Strain Fitness in Pantoea sp. MT58 around IAI47_08955

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,892,684	+				+1.2
1,892,685	-				-1.8
1,892,685	-				+0.4
1,892,685	-				-0.0
1,892,686	+				+0.4
1,892,687	-				+0.3
1,892,687	-				-0.1
1,892,713	+				-1.4
1,892,713	+				-0.7
1,892,713	+				-1.7
1,892,713	+				-1.6
1,892,713	+				-1.8
1,892,713	+				-1.4
1,892,714	-				-1.7
1,892,714	-				+0.4
1,892,714	-				+1.4
1,892,714	-				+0.3
1,892,714	-				-0.1
1,892,714	-				+0.5
1,892,715	+				-0.1
1,892,715	+				-1.2
1,892,715	+				+2.2
1,892,715	+				+2.0
1,892,716	-				-0.1
1,892,717	+				-0.2
1,892,717	+				-0.8
1,892,717	+				+0.5
1,892,718	-				-0.1
1,892,718	-				+1.8
1,892,718	-				+0.2
1,892,807	+				-1.5
1,892,808	-				-0.4
1,892,808	-				-3.0
1,892,823	+				+2.1
1,892,824	-				-1.4
1,892,828	+				-1.1
1,892,829	-				-0.2
1,892,868	+				+1.0
1,892,868	+				-1.1
1,892,929	+		IAI47_08950	0.14	+0.2
1,892,929	+		IAI47_08950	0.14	+0.7
1,892,929	+		IAI47_08950	0.14	-0.1
1,892,930	-		IAI47_08950	0.14	-0.9
1,893,001	+		IAI47_08950	0.31	-0.3
1,893,001	+		IAI47_08950	0.31	-0.2
1,893,001	+		IAI47_08950	0.31	-1.1
1,893,001	+		IAI47_08950	0.31	+2.5
1,893,002	-		IAI47_08950	0.32	-1.5
1,893,002	-		IAI47_08950	0.32	-0.8
1,893,002	-		IAI47_08950	0.32	-1.4
1,893,049	+		IAI47_08950	0.43	-1.1
1,893,049	+		IAI47_08950	0.43	+0.3
1,893,049	+		IAI47_08950	0.43	-0.4
1,893,049	+		IAI47_08950	0.43	-0.8
1,893,049	+		IAI47_08950	0.43	-0.4
1,893,049	+		IAI47_08950	0.43	-1.0
1,893,049	+		IAI47_08950	0.43	-0.6
1,893,049	+		IAI47_08950	0.43	-0.2
1,893,049	+		IAI47_08950	0.43	-0.8
1,893,050	-		IAI47_08950	0.43	-0.3
1,893,050	-		IAI47_08950	0.43	-0.2
1,893,050	-		IAI47_08950	0.43	-0.6
1,893,050	-		IAI47_08950	0.43	-1.0
1,893,089	+		IAI47_08950	0.53	-0.2
1,893,089	+		IAI47_08950	0.53	+0.4
1,893,089	+		IAI47_08950	0.53	-0.6
1,893,089	+		IAI47_08950	0.53	-0.2
1,893,090	-		IAI47_08950	0.53	-0.9
1,893,109	+		IAI47_08950	0.58	-1.9
1,893,109	+		IAI47_08950	0.58	+0.2
1,893,109	+		IAI47_08950	0.58	-0.1
1,893,121	-		IAI47_08950	0.61	-0.8
1,893,121	-		IAI47_08950	0.61	+0.2
1,893,221	-		IAI47_08950	0.85	-1.2
1,893,228	+		IAI47_08950	0.87	+0.2
1,893,228	+		IAI47_08950	0.87	-0.8
1,893,228	+		IAI47_08950	0.87	+2.0
1,893,229	-		IAI47_08950	0.87	-0.5
1,893,229	-		IAI47_08950	0.87	-2.1
1,893,336	+		IAI47_08955	0.17	-2.1
1,893,368	+		IAI47_08955	0.28	-1.8
1,893,368	+		IAI47_08955	0.28	-1.4
1,893,368	+		IAI47_08955	0.28	-1.8
1,893,368	+		IAI47_08955	0.28	+0.2
1,893,369	-		IAI47_08955	0.29	-0.3
1,893,369	-		IAI47_08955	0.29	-0.5
1,893,427	+		IAI47_08955	0.49	-1.1
1,893,428	-		IAI47_08955	0.50	-2.0
1,893,467	+		IAI47_08955	0.63	+0.2
1,893,467	+		IAI47_08955	0.63	+0.9
1,893,467	+		IAI47_08955	0.63	-1.1
1,893,467	+		IAI47_08955	0.63	+0.2
1,893,467	+		IAI47_08955	0.63	-0.5
