Strain Fitness in Pantoea sp. MT58 around IAI47_16300

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
3,454,510	+		IAI47_16290	0.81	-0.4
3,454,510	+		IAI47_16290	0.81	+0.4
3,454,510	+		IAI47_16290	0.81	-1.2
3,454,510	+		IAI47_16290	0.81	-0.1
3,454,623	+				-0.3
3,454,624	-				-1.3
3,454,624	-				-1.2
3,454,729	+				-1.9
3,454,897	+		IAI47_16295	0.23	-1.2
3,454,898	-		IAI47_16295	0.23	+0.1
3,454,898	-		IAI47_16295	0.23	+0.1
3,454,952	+		IAI47_16295	0.30	-0.4
3,454,952	+		IAI47_16295	0.30	-1.6
3,454,952	+		IAI47_16295	0.30	+0.1
3,454,953	-		IAI47_16295	0.30	+1.6
3,454,953	-		IAI47_16295	0.30	-0.9
3,455,018	-		IAI47_16295	0.39	+0.4
3,455,032	+		IAI47_16295	0.40	-1.3
3,455,032	+		IAI47_16295	0.40	+0.1
3,455,033	-		IAI47_16295	0.41	+0.4
3,455,033	-		IAI47_16295	0.41	+0.4
3,455,050	-		IAI47_16295	0.43	-2.0
3,455,050	-		IAI47_16295	0.43	+0.4
3,455,050	-		IAI47_16295	0.43	+0.8
3,455,056	-				-0.9
3,455,056	-		IAI47_16295	0.43	-0.6
3,455,056	-		IAI47_16295	0.43	+0.8
3,455,080	+		IAI47_16295	0.46	-0.2
3,455,081	-		IAI47_16295	0.47	-1.5
3,455,090	-		IAI47_16295	0.48	-1.0
3,455,205	+		IAI47_16295	0.62	-0.2
3,455,315	+		IAI47_16295	0.76	+0.1
3,455,315	+		IAI47_16295	0.76	+0.5
3,455,315	+		IAI47_16295	0.76	-0.2
3,455,364	+		IAI47_16295	0.82	-0.5
3,455,364	+		IAI47_16295	0.82	-0.6
3,455,365	-		IAI47_16295	0.82	-0.7
3,455,365	-		IAI47_16295	0.82	-0.4
3,455,490	-				+0.2
3,455,490	-				+1.8
3,455,532	+				+0.5
3,455,532	+				-0.7
3,455,533	-				+0.8
3,455,535	+				-0.5
3,455,535	+				-0.3
3,455,535	+				+0.2
3,455,535	+				-0.8
3,455,536	-				+0.2
3,455,536	-				-1.3
3,455,536	-				+0.4
3,455,536	-				+0.4
3,455,549	+				+1.7
3,455,549	+				+0.8
3,455,550	-				-1.7
3,455,550	-				-1.1
3,455,550	-				-0.2
3,455,742	+		IAI47_16300	0.34	+0.8
3,455,742	+		IAI47_16300	0.34	-0.2
3,455,742	+		IAI47_16300	0.34	-1.6
3,455,742	+		IAI47_16300	0.34	-0.3
3,455,742	+		IAI47_16300	0.34	-0.2
3,455,742	+		IAI47_16300	0.34	-1.4
3,455,743	-		IAI47_16300	0.34	+1.0
3,455,743	-		IAI47_16300	0.34	-0.3
3,455,853	+		IAI47_16300	0.50	+0.9
3,455,853	+		IAI47_16300	0.50	-0.4
3,455,853	+		IAI47_16300	0.50	+1.4
3,455,853	+		IAI47_16300	0.50	+1.3
3,455,853	+		IAI47_16300	0.50	-0.7
3,455,853	+		IAI47_16300	0.50	-0.6
3,455,853	+		IAI47_16300	0.50	+0.4
3,455,853	+		IAI47_16300	0.50	+0.4
3,455,854	-		IAI47_16300	0.50	+2.1
3,455,854	-		IAI47_16300	0.50	-0.9
3,455,854	-		IAI47_16300	0.50	+0.4
3,455,854	-		IAI47_16300	0.50	-0.8
3,455,854	-		IAI47_16300	0.50	-0.8
3,455,854	-		IAI47_16300	0.50	-0.6
