Strain Fitness in Pantoea sp. MT58 around IAI47_06755

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,407,560	-				+0.2
1,407,560	-				-0.2
1,407,560	-				-1.8
1,407,591	+				-0.1
1,407,591	+				-0.3
1,407,592	-				+2.2
1,407,592	-				+0.2
1,407,592	-				+1.1
1,407,592	-				-0.2
1,407,592	-				+0.6
1,407,620	+				-1.1
1,407,620	+				-0.5
1,407,620	+				-0.2
1,407,621	-				-0.8
1,407,643	+				-1.7
1,407,643	+				-0.2
1,407,721	+				+0.2
1,407,721	+				+0.7
1,407,722	-				+0.2
1,407,751	-		IAI47_06750	0.12	-0.8
1,407,761	+		IAI47_06750	0.13	-1.4
1,407,762	-		IAI47_06750	0.13	-1.3
1,407,765	+		IAI47_06750	0.14	-0.2
1,407,766	-		IAI47_06750	0.14	-1.6
1,407,766	-		IAI47_06750	0.14	-0.1
1,407,777	+		IAI47_06750	0.15	-0.6
1,407,777	+		IAI47_06750	0.15	-0.8
1,407,778	-		IAI47_06750	0.16	-1.3
1,407,778	-		IAI47_06750	0.16	-0.8
1,407,886	+		IAI47_06750	0.31	-0.8
1,407,886	+		IAI47_06750	0.31	-1.3
1,407,887	-		IAI47_06750	0.31	-1.3
1,407,887	-		IAI47_06750	0.31	-1.6
1,407,903	-		IAI47_06750	0.33	-1.3
1,407,912	+		IAI47_06750	0.34	-0.2
1,407,913	-		IAI47_06750	0.34	+1.8
1,407,921	-		IAI47_06750	0.35	-0.9
1,407,921	-		IAI47_06750	0.35	-1.1
1,407,956	+		IAI47_06750	0.40	-0.2
1,407,956	+		IAI47_06750	0.40	-0.1
1,407,957	-		IAI47_06750	0.40	-0.2
1,407,959	+		IAI47_06750	0.41	+1.0
1,407,960	-		IAI47_06750	0.41	-4.5
1,407,960	-		IAI47_06750	0.41	-2.1
1,407,960	-		IAI47_06750	0.41	-1.2
1,407,974	+		IAI47_06750	0.43	-0.3
1,407,974	+		IAI47_06750	0.43	-0.3
1,407,975	-		IAI47_06750	0.43	+0.0
1,407,986	+		IAI47_06750	0.44	-1.6
1,407,986	+		IAI47_06750	0.44	-0.3
1,407,986	+		IAI47_06750	0.44	-2.3
1,407,987	-		IAI47_06750	0.45	+0.2
1,407,987	-		IAI47_06750	0.45	-1.3
1,408,027	+		IAI47_06750	0.50	-2.1
1,408,097	+		IAI47_06750	0.60	-1.0
1,408,097	+		IAI47_06750	0.60	+1.8
1,408,097	+		IAI47_06750	0.60	-0.5
1,408,097	+		IAI47_06750	0.60	-0.3
1,408,098	-		IAI47_06750	0.60	-2.1
1,408,098	-		IAI47_06750	0.60	-1.6
1,408,098	-		IAI47_06750	0.60	-2.6
1,408,098	-		IAI47_06750	0.60	-0.0
1,408,100	-		IAI47_06750	0.60	+1.7
1,408,100	-		IAI47_06750	0.60	+0.2
1,408,135	+		IAI47_06750	0.65	+0.2
1,408,135	+		IAI47_06750	0.65	+0.2
1,408,136	-		IAI47_06750	0.65	-0.1
1,408,136	-		IAI47_06750	0.65	-2.4
1,408,157	-		IAI47_06750	0.68	+0.9
1,408,157	-		IAI47_06750	0.68	-2.3
1,408,189	+		IAI47_06750	0.73	-1.3
1,408,189	+		IAI47_06750	0.73	+0.9
1,408,189	+		IAI47_06750	0.73	-2.2
1,408,189	+		IAI47_06750	0.73	-2.9
1,408,189	+		IAI47_06750	0.73	-3.0
1,408,189	+		IAI47_06750	0.73	-1.7
1,408,189	+		IAI47_06750	0.73	+0.4
1,408,189	+		IAI47_06750	0.73	+0.0
1,408,190	-		IAI47_06750	0.73	-1.1
1,408,190	-		IAI47_06750	0.73	+0.4
1,408,190	-		IAI47_06750	0.73	+0.2
1,408,190	-		IAI47_06750	0.73	-0.5
