Strain Fitness in Pantoea sp. MT58 around IAI47_07720

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,636,002	+		IAI47_07715	0.55	+1.6
1,636,003	-		IAI47_07715	0.55	-0.1
1,636,003	-		IAI47_07715	0.55	-0.8
1,636,003	-		IAI47_07715	0.55	-1.7
1,636,003	-		IAI47_07715	0.55	-1.1
1,636,074	+		IAI47_07715	0.59	-0.4
1,636,075	-		IAI47_07715	0.59	-0.6
1,636,075	-		IAI47_07715	0.59	-0.5
1,636,075	-		IAI47_07715	0.59	-0.5
1,636,145	+		IAI47_07715	0.62	+1.2
1,636,145	+		IAI47_07715	0.62	-0.1
1,636,146	-		IAI47_07715	0.63	+0.2
1,636,146	-		IAI47_07715	0.63	-0.3
1,636,215	+		IAI47_07715	0.66	-0.4
1,636,215	+		IAI47_07715	0.66	+1.2
1,636,215	+		IAI47_07715	0.66	+0.6
1,636,215	+		IAI47_07715	0.66	-0.0
1,636,215	+		IAI47_07715	0.66	+0.8
1,636,215	+		IAI47_07715	0.66	-1.0
1,636,216	-		IAI47_07715	0.66	+0.6
1,636,253	+		IAI47_07715	0.68	-0.3
1,636,271	+		IAI47_07715	0.69	-0.1
1,636,272	-		IAI47_07715	0.69	-0.2
1,636,338	+		IAI47_07715	0.73	-0.4
1,636,339	-		IAI47_07715	0.73	-2.0
1,636,460	+		IAI47_07715	0.79	-0.4
1,636,461	-		IAI47_07715	0.79	-0.1
1,636,461	-		IAI47_07715	0.79	-0.2
1,636,461	-		IAI47_07715	0.79	+2.8
1,636,461	-		IAI47_07715	0.79	-0.5
1,636,504	-		IAI47_07715	0.81	-0.3
1,636,504	-		IAI47_07715	0.81	+1.0
1,636,514	+		IAI47_07715	0.82	+1.5
1,636,542	+		IAI47_07715	0.83	+0.8
1,636,543	-		IAI47_07715	0.83	-0.4
1,636,565	+		IAI47_07715	0.84	+0.9
1,636,566	-		IAI47_07715	0.84	+0.3
1,636,566	-		IAI47_07715	0.84	-0.1
1,636,566	-		IAI47_07715	0.84	+0.5
1,636,654	-		IAI47_07715	0.89	-0.9
1,636,654	-		IAI47_07715	0.89	-0.8
1,636,656	+		IAI47_07715	0.89	+0.6
1,636,656	+		IAI47_07715	0.89	-0.4
1,636,656	+		IAI47_07715	0.89	+1.2
1,636,656	+		IAI47_07715	0.89	-2.4
1,636,656	+		IAI47_07715	0.89	+0.2
1,636,656	+		IAI47_07715	0.89	-0.9
1,636,657	-		IAI47_07715	0.89	-0.7
1,636,811	+				+1.5
1,636,811	+				-2.0
1,636,811	+				+1.2
1,636,811	+				+0.4
1,636,811	+				-0.0
1,636,811	+				-0.5
1,636,811	+				+1.2
1,636,811	+				+0.1
1,636,812	-				-0.5
1,636,812	-				-0.0
1,636,812	-				-0.2
1,636,812	-				-0.0
1,636,812	-				-0.0
1,636,823	+				+0.5
1,636,823	+				+0.8
1,636,934	+				+0.7
1,636,934	+				+0.1
1,636,935	-				+0.6
1,636,935	-				+0.5
1,636,935	-				+2.4
1,636,935	-				+1.4
1,636,951	+				+0.2
1,636,951	+				+0.2
1,636,952	-				-1.1
1,636,952	-				-1.4