3,455,854	-		IAI47_16300	0.50	+0.6
3,455,860	+		IAI47_16300	0.51	+0.0
3,456,056	+		IAI47_16300	0.79	+0.4
3,456,056	+		IAI47_16300	0.79	-1.6
3,456,056	+		IAI47_16300	0.79	+0.1
3,456,056	+		IAI47_16300	0.79	+2.8
3,456,057	-		IAI47_16300	0.79	+0.2
3,456,057	-		IAI47_16300	0.79	+1.6
3,456,114	+		IAI47_16300	0.87	-0.4
3,456,114	+		IAI47_16300	0.87	+1.2
3,456,114	+		IAI47_16300	0.87	+0.1
3,456,114	+		IAI47_16300	0.87	+0.8
3,456,114	+		IAI47_16300	0.87	-2.4
3,456,114	+		IAI47_16300	0.87	+1.0
3,456,114	+		IAI47_16300	0.87	-0.6
3,456,114	+		IAI47_16300	0.87	+3.0
3,456,114	+		IAI47_16300	0.87	+0.6
3,456,114	+		IAI47_16300	0.87	+2.0
3,456,114	+		IAI47_16300	0.87	-0.6
3,456,114	+		IAI47_16300	0.87	+3.0
3,456,114	+		IAI47_16300	0.87	+0.3
3,456,114	+		IAI47_16300	0.87	-0.3
3,456,114	+		IAI47_16300	0.87	+0.3
3,456,115	-		IAI47_16300	0.87	-0.2
3,456,115	-		IAI47_16300	0.87	+1.0
3,456,115	-		IAI47_16300	0.87	+2.6
3,456,115	-		IAI47_16300	0.87	-2.7
3,456,115	-		IAI47_16300	0.87	+0.8
3,456,327	+		IAI47_16305	0.11	+1.3
3,456,327	+		IAI47_16305	0.11	+0.4
3,456,327	+		IAI47_16305	0.11	+0.2
3,456,327	+		IAI47_16305	0.11	+1.0
3,456,327	+		IAI47_16305	0.11	-0.7
3,456,327	+		IAI47_16305	0.11	-0.7
3,456,328	-		IAI47_16305	0.12	-0.6
3,456,328	-		IAI47_16305	0.12	-0.6
3,456,328	-		IAI47_16305	0.12	+1.0
3,456,329	+		IAI47_16305	0.12	+2.2
3,456,330	-		IAI47_16305	0.12	-1.2
3,456,330	-		IAI47_16305	0.12	+0.4
3,456,330	-		IAI47_16305	0.12	-0.9
3,456,330	-		IAI47_16305	0.12	-1.2
3,456,416	+		IAI47_16305	0.20	-1.2
3,456,416	+		IAI47_16305	0.20	-1.2
3,456,445	+		IAI47_16305	0.23	-0.2
3,456,446	-		IAI47_16305	0.23	-0.2
3,456,446	-		IAI47_16305	0.23	+0.4
3,456,446	-		IAI47_16305	0.23	+0.4
3,456,446	-		IAI47_16305	0.23	-0.9
3,456,458	+		IAI47_16305	0.24	-0.8
3,456,458	+		IAI47_16305	0.24	-0.3
3,456,459	-		IAI47_16305	0.24	+0.4
3,456,481	+		IAI47_16305	0.27	+0.6
3,456,481	+		IAI47_16305	0.27	-1.8
3,456,481	+		IAI47_16305	0.27	-0.4
3,456,482	-		IAI47_16305	0.27	+0.1
3,456,482	-		IAI47_16305	0.27	+0.8
3,456,482	-		IAI47_16305	0.27	+0.1
3,456,527	-		IAI47_16305	0.31	-0.8
3,456,527	-		IAI47_16305	0.31	-0.6
3,456,527	-		IAI47_16305	0.31	+0.6
3,456,560	+		IAI47_16305	0.34	-0.4
3,456,560	+		IAI47_16305	0.34	-0.8
3,456,560	+		IAI47_16305	0.34	-0.8
3,456,560	+		IAI47_16305	0.34	+0.2
3,456,561	-		IAI47_16305	0.35	+0.7
3,456,686	+		IAI47_16305	0.47	+1.0
3,456,686	+		IAI47_16305	0.47	-0.9
3,456,686	+		IAI47_16305	0.47	+0.7
3,456,686	+		IAI47_16305	0.47	+0.9
