Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03715 and IAI47_03720 are separated by 181 nucleotides IAI47_03720 and IAI47_03725 are separated by 279 nucleotides
IAI47_03715: IAI47_03715 - LysR family transcriptional regulator ArgP, at 775,357 to 776,262
_03715
IAI47_03720: IAI47_03720 - ribose-5-phosphate isomerase RpiA, at 776,444 to 777,103
_03720
IAI47_03725: IAI47_03725 - phosphoglycerate dehydrogenase, at 777,383 to 778,621
_03725
Position (kb) 776
777
778 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.501 kb on + strand, within IAI47_03715 at 775.502 kb on - strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.549 kb on - strand, within IAI47_03715 at 775.549 kb on - strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.828 kb on - strand, within IAI47_03715 at 776.066 kb on - strand, within IAI47_03715 at 776.066 kb on - strand, within IAI47_03715 at 776.175 kb on + strand at 776.175 kb on + strand at 776.176 kb on - strand at 776.176 kb on - strand at 776.176 kb on - strand at 776.264 kb on - strand at 776.264 kb on - strand at 776.264 kb on - strand at 776.266 kb on + strand at 776.266 kb on + strand at 776.267 kb on - strand at 776.267 kb on - strand at 776.267 kb on - strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.296 kb on - strand at 776.296 kb on - strand at 776.311 kb on + strand at 776.311 kb on + strand at 776.312 kb on - strand at 776.312 kb on - strand at 776.356 kb on + strand at 776.357 kb on + strand at 776.357 kb on + strand at 776.401 kb on + strand at 776.401 kb on + strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.403 kb on + strand at 776.403 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.434 kb on + strand at 776.434 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 777.091 kb on + strand at 777.092 kb on - strand at 777.132 kb on - strand at 777.132 kb on - strand at 777.181 kb on + strand at 777.181 kb on + strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.300 kb on + strand at 777.345 kb on + strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.372 kb on - strand at 777.372 kb on - strand at 777.393 kb on + strand at 777.393 kb on + strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.477 kb on - strand at 777.477 kb on - strand at 777.477 kb on - strand at 777.479 kb on - strand at 777.479 kb on - strand at 777.523 kb on - strand, within IAI47_03725 at 777.555 kb on + strand, within IAI47_03725 at 777.808 kb on - strand, within IAI47_03725 at 777.847 kb on + strand, within IAI47_03725 at 777.857 kb on + strand, within IAI47_03725 at 777.908 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 775,460 + IAI47_03715 0.11 -1.7 775,460 + IAI47_03715 0.11 -2.0 775,460 + IAI47_03715 0.11 +0.3 775,460 + IAI47_03715 0.11 -2.4 775,460 + IAI47_03715 0.11 -1.3 775,461 - IAI47_03715 0.11 -1.3 775,461 - IAI47_03715 0.11 -1.9 775,461 - IAI47_03715 0.11 -0.9 775,461 - IAI47_03715 0.11 -1.7 775,478 + IAI47_03715 0.13 -0.3 775,478 + IAI47_03715 0.13 -2.0 775,478 + IAI47_03715 0.13 -1.7 775,478 + IAI47_03715 0.13 -0.7 775,478 + IAI47_03715 0.13 -3.0 775,479 - IAI47_03715 0.13 -1.3 775,479 - IAI47_03715 0.13 -3.8 775,479 - IAI47_03715 0.13 -2.0 775,479 - IAI47_03715 0.13 -0.3 775,479 - IAI47_03715 0.13 -2.5 775,479 - IAI47_03715 0.13 -1.0 775,479 - IAI47_03715 0.13 +0.9 775,501 + IAI47_03715 0.16 -0.4 775,502 - IAI47_03715 