1,408,190	-		IAI47_06750	0.73	-0.8
1,408,190	-		IAI47_06750	0.73	+0.2
1,408,190	-		IAI47_06750	0.73	-0.8
1,408,190	-		IAI47_06750	0.73	-0.9
1,408,193	-		IAI47_06750	0.73	-0.4
1,408,193	-		IAI47_06750	0.73	-2.6
1,408,193	-		IAI47_06750	0.73	+1.6
1,408,216	+		IAI47_06750	0.76	-2.8
1,408,219	+		IAI47_06750	0.77	-0.9
1,408,219	+		IAI47_06750	0.77	-0.8
1,408,219	+		IAI47_06750	0.77	-2.1
1,408,220	-		IAI47_06750	0.77	+0.2
1,408,220	-		IAI47_06750	0.77	-1.2
1,408,283	+		IAI47_06750	0.86	-0.8
1,408,283	+		IAI47_06750	0.86	-1.3
1,408,283	+		IAI47_06750	0.86	-0.2
1,408,344	+				-1.3
1,408,344	+				-0.3
1,408,344	+				-0.3
1,408,345	-				+0.4
1,408,345	-				-1.3
1,408,429	+				-1.0
1,408,429	+				-0.8
1,408,429	+				-0.8
1,408,430	-				+0.4
1,408,430	-				-0.3
1,408,430	-				+2.0
1,408,430	-				-1.0
1,408,457	-				-0.9
1,408,457	-				-0.2
1,408,523	-				+0.2
1,408,523	-				+0.6
1,408,532	+				-0.2
1,408,549	+				-0.2
1,408,549	+				-1.1
1,408,637	+				-0.4
1,408,676	+				-0.8
1,408,676	+				-0.8
1,408,677	-				+0.2
1,408,677	-				-0.1
1,408,766	+		IAI47_06755	0.14	+0.2
1,408,767	-		IAI47_06755	0.14	-0.6
1,408,823	+		IAI47_06755	0.18	+0.2
1,408,824	-		IAI47_06755	0.18	+1.8
1,408,824	-		IAI47_06755	0.18	-0.8
1,408,824	-		IAI47_06755	0.18	+0.7
1,408,825	+		IAI47_06755	0.18	-1.3
1,408,825	+		IAI47_06755	0.18	-1.6
1,408,825	+		IAI47_06755	0.18	-1.8
1,408,825	+		IAI47_06755	0.18	+1.2
1,408,825	+		IAI47_06755	0.18	+0.2
1,408,825	+		IAI47_06755	0.18	+0.1
1,408,825	+		IAI47_06755	0.18	+0.8
1,408,825	+		IAI47_06755	0.18	+0.8
1,408,826	-		IAI47_06755	0.18	-0.5
1,408,826	-		IAI47_06755	0.18	-0.4
1,408,826	-		IAI47_06755	0.18	-1.0
1,408,826	-		IAI47_06755	0.18	+0.5
1,408,826	-		IAI47_06755	0.18	-1.6
1,408,853	-		IAI47_06755	0.20	-0.2
1,408,859	+		IAI47_06755	0.20	+0.7
1,408,859	+		IAI47_06755	0.20	-0.5
1,408,859	+		IAI47_06755	0.20	+0.6
1,408,860	-		IAI47_06755	0.20	+0.2
1,408,860	-		IAI47_06755	0.20	-2.1
1,408,931	+		IAI47_06755	0.24	+2.6
1,408,994	+		IAI47_06755	0.28	+0.5
1,408,994	+		IAI47_06755	0.28	-1.2
1,408,994	+		IAI47_06755	0.28	+1.2
1,408,995	-		IAI47_06755	0.28	-1.6
1,408,995	-		IAI47_06755	0.28	-0.8
1,409,085	+		IAI47_06755	0.33	-0.4
1,409,086	-		IAI47_06755	0.33	+1.8
1,409,189	+		IAI47_06755	0.39	-0.8
1,409,189	+		IAI47_06755	0.39	-0.9
1,409,190	-		IAI47_06755	0.39	+0.2
1,409,190	-		IAI47_06755	0.39	+0.7
1,409,190	-		IAI47_06755	0.39	-1.3
1,409,190	-		IAI47_06755	0.39	+0.1
1,409,190	-		IAI47_06755	0.39	+1.1
1,409,190	-		IAI47_06755	0.39	-1.1
1,409,224	-		IAI47_06755	0.41	-0.8
1,409,408	+		IAI47_06755	0.52	+0.2
1,409,408	+		IAI47_06755	0.52	+4.1
1,409,409	-		IAI47_06755	0.52	-0.6
1,409,528	+		IAI47_06755	0.59	-0.2
1,409,546	+		IAI47_06755	0.60	+0.6
