Strain Fitness in Pantoea sp. MT58 around IAI47_16935

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
3,594,621	+		IAI47_16925	0.75	+0.3
3,594,621	+		IAI47_16925	0.75	+0.6
3,594,622	-		IAI47_16925	0.75	-0.6
3,594,636	+		IAI47_16925	0.76	+0.0
3,594,636	+		IAI47_16925	0.76	+1.4
3,594,636	+		IAI47_16925	0.76	+0.2
3,594,636	+		IAI47_16925	0.76	+1.2
3,594,636	+		IAI47_16925	0.76	-1.0
3,594,636	+		IAI47_16925	0.76	+0.7
3,594,637	-		IAI47_16925	0.76	+0.2
3,594,726	+		IAI47_16925	0.80	+1.0
3,594,726	+		IAI47_16925	0.80	-0.9
3,594,726	+		IAI47_16925	0.80	-0.2
3,594,726	+		IAI47_16925	0.80	-1.1
3,594,726	+		IAI47_16925	0.80	+0.4
3,594,727	-		IAI47_16925	0.80	+0.0
3,594,727	-		IAI47_16925	0.80	-1.1
3,594,727	-		IAI47_16925	0.80	+1.0
3,594,727	-		IAI47_16925	0.80	+0.6
3,594,729	+		IAI47_16925	0.80	-0.1
3,594,729	+		IAI47_16925	0.80	-0.8
3,594,729	+		IAI47_16925	0.80	+1.8
3,594,729	+		IAI47_16925	0.80	+0.0
3,594,730	-		IAI47_16925	0.80	+0.0
3,594,730	-		IAI47_16925	0.80	-0.6
3,594,730	-		IAI47_16925	0.80	+3.0
3,594,730	-		IAI47_16925	0.80	-0.6
3,594,730	-		IAI47_16925	0.80	-0.7
3,594,730	-		IAI47_16925	0.80	-0.7
3,594,774	+		IAI47_16925	0.82	+0.1
3,594,801	+		IAI47_16925	0.84	-1.6
3,594,891	+		IAI47_16925	0.88	+1.4
3,594,891	+		IAI47_16925	0.88	-0.1
3,594,891	+		IAI47_16925	0.88	+0.4
3,594,891	+		IAI47_16925	0.88	-0.4
3,594,891	+		IAI47_16925	0.88	-1.3
3,594,891	+		IAI47_16925	0.88	+0.8
3,594,892	-		IAI47_16925	0.88	+1.9
3,594,892	-		IAI47_16925	0.88	+0.4
3,594,892	-		IAI47_16925	0.88	+0.4
3,594,892	-		IAI47_16925	0.88	+0.2
3,594,897	+		IAI47_16925	0.88	+2.0
3,594,898	-		IAI47_16925	0.88	+0.8
3,594,898	-		IAI47_16925	0.88	+3.2
3,594,898	-		IAI47_16925	0.88	+0.7
3,594,898	-		IAI47_16925	0.88	+0.1
3,594,898	-		IAI47_16925	0.88	+1.7
3,594,898	-		IAI47_16925	0.88	-1.6
3,594,898	-		IAI47_16925	0.88	+1.9
3,594,913	-		IAI47_16925	0.89	+0.4
3,594,913	-		IAI47_16925	0.89	+0.0
3,594,913	-		IAI47_16925	0.89	-0.6
3,594,913	-		IAI47_16925	0.89	-0.2
3,594,915	+		IAI47_16925	0.89	+1.7
3,594,915	+		IAI47_16925	0.89	+0.4
3,594,915	+		IAI47_16925	0.89	+0.9
3,594,916	-		IAI47_16925	0.89	+2.3
3,594,923	+		IAI47_16925	0.89	-0.4
3,594,923	+		IAI47_16925	0.89	+0.2
3,594,945	+				+0.8
3,594,945	+				+0.0
3,594,946	-				+0.3
3,594,978	-				+0.9
3,594,978	-				+0.3
3,594,978	-				+1.0
3,594,992	+				-1.6
3,594,993	-				+1.2
3,595,056	+				-0.6
3,595,057	-				-0.0
3,595,156	+				-0.3
3,595,156	+				+0.4
3,595,156	+				-1.6
3,595,156	+				+0.4
3,595,157	-				-0.1
3,595,157	-				-1.6
3,595,166	+				-0.1
3,595,167	-				-0.6
3,595,167	-				+0.2
3,595,167	-				-0.6
3,595,167	-				+2.0
