Strain Fitness in Pantoea sp. MT58 around IAI47_07305

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,543,413	+		IAI47_07300	0.69	+1.1
1,543,533	+				+0.2
1,543,607	-				+0.3
1,543,607	-				-1.9
1,543,607	-				+0.8
1,543,610	-				-0.9
1,543,610	-				-0.6
1,543,667	+				+0.6
1,543,670	+				+0.2
1,543,826	+				+0.7
1,544,099	-				+0.4
1,544,117	-				-0.2
1,544,170	+				+0.2
1,544,192	-				-0.0
1,544,345	-				+0.7
1,544,381	+				-0.3
1,544,385	+				-0.0
1,544,386	-				-0.8
1,544,386	-				+0.2
1,544,423	+				-0.9
1,544,426	+				+1.6
1,544,426	+				-1.1
1,544,481	+		IAI47_07305	0.16	-0.1
1,544,482	-		IAI47_07305	0.16	-0.4
1,544,494	-		IAI47_07305	0.18	-0.8
1,544,541	+		IAI47_07305	0.26	+0.2
1,544,595	-		IAI47_07305	0.35	+1.0
1,544,595	-		IAI47_07305	0.35	+0.7
1,544,657	+		IAI47_07305	0.45	-0.1
1,544,658	-		IAI47_07305	0.46	+0.6
1,544,658	-		IAI47_07305	0.46	-0.6
1,544,658	-		IAI47_07305	0.46	-0.6
1,544,695	+		IAI47_07305	0.52	+0.5
1,544,732	+		IAI47_07305	0.58	-0.6
1,544,732	+		IAI47_07305	0.58	-0.1
1,544,733	-		IAI47_07305	0.58	-0.8
1,544,733	-		IAI47_07305	0.58	+0.8
1,544,805	+		IAI47_07305	0.70	+0.2
1,544,806	-		IAI47_07305	0.71	-0.3
1,544,806	-		IAI47_07305	0.71	+0.0
1,544,806	-		IAI47_07305	0.71	-0.7
1,544,806	-		IAI47_07305	0.71	+0.8
1,544,818	-		IAI47_07305	0.73	+0.2
1,544,902	+		IAI47_07305	0.87	-1.3
1,544,902	+		IAI47_07305	0.87	+0.5
1,544,902	+		IAI47_07305	0.87	+0.1
1,544,902	+		IAI47_07305	0.87	+0.6
1,544,902	+		IAI47_07305	0.87	+0.2
1,544,902	+		IAI47_07305	0.87	+0.7
1,544,902	+		IAI47_07305	0.87	-0.7
1,544,902	+		IAI47_07305	0.87	-0.1
1,544,902	+		IAI47_07305	0.87	+0.2
1,544,903	-		IAI47_07305	0.87	+0.7
1,544,903	-		IAI47_07305	0.87	+0.8
1,544,903	-		IAI47_07305	0.87	-0.4
1,544,903	-		IAI47_07305	0.87	+0.0
1,544,903	-		IAI47_07305	0.87	-0.2
1,544,903	-		IAI47_07305	0.87	-1.9
1,544,903	-		IAI47_07305	0.87	-0.6
1,544,903	-		IAI47_07305	0.87	-0.7
1,544,903	-		IAI47_07305	0.87	-0.0
1,544,903	-		IAI47_07305	0.87	-1.0
1,544,903	-		IAI47_07305	0.87	-1.5
1,544,903	-		IAI47_07305	0.87	+0.6
1,544,906	+		IAI47_07305	0.87	+1.3
1,544,906	+		IAI47_07305	0.87	-0.1
1,544,906	+		IAI47_07305	0.87	-2.6
1,544,906	+		IAI47_07305	0.87	-0.8
1,544,906	+		IAI47_07305	0.87	-0.1
1,544,906	+		IAI47_07305	0.87	+0.2
1,544,906	+		IAI47_07305	0.87	-0.3
1,544,907	-		IAI47_07305	0.88	+0.0
1,544,907	-		IAI47_07305	0.88	+0.5
1,544,907	-		IAI47_07305	0.88	-0.8
1,544,907	-		IAI47_07305	0.88	+0.5
1,544,907	-		IAI47_07305	0.88	-0.4
1,544,907	-		IAI47_07305	0.88	+1.2
1,544,907	-		IAI47_07305	0.88	+0.9
1,544,907	-		IAI47_07305	0.88	-0.2
1,544,907	-		IAI47_07305	0.88	+2.1
1,544,907	-		IAI47_07305	0.88	+2.4
1,544,971	+				-0.7
1,544,971	+				+1.1
1,544,971	+				+0.6
1,544,971	+				-1.6
1,544,971	+				+5.5
1,544,972	-				+0.4