0.16 +1.3 775,548 + IAI47_03715 0.21 -1.4 775,548 + IAI47_03715 0.21 -0.1 775,548 + IAI47_03715 0.21 -2.7 775,549 - IAI47_03715 0.21 -1.9 775,549 - IAI47_03715 0.21 -2.4 775,665 + IAI47_03715 0.34 -2.4 775,665 + IAI47_03715 0.34 +1.4 775,665 + IAI47_03715 0.34 -1.0 775,665 + IAI47_03715 0.34 -1.8 775,665 + IAI47_03715 0.34 -2.5 775,665 + IAI47_03715 0.34 -0.1 775,665 + IAI47_03715 0.34 -3.0 775,666 - IAI47_03715 0.34 -3.3 775,666 - IAI47_03715 0.34 -2.0 775,666 - IAI47_03715 0.34 -2.5 775,666 - IAI47_03715 0.34 -0.7 775,666 - IAI47_03715 0.34 -2.5 775,666 - IAI47_03715 0.34 -0.4 775,666 - IAI47_03715 0.34 -0.3 775,827 + IAI47_03715 0.52 -0.3 775,827 + IAI47_03715 0.52 -1.7 775,827 + IAI47_03715 0.52 +0.3 775,828 - IAI47_03715 0.52 -1.8 776,066 - IAI47_03715 0.78 -2.0 776,066 - IAI47_03715 0.78 +0.3 776,175 + -0.7 776,175 + -1.0 776,176 - -2.5 776,176 - -1.2 776,176 - +0.3 776,264 - -1.9 776,264 - -1.0 776,264 - +1.3 776,266 + -0.3 776,266 + -0.9 776,267 - -2.0 776,267 - +0.9 776,267 - +2.3 776,295 + -2.0 776,295 + -2.3 776,295 + -1.3 776,295 + +0.2 776,295 + +0.3 776,296 - +0.3 776,296 - -1.3 776,311 + +0.3 776,311 + -0.9 776,312 - -0.0 776,312 - -0.6 776,356 + -0.3 776,357 + -3.3 776,357 + -0.7 776,401 + -0.4 776,401 + -0.6 776,402 - -0.2 776,402 - -1.4 776,402 - +0.2 776,403 + -1.5 776,403 + -2.3 776,406 + -0.9 776,406 + -1.8 776,406 + -0.5 776,406 + -0.4 776,434 + +0.3 776,434 + -0.1 776,440 + +0.3 776,440 + -0.2 776,440 + -1.0 776,440 + -0.6 776,440 + -1.4 777,091 + -0.1 777,092 - -1.3 777,132 - -2.3 777,132 - +1.9 777,181 + +0.6 777,181 + -0.2 777,182 - -1.3 777,182 - -0.7 777,182 - +0.7 777,182 - -0.7 777,182 - -0.5 777,182 - -2.3 777,182 - -1.5 777,182 - -0.3 777,190 + -0.3 777,190 + +2.6 777,190 + -1.3 777,190 + -0.3 777,191 - -1.9 777,191 - -0.2 777,191 - -0.7 777,255 + +0.1 777,255 + +0.3 777,255 + +0.9 777,256 - -1.2 777,256 - -1.5 777,256 - -1.1 777,256 - -2.9 777,256 - +0.0 777,256 - +0.9 777,256 - -0.1 777,256 - -0.4 777,256 - +0.3 777,300 + -0.7 777,345 + +0.3 777,346 - -3.2 777,346 - -3.7 777,346 - -3.9 777,346 - -4.6 777,346 - -3.2 777,346 - -2.7 777,346 - -5.8 777,346 - -4.2 777,350 + +0.3 777,350 + +1.2 777,350 + +0.3 777,350 + -0.6 777,351 - -4.2 777,351 - -2.7 777,351 - -3.0 777,351 - -2.7 777,351 - -0.7 777,372 - -3.0 777,372 - -2.0 777,393 + -3.0 777,393 + -3.3 777,394 - -2.5 777,394 - -1.3 777,394 - -3.0 777,394 - -1.7 777,394 - -4.6 777,394 - -4.0 777,394 - -3.6 777,410 - -2.5 777,410 - -1.3 777,410 - -2.7 777,415 + +0.3 777,415 + -4.0 777,415 + -2.7 777,415 + -3.6 777,415 + -3.6 777,415 + -1.3 777,416 - -2.7 777,416 - -2.7 777,416 - -4.0 777,416 - -3.0 777,476 + -1.7 777,476 + -2.9 777,476 + -1.3 777,476 + -2.3 777,476 + -2.7 777,477 - -4.3 777,477 - -0.7 777,477 - -2.7 777,479 - -3.3 777,479 - -3.2 777,523 - IAI47_03725 0.11 -3.3 777,555 + IAI47_03725 0.14 -5.1 777,808 - IAI47_03725 0.34 -2.3 777,847 + IAI47_03725 0.37 -3.3 777,857 + IAI47_03725 0.38 -2.7 777,908 + IAI47_03725 0.42 -4.9 777,920 + IAI47_03725 0.43 -4.2 777,920 + IAI47_03725 0.43 -2.5 777,921 - IAI47_03725 0.43 -2.9 777,921 - IAI47_03725 0.43 -2.7 777,921 - IAI47_03725 0.43 -4.0 777,964 - IAI47_03725 0.47 +0.3 777,964 - IAI47_03725 0.47 -3.9 778,039 + IAI47_03725 0.53 -2.0 778,039 + IAI47_03725 0.53 -2.0 778,040 - IAI47_03725 0.53 -3.9 778,040 - IAI47_03725 0.53 -1.7
Or see this region's nucleotide sequence