3,595,169	+				+1.0
3,595,169	+				-0.3
3,595,169	+				-0.2
3,595,169	+				-0.4
3,595,169	+				-1.1
3,595,169	+				+0.6
3,595,169	+				-0.3
3,595,169	+				+0.7
3,595,169	+				-1.3
3,595,169	+				-0.3
3,595,169	+				+0.6
3,595,170	-				-0.4
3,595,170	-				-1.3
3,595,170	-				+0.4
3,595,170	-				+0.4
3,595,170	-				+1.1
3,595,170	-				+0.0
3,595,170	-				+0.8
3,595,170	-				+0.1
3,595,170	-				-0.1
3,595,170	-				-0.0
3,595,170	-				+1.2
3,595,180	+				-0.0
3,595,181	-				+1.0
3,595,183	+				+0.8
3,595,183	+				+0.7
3,595,183	+				+0.2
3,595,183	+				-2.4
3,595,183	+				+0.8
3,595,183	+				+0.2
3,595,184	-				+0.4
3,595,184	-				-1.1
3,595,184	-				+1.4
3,595,184	-				-1.1
3,595,184	-				-0.6
3,595,184	-				+0.4
3,595,184	-				-0.6
3,595,184	-				-0.9
3,595,184	-				+0.6
3,595,186	+				-0.4
3,595,186	+				-1.6
3,595,186	+				+0.4
3,595,187	-				-0.1
3,595,187	-				-1.6
3,595,187	-				+0.1
3,595,250	+		IAI47_16930	0.21	+1.0
3,595,250	+		IAI47_16930	0.21	-1.1
3,595,250	+		IAI47_16930	0.21	+3.1
3,595,251	-		IAI47_16930	0.22	+1.3
3,595,251	-		IAI47_16930	0.22	+0.8
3,595,251	-		IAI47_16930	0.22	+1.4
3,595,291	+		IAI47_16930	0.30	+0.1
3,595,291	+		IAI47_16930	0.30	-0.3
3,595,292	-		IAI47_16930	0.30	+1.0
3,595,292	-		IAI47_16930	0.30	+0.4
3,595,292	-		IAI47_16930	0.30	+0.3
3,595,333	+		IAI47_16930	0.39	+0.3
3,595,450	+		IAI47_16930	0.64	-0.1
3,595,450	+		IAI47_16930	0.64	+0.7
3,595,450	+		IAI47_16930	0.64	+0.6
3,595,450	+		IAI47_16930	0.64	+0.2
3,595,451	-		IAI47_16930	0.65	+0.0
3,595,451	-		IAI47_16930	0.65	+0.2
3,595,451	-		IAI47_16930	0.65	-0.1
3,595,451	-		IAI47_16930	0.65	-1.6
3,595,451	-		IAI47_16930	0.65	-0.4
3,595,451	-		IAI47_16930	0.65	+2.9
3,595,451	-		IAI47_16930	0.65	-0.4
3,595,514	+		IAI47_16930	0.78	-0.3
3,595,514	+		IAI47_16930	0.78	-0.2
3,595,515	-		IAI47_16930	0.78	-0.9
3,595,524	+		IAI47_16930	0.80	+0.9
3,595,525	-		IAI47_16930	0.80	-0.6
3,595,525	-		IAI47_16930	0.80	+1.4
3,595,525	-		IAI47_16930	0.80	-0.8
3,595,589	-				-0.1
3,595,589	-				+0.9
3,595,597	+				-1.1
3,595,597	+				-0.3
3,595,597	+				+0.1
3,595,598	-				-0.4
3,595,598	-				-0.0
3,595,598	-				-0.6
3,595,598	-				+0.4
3,595,609	-				-0.5
3,595,867	+		IAI47_16935	0.41	-0.7
3,595,876	+		IAI47_16935	0.42	+0.4
3,595,876	+		IAI47_16935	0.42	-0.1
3,595,877	-		IAI47_16935	0.42	-1.1
3,595,877	-		IAI47_16935	0.42	-0.0
3,595,877	-		IAI47_16935	0.42	-1.6
3,595,877	-		IAI47_16935	0.42	-0.7
3,595,878	+		IAI47_16935	0.43	+0.4
3,595,878	+		IAI47_16935	0.43	+2.8
3,595,881	-		IAI47_16935	0.43	-0.2
3,595,881	-		IAI47_16935	0.43	-0.7
3,595,941	-		IAI47_16935	0.53	-1.1
3,595,946	+		IAI47_16935	0.53	-2.7