1,409,546	+		IAI47_06755	0.60	-0.6
1,409,546	+		IAI47_06755	0.60	+1.5
1,409,546	+		IAI47_06755	0.60	-1.1
1,409,546	+		IAI47_06755	0.60	+1.2
1,409,546	+		IAI47_06755	0.60	+0.6
1,409,546	+		IAI47_06755	0.60	-0.4
1,409,546	+		IAI47_06755	0.60	-0.3
1,409,547	-		IAI47_06755	0.60	+0.5
1,409,547	-		IAI47_06755	0.60	+0.5
1,409,547	-		IAI47_06755	0.60	+1.6
1,409,547	-		IAI47_06755	0.60	+1.2
1,409,547	-		IAI47_06755	0.60	-1.2
1,409,547	-		IAI47_06755	0.60	-1.2
1,409,547	-		IAI47_06755	0.60	-0.8
1,409,547	-		IAI47_06755	0.60	+0.2
1,409,551	+		IAI47_06755	0.61	+0.8
1,409,551	+		IAI47_06755	0.61	+0.2
1,409,552	-		IAI47_06755	0.61	-1.5
1,409,552	-		IAI47_06755	0.61	-1.3
1,409,552	-		IAI47_06755	0.61	-1.0
1,409,552	-		IAI47_06755	0.61	-1.1
1,409,552	-		IAI47_06755	0.61	-0.8
1,409,552	-		IAI47_06755	0.61	-0.2
1,409,552	-		IAI47_06755	0.61	+0.7
1,409,567	+		IAI47_06755	0.62	+0.8
1,409,568	-		IAI47_06755	0.62	+0.2
1,409,591	-		IAI47_06755	0.63	+1.6
1,409,591	-		IAI47_06755	0.63	-0.6
1,409,591	-		IAI47_06755	0.63	-0.2
1,409,653	+		IAI47_06755	0.67	-0.5
1,409,654	-		IAI47_06755	0.67	-0.0
1,409,683	+		IAI47_06755	0.68	-0.8
1,409,683	+		IAI47_06755	0.68	+0.0
1,409,684	-		IAI47_06755	0.68	-0.2
1,409,684	-		IAI47_06755	0.68	-2.1
1,409,684	-		IAI47_06755	0.68	-0.3
1,409,697	-		IAI47_06755	0.69	-2.6
1,409,697	-		IAI47_06755	0.69	-1.1
1,409,747	+		IAI47_06755	0.72	-0.5
1,409,748	-		IAI47_06755	0.72	-2.2
1,409,748	-		IAI47_06755	0.72	-1.1
1,409,748	-		IAI47_06755	0.72	-1.1
1,409,748	-		IAI47_06755	0.72	+0.2
1,409,807	+		IAI47_06755	0.76	+0.2
1,409,807	+		IAI47_06755	0.76	-0.5
1,409,807	+		IAI47_06755	0.76	+0.2
1,409,807	+		IAI47_06755	0.76	-0.5
1,409,807	+		IAI47_06755	0.76	-0.8
1,409,807	+		IAI47_06755	0.76	-0.8
1,409,808	-		IAI47_06755	0.76	-0.1
1,409,808	-		IAI47_06755	0.76	+0.0
1,409,808	-		IAI47_06755	0.76	-0.8
1,409,808	-		IAI47_06755	0.76	+0.6
1,409,808	-		IAI47_06755	0.76	-3.1
1,409,908	+		IAI47_06755	0.82	-2.5
1,409,908	+		IAI47_06755	0.82	-1.8
1,409,912	+		IAI47_06755	0.82	+0.6
1,409,913	-		IAI47_06755	0.82	-0.1
1,409,913	-		IAI47_06755	0.82	+0.2
1,409,913	-		IAI47_06755	0.82	+0.2
1,409,913	-		IAI47_06755	0.82	-0.6
1,409,992	+		IAI47_06755	0.87	-0.2
1,409,993	-		IAI47_06755	0.87	-0.0
1,409,993	-		IAI47_06755	0.87	-0.8
1,409,993	-		IAI47_06755	0.87	+0.7
1,410,002	+		IAI47_06755	0.87	-0.1
1,410,002	+		IAI47_06755	0.87	-0.1
1,410,002	+		IAI47_06755	0.87	-0.5
1,410,002	+		IAI47_06755	0.87	+1.5
1,410,003	-		IAI47_06755	0.87	-1.0
1,410,003	-		IAI47_06755	0.87	+1.2
1,410,008	+		IAI47_06755	0.88	+1.0
1,410,009	-		IAI47_06755	0.88	-0.8
1,410,009	-		IAI47_06755	0.88	+0.7
1,410,069	+				-0.1
1,410,069	+				+0.1
1,410,070	-				+0.2
1,410,107	+				-0.8