1,893,467	+		IAI47_08955	0.63	-1.4
1,893,467	+		IAI47_08955	0.63	-1.1
1,893,467	+		IAI47_08955	0.63	-1.3
1,893,467	+		IAI47_08955	0.63	-1.4
1,893,467	+		IAI47_08955	0.63	-2.6
1,893,468	-		IAI47_08955	0.64	-0.2
1,893,468	-		IAI47_08955	0.64	-0.8
1,893,468	-		IAI47_08955	0.64	-1.4
1,893,468	-		IAI47_08955	0.64	-0.8
1,893,468	-		IAI47_08955	0.64	-2.1
1,893,468	-		IAI47_08955	0.64	-0.2
1,893,468	-		IAI47_08955	0.64	-0.5
1,893,468	-		IAI47_08955	0.64	-0.7
1,893,468	-		IAI47_08955	0.64	-2.5
1,893,468	-		IAI47_08955	0.64	-3.6
1,893,468	-		IAI47_08955	0.64	-1.5
1,893,468	-		IAI47_08955	0.64	-2.1
1,893,468	-		IAI47_08955	0.64	-1.6
1,893,547	+				+1.0
1,893,548	-				-0.5
1,893,548	-				-0.4
1,893,567	+				+0.8
1,893,568	-				-0.1
1,893,582	-				-0.8
1,893,582	-				-0.2
1,893,582	-				+1.2
1,893,604	+				+1.1
1,893,620	+				-0.8
1,893,738	+		IAI47_08960	0.21	-2.1
1,893,738	+		IAI47_08960	0.21	+0.2
1,893,739	-		IAI47_08960	0.21	+0.5
1,893,743	+		IAI47_08960	0.22	+0.2
1,893,744	-		IAI47_08960	0.22	-0.8
1,893,744	-		IAI47_08960	0.22	+0.2
1,893,745	+		IAI47_08960	0.22	+0.6
1,893,745	+		IAI47_08960	0.22	-0.1
1,893,745	+		IAI47_08960	0.22	-0.4
1,893,746	-		IAI47_08960	0.22	-1.4
1,893,746	-		IAI47_08960	0.22	-0.9
1,893,758	-		IAI47_08960	0.24	+0.8
1,893,758	-		IAI47_08960	0.24	-1.6
1,893,862	+		IAI47_08960	0.42	-0.0
1,893,862	+		IAI47_08960	0.42	-3.1
1,893,862	+		IAI47_08960	0.42	-0.3
1,893,863	-		IAI47_08960	0.42	+0.1
1,893,863	-		IAI47_08960	0.42	-0.8
1,893,863	-		IAI47_08960	0.42	-0.7
1,893,863	-		IAI47_08960	0.42	+0.8
1,893,863	-		IAI47_08960	0.42	-0.8
1,893,960	-		IAI47_08960	0.58	+1.2
1,893,960	-		IAI47_08960	0.58	+0.6
1,893,997	-		IAI47_08960	0.64	-0.6
1,893,997	-		IAI47_08960	0.64	-0.5
1,894,012	+		IAI47_08960	0.66	-0.6
1,894,012	+		IAI47_08960	0.66	-0.5
1,894,191	-				+0.2
1,894,196	+				+0.2
1,894,196	+				+0.2
1,894,196	+				-1.4
1,894,197	-				+0.4
1,894,218	+				+0.2
1,894,219	-				+0.5
1,894,219	-				-0.9
1,894,219	-				-0.8
1,894,219	-				+0.9
1,894,322	-				-0.5
1,894,347	+		IAI47_08965	0.11	+0.3
1,894,347	+		IAI47_08965	0.11	+0.2
1,894,348	-		IAI47_08965	0.11	+0.9
1,894,348	-		IAI47_08965	0.11	+2.0
1,894,367	-		IAI47_08965	0.13	+0.2
1,894,367	-		IAI47_08965	0.13	-0.4
1,894,367	-		IAI47_08965	0.13	+1.4
1,894,400	+		IAI47_08965	0.16	+0.4
1,894,410	+		IAI47_08965	0.17	+0.2
1,894,411	-		IAI47_08965	0.17	+0.2
1,894,428	+		IAI47_08965	0.19	+0.2
1,894,428	+		IAI47_08965	0.19	-0.8
1,894,429	-		IAI47_08965	0.19	+0.9
1,894,429	-		IAI47_08965	0.19	-0.4
1,894,429	-		IAI47_08965	0.19	+0.2
1,894,429	-		IAI47_08965	0.19	+0.6
1,894,512	+		IAI47_08965	0.27	-1.1
1,894,523	+		IAI47_08965	0.29	-0.8
1,894,523	+		IAI47_08965	0.29	-0.6
1,894,524	-		IAI47_08965	0.29	+0.3
1,894,567	-		IAI47_08965	0.33	-0.6
1,894,567	-		IAI47_08965	0.33	+0.5
1,894,567	-		IAI47_08965	0.33	-0.9