3,595,946	+		IAI47_16935	0.53	-1.9
3,595,946	+		IAI47_16935	0.53	-1.0
3,595,946	+		IAI47_16935	0.53	+0.6
3,595,947	-		IAI47_16935	0.53	+0.4
3,595,947	-		IAI47_16935	0.53	-1.1
3,595,980	+		IAI47_16935	0.59	+0.2
3,595,980	+		IAI47_16935	0.59	-0.8
3,595,981	-		IAI47_16935	0.59	-0.8
3,595,981	-		IAI47_16935	0.59	+0.9
3,595,981	-		IAI47_16935	0.59	-0.8
3,596,020	+		IAI47_16935	0.65	+0.9
3,596,020	+		IAI47_16935	0.65	-0.6
3,596,020	+		IAI47_16935	0.65	+1.4
3,596,184	-				+2.6
3,596,207	+				+0.0
3,596,207	+				-1.7
3,596,228	+				+0.4
3,596,228	+				+0.8
3,596,228	+				+0.4
3,596,228	+				-0.4
3,596,257	+				+2.3
3,596,258	-				-0.1
3,596,269	+				-0.6
3,596,270	-				+1.7
3,596,270	-				-1.1
3,596,271	+				+1.0
3,596,271	+				-0.8
3,596,271	+				-0.2
3,596,271	+				-0.1
3,596,271	+				+0.2
3,596,271	+				-0.6
3,596,271	+				-0.8
3,596,271	+				+0.4
3,596,271	+				-0.8
3,596,271	+				+1.7
3,596,272	-				+0.1
3,596,272	-				+1.4
3,596,272	-				+0.3
3,596,272	-				+1.7
3,596,272	-				-0.2
3,596,272	-				+1.0
3,596,272	-				+0.4
3,596,272	-				+1.2
3,596,272	-				+0.6
3,596,272	-				+0.3
3,596,272	-				-0.1
3,596,277	-				+1.3
3,596,283	+				+0.4
3,596,284	-				+1.7
3,596,284	-				-1.9
3,596,333	+				-0.7
3,596,333	+				+0.6
3,596,334	-				-1.4
3,596,334	-				+1.4
3,596,334	-				-0.9
3,596,334	-				+1.0
3,596,334	-				-0.7
3,596,334	-				+1.2
3,596,334	-				+1.2
3,596,334	-				-0.6
3,596,411	-				+2.6
3,596,460	+		IAI47_16940	0.14	-0.6
3,596,461	-		IAI47_16940	0.14	-0.0
3,596,461	-		IAI47_16940	0.14	-0.2
3,596,461	-		IAI47_16940	0.14	+1.6
3,596,461	-		IAI47_16940	0.14	+1.5
3,596,461	-		IAI47_16940	0.14	+0.4
3,596,462	+		IAI47_16940	0.14	+1.2
3,596,462	+		IAI47_16940	0.14	-0.1
3,596,463	-		IAI47_16940	0.14	-0.4
3,596,507	+		IAI47_16940	0.23	+0.2
3,596,516	+		IAI47_16940	0.25	-1.4
3,596,654	+		IAI47_16940	0.51	+0.4
3,596,655	-		IAI47_16940	0.51	-1.1
3,596,655	-		IAI47_16940	0.51	-0.2
3,596,807	+		IAI47_16940	0.80	+0.4
3,596,807	+		IAI47_16940	0.80	-0.1
3,596,808	-		IAI47_16940	0.80	+0.4
3,596,808	-		IAI47_16940	0.80	+0.3
3,596,821	+		IAI47_16940	0.83	+1.0
3,596,821	+		IAI47_16940	0.83	-0.6
3,596,821	+		IAI47_16940	0.83	-1.1
3,596,822	-		IAI47_16940	0.83	+1.0
3,596,831	+		IAI47_16940	0.85	+0.1
3,596,864	-				+0.9
3,596,874	-				-4.3
3,596,992	+		IAI47_16945	0.11	-0.4
3,596,992	+		IAI47_16945	0.11	+0.0
3,596,993	-		IAI47_16945	0.11	-1.0
3,596,993	-		IAI47_16945	0.11	-2.6
3,597,115	+		IAI47_16945	0.40	+0.1
3,597,116	-		IAI47_16945	0.40	+0.3
3,597,130	-		IAI47_16945	0.43	+1.1
3,597,144	-		IAI47_16945	0.46	+1.1
3,597,144	-		IAI47_16945	0.46	-0.5