1,410,107	+				-0.6
1,410,141	+				+0.5
1,410,141	+				-0.5
1,410,142	-				-0.8
1,410,142	-				+0.4
1,410,176	-				+0.5
1,410,176	-				+0.6
1,410,182	+				-0.3
1,410,183	-				+0.7
1,410,183	-				+0.3
1,410,184	+				+0.6
1,410,184	+				+0.8
1,410,184	+				+1.6
1,410,184	+				-1.3
1,410,184	+				+0.5
1,410,184	+				-0.7
1,410,184	+				+1.0
1,410,184	+				-0.2
1,410,185	-				+1.5
1,410,185	-				+0.1
1,410,185	-				+0.3
1,410,185	-				+0.7
1,410,185	-				-1.3
1,410,185	-				+0.8
1,410,185	-				-0.2
1,410,185	-				+0.1
1,410,185	-				+2.3
1,410,185	-				+0.0
1,410,185	-				+1.1
1,410,185	-				-1.0
1,410,185	-				-0.2
1,410,185	-				+0.3
1,410,185	-				-0.9
1,410,185	-				-2.1
1,410,198	-				+0.3
1,410,198	-				+0.3
1,410,266	+				+1.8
1,410,290	+				+1.4
1,410,290	+				-1.6
1,410,290	+				+0.4
1,410,290	+				-0.2
1,410,290	+				-0.6
1,410,290	+				+1.8
1,410,291	-				+0.5
1,410,291	-				+0.9
1,410,291	-				-0.7
1,410,291	-				+0.5
1,410,372	+				+0.3
1,410,381	+				+0.3
1,410,382	-				+1.6
1,410,417	-				-0.7
1,410,436	+				+2.1
1,410,437	-				+0.3
1,410,451	+				+0.9
1,410,452	-				+1.4
1,410,452	-				+1.0
1,410,489	+				+0.8
1,410,490	-				+0.6
1,410,498	+				-1.6
1,410,498	+				-0.3
1,410,498	+				+0.3
1,410,498	+				+0.4
1,410,499	-				+2.1
1,410,569	+				+1.0
1,410,584	+		IAI47_06760	0.11	-1.0
1,410,594	-		IAI47_06760	0.12	+0.5
1,410,594	-		IAI47_06760	0.12	+0.3
1,410,594	-		IAI47_06760	0.12	+0.1
1,410,700	-		IAI47_06760	0.24	+0.8
1,410,762	+		IAI47_06760	0.31	-1.7
1,410,762	+		IAI47_06760	0.31	-1.3
1,410,762	+		IAI47_06760	0.31	-1.1
1,410,762	+		IAI47_06760	0.31	+0.3
1,410,762	+		IAI47_06760	0.31	+0.5
1,410,763	-		IAI47_06760	0.31	-0.2
1,410,763	-		IAI47_06760	0.31	-2.6
1,410,803	+		IAI47_06760	0.35	-0.3
1,410,804	-		IAI47_06760	0.35	+0.8
1,410,828	+		IAI47_06760	0.38	-0.7
1,410,828	+		IAI47_06760	0.38	-0.3
1,410,828	+		IAI47_06760	0.38	+0.2
1,410,828	+		IAI47_06760	0.38	-0.0
1,410,828	+		IAI47_06760	0.38	+1.3
1,410,828	+		IAI47_06760	0.38	+1.3
1,410,828	+		IAI47_06760	0.38	-1.0
1,410,828	+		IAI47_06760	0.38	-0.7
1,410,828	+		IAI47_06760	0.38	+1.1
1,410,829	-		IAI47_06760	0.38	-0.3
1,410,829	-		IAI47_06760	0.38	+1.5
1,410,901	-		IAI47_06760	0.46	-1.1
1,410,940	+		IAI47_06760	0.51	+0.8
1,410,940	+		IAI47_06760	0.51	-0.5
1,410,940	+		IAI47_06760	0.51	-0.6
1,410,941	-		IAI47_06760	0.51	-0.0
1,410,973	+		IAI47_06760	0.54	+1.3
1,411,002	+		IAI47_06760	0.58	+0.3
1,411,002	+		IAI47_06760	0.58	-0.1
1,411,002	+		IAI47_06760	0.58	-0.7
1,411,002	+		IAI47_06760	0.58	-0.3
1,411,003	-		IAI47_06760	0.58	-1.1
1,411,003	-		IAI47_06760	0.58	-0.7
1,411,003	-		IAI47_06760	0.58	+0.8
1,411,006	+		IAI47_06760	0.58	-0.7
1,411,125	+		IAI47_06760	0.71	-0.1