1,636,952	-				-1.5
1,636,952	-				+0.7
1,636,952	-				+0.5
1,636,998	+		IAI47_07720	0.22	-0.5
1,636,999	-		IAI47_07720	0.22	-1.0
1,637,020	+		IAI47_07720	0.32	+0.6
1,637,021	-		IAI47_07720	0.33	-0.0
1,637,021	-		IAI47_07720	0.33	+0.5
1,637,063	+		IAI47_07720	0.53	+0.8
1,637,063	+		IAI47_07720	0.53	+0.0
1,637,063	+		IAI47_07720	0.53	-1.5
1,637,063	+		IAI47_07720	0.53	-0.4
1,637,063	+		IAI47_07720	0.53	-1.2
1,637,063	+		IAI47_07720	0.53	-0.5
1,637,063	+		IAI47_07720	0.53	+0.4
1,637,063	+		IAI47_07720	0.53	-1.6
1,637,063	+		IAI47_07720	0.53	-0.2
1,637,063	+		IAI47_07720	0.53	-2.6
1,637,063	+		IAI47_07720	0.53	+0.8
1,637,063	+		IAI47_07720	0.53	-0.4
1,637,064	-		IAI47_07720	0.54	+0.9
1,637,064	-		IAI47_07720	0.54	-0.4
1,637,064	-		IAI47_07720	0.54	-0.8
1,637,064	-		IAI47_07720	0.54	-1.0
1,637,064	-		IAI47_07720	0.54	+0.8
1,637,064	-		IAI47_07720	0.54	-0.3
1,637,064	-		IAI47_07720	0.54	-0.1
1,637,064	-		IAI47_07720	0.54	-0.8
1,637,075	+		IAI47_07720	0.59	-0.8
1,637,075	+		IAI47_07720	0.59	-0.3
1,637,075	+		IAI47_07720	0.59	-0.5
1,637,076	-		IAI47_07720	0.60	-0.5
1,637,076	-		IAI47_07720	0.60	-0.9
1,637,076	-		IAI47_07720	0.60	+0.5
1,637,076	-		IAI47_07720	0.60	-2.1
1,637,111	+		IAI47_07720	0.77	-0.8
1,637,111	+		IAI47_07720	0.77	+0.2
1,637,112	-		IAI47_07720	0.77	-0.1
1,637,138	-				-0.5
1,637,138	-				-0.5
1,637,173	+				-0.8
1,637,173	+				+1.2
1,637,173	+				-0.6
1,637,173	+				-0.1
1,637,173	+				+1.0
1,637,173	+				-1.0
1,637,173	+				+1.8
1,637,173	+				-1.4
1,637,173	+				-0.9
1,637,173	+				+0.6
1,637,173	+				-1.8
1,637,173	+				-0.8
1,637,174	-				-1.4
1,637,174	-				+0.2
1,637,174	-				+0.6
1,637,174	-				+0.4
1,637,174	-				-1.3
1,637,174	-				+0.6
1,637,174	-				-0.0
1,637,174	-				+1.8
1,637,174	-				+0.3
1,637,174	-				-0.4
1,637,250	+				-1.2
1,637,250	+				+1.5
1,637,250	+				-0.3
1,637,251	-				-1.0
1,637,251	-				+0.6
1,637,272	+				+0.2
1,637,273	-				+0.8
1,637,278	-				+0.3
1,637,278	-				-2.0
1,637,298	-				+0.6
1,637,298	-				+2.3
1,637,298	-				-3.3
1,637,395	+				+1.5
1,637,395	+				+0.0
1,637,396	-				-0.3
1,637,396	-				-0.0
1,637,396	-				-0.3
1,637,396	-				+0.5
1,637,403	-				-0.4
1,637,403	-				+1.0
1,637,449	-				-0.1
1,637,452	+				+0.6
1,637,462	+				-0.4
1,637,462	+				+0.4
1,637,462	+				-0.0
1,637,463	-				+0.3
1,637,542	-				-0.9