1,544,972	-				+0.1
1,544,972	-				-0.4
1,544,972	-				-0.1
1,544,983	+				+1.2
1,545,020	+				+0.0
1,545,020	+				-2.5
1,545,020	+				+0.0
1,545,020	+				-1.8
1,545,020	+				+0.5
1,545,020	+				-0.8
1,545,020	+				-1.1
1,545,021	-				+0.2
1,545,021	-				-0.3
1,545,027	+				+0.5
1,545,028	-				-0.7
1,545,028	-				-1.8
1,545,028	-				+1.6
1,545,028	-				-0.1
1,545,034	-				+0.6
1,545,061	+				+0.2
1,545,061	+				-0.2
1,545,061	+				+1.1
1,545,061	+				-1.2
1,545,061	+				+0.2
1,545,061	+				+0.7
1,545,061	+				+0.2
1,545,061	+				-1.0
1,545,062	-				+0.4
1,545,062	-				-0.2
1,545,062	-				-0.8
1,545,062	-				-1.1
1,545,062	-				-1.5
1,545,062	-				+1.2
1,545,066	+				+0.9
1,545,066	+				+1.0
1,545,066	+				+1.4
1,545,067	-				-0.6
1,545,078	+				+1.6
1,545,078	+				+1.8
1,545,078	+				+0.2
1,545,078	+				+0.3
1,545,078	+				-0.8
1,545,078	+				-1.2
1,545,078	+				-0.8
1,545,079	-				-1.0
1,545,079	-				+0.7
1,545,079	-				-0.4
1,545,079	-				+0.2
1,545,079	-				-0.8
1,545,082	+				+1.2
1,545,082	+				+1.4
1,545,091	+				+1.1
1,545,092	-				-0.1
1,545,092	-				+0.1
1,545,092	-				-0.3
1,545,092	-				+0.2
1,545,092	-				-0.4
1,545,138	+		IAI47_07310	0.13	+0.2
1,545,138	+		IAI47_07310	0.13	-0.5
1,545,139	-		IAI47_07310	0.13	-0.4
1,545,139	-		IAI47_07310	0.13	-1.7
1,545,160	+		IAI47_07310	0.16	+1.7
1,545,160	+		IAI47_07310	0.16	-0.7
1,545,160	+		IAI47_07310	0.16	+1.6
1,545,161	-		IAI47_07310	0.16	+0.5
1,545,165	-		IAI47_07310	0.16	+0.1
1,545,190	+		IAI47_07310	0.20	+0.5
1,545,190	+		IAI47_07310	0.20	+0.6
1,545,190	+		IAI47_07310	0.20	+1.6
1,545,190	+		IAI47_07310	0.20	-0.7
1,545,190	+		IAI47_07310	0.20	+0.4
1,545,190	+		IAI47_07310	0.20	+0.7
1,545,191	-		IAI47_07310	0.20	-0.3
1,545,191	-		IAI47_07310	0.20	+0.0
1,545,191	-		IAI47_07310	0.20	-0.6
1,545,191	-		IAI47_07310	0.20	+0.7
1,545,191	-		IAI47_07310	0.20	+0.8
1,545,191	-		IAI47_07310	0.20	-0.3
1,545,191	-		IAI47_07310	0.20	-0.2
1,545,191	-		IAI47_07310	0.20	-0.6
1,545,191	-		IAI47_07310	0.20	-0.1
1,545,191	-		IAI47_07310	0.20	+1.2
1,545,191	-		IAI47_07310	0.20	+0.4
1,545,205	+		IAI47_07310	0.22	+2.0
1,545,205	+		IAI47_07310	0.22	-1.0
1,545,206	-		IAI47_07310	0.22	+0.8
1,545,206	-		IAI47_07310	0.22	-0.1
1,545,206	-		IAI47_07310	0.22	+3.0
1,545,206	-		IAI47_07310	0.22	+1.2
1,545,206	-		IAI47_07310	0.22	+0.2
1,545,206	-		IAI47_07310	0.22	+0.2
1,545,206	-		IAI47_07310	0.22	-0.1
1,545,206	-		IAI47_07310	0.22	+2.0
1,545,283	+		IAI47_07310	0.33	-0.9
1,545,284	-		IAI47_07310	0.33	-0.9
1,545,296	+		IAI47_07310	0.35	-1.1
1,545,296	+		IAI47_07310	0.35	+0.8
1,545,296	+		IAI47_07310	0.35	+0.2
1,545,296	+		IAI47_07310	0.35	-0.5
1,545,296	+		IAI47_07310	0.35	-1.1
1,545,297	-		IAI47_07310	0.35	-0.3
1,545,297	-		IAI47_07310	0.35	-0.8
1,545,297	-		IAI47_07310	0.35	-0.2
