,813	-				+0.4
2,577,829	+				+1.2
2,577,856	-				+0.2
2,577,860	+				+0.8
2,577,860	+				-2.6
2,577,890	+				-0.0
2,577,902	-				+1.2
2,577,910	+				+0.2
2,577,939	+				+0.2
2,577,939	+				-0.8
2,577,940	-				+0.2
2,577,940	-				+0.2
2,578,109	+				-1.1
2,578,109	+				-0.6
2,578,155	+				-0.2
2,578,156	-				+2.2
2,578,156	-				-0.5
2,578,176	+				-0.6
2,578,176	+				-1.3
2,578,177	-				-0.3
2,578,177	-				+0.8
2,578,177	-				-1.3
2,578,177	-				-1.1
2,579,771	-				-0.4
2,579,805	+				-1.6
2,579,805	+				-0.2
2,579,805	+				-0.9
2,579,806	-				-0.5
2,579,806	-				-1.8
2,579,806	-				-0.2
2,579,985	-		IAI47_12190	0.19	+1.1
2,579,988	+		IAI47_12190	0.19	-1.1
2,579,988	+		IAI47_12190	0.19	-2.3
2,579,989	-		IAI47_12190	0.19	-0.5
2,579,989	-		IAI47_12190	0.19	+0.7
2,580,057	+		IAI47_12190	0.26	-0.1
2,580,058	-		IAI47_12190	0.26	+1.6
2,580,058	-		IAI47_12190	0.26	-1.1
2,580,117	+		IAI47_12190	0.33	+3.4
2,580,118	-		IAI47_12190	0.33	+0.2
2,580,148	+		IAI47_12190	0.36	+0.6
2,580,148	+		IAI47_12190	0.36	+1.4
2,580,148	+		IAI47_12190	0.36	-0.3
2,580,149	-		IAI47_12190	0.36	+0.2
2,580,149	-		IAI47_12190	0.36	-0.1
2,580,149	-		IAI47_12190	0.36	+1.4
2,580,179	+		IAI47_12190	0.40	+0.5
2,580,179	+		IAI47_12190	0.40	+1.1
2,580,244	+		IAI47_12190	0.47	+0.6
2,580,245	-		IAI47_12190	0.47	+0.8
2,580,245	-		IAI47_12190	0.47	-0.3
2,580,261	-		IAI47_12190	0.49	-0.3
2,580,287	+		IAI47_12190	0.51	-0.3
2,580,392	+		IAI47_12190	0.63	+1.2
2,580,392	+		IAI47_12190	0.63	-0.1
2,580,393	-		IAI47_12190	0.63	-1.6
2,580,508	+		IAI47_12190	0.75	-0.4
2,580,508	+		IAI47_12190	0.75	+0.7
2,580,508	+		IAI47_12190	0.75	+0.9
2,580,567	+		IAI47_12190	0.82	-0.3
2,580,568	-		IAI47_12190	0.82	-0.8