1,637,577	+				-0.5
1,637,578	-				-0.2
1,637,595	+				-0.1
1,637,595	+				+0.2
1,637,595	+				-1.0
1,637,595	+				+1.7
1,637,595	+				+0.4
1,637,596	-				+0.3
1,637,596	-				-0.5
1,637,596	-				-0.5
1,637,596	-				+0.2
1,637,596	-				+1.3
1,637,596	-				-1.2
1,637,692	+				+1.5
1,637,693	-				-1.4
1,637,697	+				+1.2
1,637,698	-				-0.4
1,637,716	+				-1.4
1,637,717	-				-0.1
1,637,733	-				-0.8
1,637,738	+				+0.5
1,637,738	+				+1.4
1,637,738	+				+0.6
1,637,739	-				+0.1
1,637,739	-				+0.5
1,637,765	+				+0.2
1,637,766	-				-0.2
1,637,766	-				+0.6
1,637,778	-				-0.6
1,637,789	+				-0.8
1,637,789	+				-0.0
1,637,801	-				+1.0
1,637,801	-				-0.4
1,637,801	-				-0.0
1,637,850	+				-1.8
1,637,851	-				-0.2
1,637,851	-				-0.6
1,637,862	+				+0.2
1,637,863	-				-1.8
1,637,868	+				+0.6
1,637,868	+				-0.7
1,637,868	+				-0.0
1,637,869	-				-0.7
1,637,869	-				-0.9
1,637,898	+				-0.5
1,637,898	+				-0.5
1,637,899	-				-0.8
1,637,941	+				+0.5
1,637,941	+				-0.6
1,637,941	+				-1.2
1,637,941	+				+0.3
1,637,941	+				-0.2
1,637,942	-				-0.1
1,637,942	-				+0.1
1,637,942	-				-0.1
1,638,020	+		IAI47_07725	0.12	-0.8
1,638,020	+		IAI47_07725	0.12	+0.5
1,638,020	+		IAI47_07725	0.12	-0.2
1,638,020	+		IAI47_07725	0.12	+0.3
1,638,021	-		IAI47_07725	0.12	-1.1
1,638,021	-		IAI47_07725	0.12	-0.6
1,638,053	+		IAI47_07725	0.14	-1.0
1,638,054	-		IAI47_07725	0.15	+0.3
1,638,066	+		IAI47_07725	0.15	-0.1
1,638,066	+		IAI47_07725	0.15	+1.5
1,638,066	+		IAI47_07725	0.15	+0.7
1,638,066	+		IAI47_07725	0.15	-0.4
1,638,066	+		IAI47_07725	0.15	+0.6
1,638,067	-		IAI47_07725	0.15	-1.1
1,638,067	-		IAI47_07725	0.15	+0.9
1,638,085	+		IAI47_07725	0.17	+0.5
1,638,086	-		IAI47_07725	0.17	-0.2
1,638,115	+		IAI47_07725	0.19	+0.6
1,638,115	+		IAI47_07725	0.19	+0.2
1,638,115	+		IAI47_07725	0.19	-0.2
1,638,115	+		IAI47_07725	0.19	+1.2
1,638,116	-		IAI47_07725	0.19	-0.3
1,638,116	-		IAI47_07725	0.19	+1.6
1,638,118	+		IAI47_07725	0.19	+1.2
1,638,118	+		IAI47_07725	0.19	-0.4
1,638,119	-		IAI47_07725	0.19	-0.5
1,638,119	-		IAI47_07725	0.19	+0.8
1,638,120	+		IAI47_07725	0.19	+0.2
1,638,121	-		IAI47_07725	0.19	-0.4
1,638,121	-		IAI47_07725	0.19	-0.4
1,638,121	-		IAI47_07725	0.19	+0.4
1,638,121	-		IAI47_07725	0.19	-0.8
1,638,135	+		IAI47_07725	0.20	+0.7
1,638,136	-		IAI47_07725	0.20	-0.6