1,545,297	-		IAI47_07310	0.35	+1.2
1,545,338	+		IAI47_07310	0.41	-0.5
1,545,338	+		IAI47_07310	0.41	+0.8
1,545,338	+		IAI47_07310	0.41	+0.4
1,545,338	+		IAI47_07310	0.41	+1.1
1,545,338	+		IAI47_07310	0.41	+1.1
1,545,338	+		IAI47_07310	0.41	+1.0
1,545,338	+		IAI47_07310	0.41	+0.0
1,545,338	+		IAI47_07310	0.41	-1.6
1,545,338	+		IAI47_07310	0.41	+0.2
1,545,338	+		IAI47_07310	0.41	-0.8
1,545,338	+		IAI47_07310	0.41	-0.6
1,545,338	+		IAI47_07310	0.41	+0.2
1,545,338	+		IAI47_07310	0.41	+0.5
1,545,339	-		IAI47_07310	0.41	+0.2
1,545,339	-		IAI47_07310	0.41	-0.8
1,545,339	-		IAI47_07310	0.41	-0.7
1,545,339	-		IAI47_07310	0.41	+0.2
1,545,339	-		IAI47_07310	0.41	+1.8
1,545,339	-		IAI47_07310	0.41	-0.6
1,545,339	-		IAI47_07310	0.41	+0.5
1,545,339	-		IAI47_07310	0.41	+0.6
1,545,339	-		IAI47_07310	0.41	+1.7
1,545,339	-		IAI47_07310	0.41	+0.7
1,545,377	+		IAI47_07310	0.47	-0.3
1,545,377	+		IAI47_07310	0.47	-0.2
1,545,378	-		IAI47_07310	0.47	-1.3
1,545,378	-		IAI47_07310	0.47	+1.6
1,545,378	-		IAI47_07310	0.47	-0.8
1,545,380	+		IAI47_07310	0.47	+0.6
1,545,381	-		IAI47_07310	0.47	-1.9
1,545,381	-		IAI47_07310	0.47	+1.0
1,545,381	-		IAI47_07310	0.47	+0.4
1,545,388	+		IAI47_07310	0.48	-0.2
1,545,388	+		IAI47_07310	0.48	-0.1
1,545,388	+		IAI47_07310	0.48	+0.6
1,545,388	+		IAI47_07310	0.48	-0.0
1,545,388	+		IAI47_07310	0.48	+1.2
1,545,389	-		IAI47_07310	0.48	+0.2
1,545,471	+		IAI47_07310	0.60	-1.3
1,545,471	+		IAI47_07310	0.60	-1.3
1,545,472	-		IAI47_07310	0.60	+0.2
1,545,575	+		IAI47_07310	0.75	+0.7
1,545,575	+		IAI47_07310	0.75	-0.3
1,545,575	+		IAI47_07310	0.75	-0.3
1,545,575	+		IAI47_07310	0.75	-0.6
1,545,575	+		IAI47_07310	0.75	+1.2
1,545,575	+		IAI47_07310	0.75	-0.2
1,545,575	+		IAI47_07310	0.75	-0.8
1,545,576	-		IAI47_07310	0.75	-0.3
1,545,576	-		IAI47_07310	0.75	+0.9
1,545,576	-		IAI47_07310	0.75	+0.1
1,545,576	-		IAI47_07310	0.75	-0.0
1,545,576	-		IAI47_07310	0.75	+0.2
1,545,576	-		IAI47_07310	0.75	+0.2
1,545,576	-		IAI47_07310	0.75	-0.0
1,545,576	-		IAI47_07310	0.75	-1.2
1,545,576	-		IAI47_07310	0.75	+0.7
1,545,576	-		IAI47_07310	0.75	+0.6
1,545,576	-		IAI47_07310	0.75	+0.7
1,545,576	-		IAI47_07310	0.75	-0.7
1,545,578	+		IAI47_07310	0.75	-1.1
1,545,578	+		IAI47_07310	0.75	-1.9
1,545,578	+		IAI47_07310	0.75	+0.8
1,545,578	+		IAI47_07310	0.75	+1.2
1,545,579	-		IAI47_07310	0.75	+1.0
1,545,702	+				+1.6
1,545,710	+				-0.1
1,545,789	-				-0.3
1,545,789	-				-1.0
1,545,804	-				-0.3
1,545,804	-				+0.2
1,545,807	+				+0.9
1,545,807	+				+0.4
1,545,807	+				+1.2
1,545,807	+				+2.2
1,545,808	-				-0.6
1,545,809	+				-1.3
1,545,816	+				-1.1
1,545,817	-				+0.7
1,545,830	-				-0.5
1,545,830	-				+1.0
1,545,830	-				+1.2
1,545,834	-				-0.1
1,545,906	+				-0.8
1,545,924	+				-0.4
1,545,924	+				+1.0
1,545,925	-				-0.8