3,456,686	+		IAI47_16305	0.47	-1.2
3,456,686	+		IAI47_16305	0.47	+1.4
3,456,686	+		IAI47_16305	0.47	-0.8
3,456,686	+		IAI47_16305	0.47	+0.4
3,456,686	+		IAI47_16305	0.47	+0.0
3,456,686	+		IAI47_16305	0.47	+0.7
3,456,687	-		IAI47_16305	0.47	-0.2
3,456,687	-		IAI47_16305	0.47	-0.4
3,456,687	-		IAI47_16305	0.47	+0.4
3,456,687	-		IAI47_16305	0.47	+0.4
3,456,687	-		IAI47_16305	0.47	+0.3
3,456,687	-		IAI47_16305	0.47	-1.2
3,456,687	-		IAI47_16305	0.47	-0.6
3,456,687	-		IAI47_16305	0.47	+0.6
3,456,687	-		IAI47_16305	0.47	-0.2
3,456,687	-		IAI47_16305	0.47	-0.6
3,456,687	-		IAI47_16305	0.47	-0.6
3,456,687	-		IAI47_16305	0.47	-0.3
3,456,733	+		IAI47_16305	0.51	+1.4
3,456,733	+		IAI47_16305	0.51	-0.5
3,456,734	-		IAI47_16305	0.52	+0.4
3,456,734	-		IAI47_16305	0.52	+1.0
3,456,734	-		IAI47_16305	0.52	-0.6
3,456,785	+		IAI47_16305	0.57	-1.6
3,456,785	+		IAI47_16305	0.57	-0.8
3,456,785	+		IAI47_16305	0.57	+0.3
3,456,785	+		IAI47_16305	0.57	-2.4
3,456,786	-		IAI47_16305	0.57	+0.4
3,456,786	-		IAI47_16305	0.57	+0.7
3,456,786	-		IAI47_16305	0.57	-1.3
3,456,804	+		IAI47_16305	0.58	+1.4
3,456,804	+		IAI47_16305	0.58	+0.4
3,456,804	+		IAI47_16305	0.58	-0.8
3,456,804	+		IAI47_16305	0.58	-2.2
3,456,805	-		IAI47_16305	0.59	-1.9
3,456,809	+		IAI47_16305	0.59	-1.9
3,456,809	+		IAI47_16305	0.59	+0.2
3,456,809	+		IAI47_16305	0.59	-0.2
3,456,809	+		IAI47_16305	0.59	+0.0
3,456,809	+		IAI47_16305	0.59	-0.2
3,456,809	+		IAI47_16305	0.59	-0.8
3,456,809	+		IAI47_16305	0.59	-0.8
3,456,809	+		IAI47_16305	0.59	-0.1
3,456,810	-		IAI47_16305	0.59	-1.7
3,456,810	-		IAI47_16305	0.59	+0.2
3,456,810	-		IAI47_16305	0.59	+1.0
3,456,864	+		IAI47_16305	0.64	+0.8
3,456,965	+		IAI47_16305	0.74	-1.2
3,456,965	+		IAI47_16305	0.74	+0.0
3,456,965	+		IAI47_16305	0.74	+0.2
3,456,965	+		IAI47_16305	0.74	-0.8
3,456,965	+		IAI47_16305	0.74	-0.8
3,456,965	+		IAI47_16305	0.74	+0.2
3,456,965	+		IAI47_16305	0.74	+0.6
3,456,965	+		IAI47_16305	0.74	+0.4
3,456,965	+		IAI47_16305	0.74	-0.8
3,456,965	+		IAI47_16305	0.74	+1.2
3,456,965	+		IAI47_16305	0.74	-1.4
3,456,965	+		IAI47_16305	0.74	-1.3
3,456,965	+		IAI47_16305	0.74	+0.5
3,456,965	+		IAI47_16305	0.74	-0.1
3,456,965	+		IAI47_16305	0.74	+1.8
3,456,965	+		IAI47_16305	0.74	-1.2
3,456,965	+		IAI47_16305	0.74	+0.1
3,456,965	+		IAI47_16305	0.74	+1.2
3,456,966	-		IAI47_16305	0.74	+0.8
3,456,966	-		IAI47_16305	0.74	-0.6
3,456,966	-		IAI47_16305	0.74	-1.0
3,456,966	-		IAI47_16305	0.74	+0.3
3,456,966	-		IAI47_16305	0.74	-0.2
3,456,966	-		IAI47_16305	0.74	-0.1
3,456,966	-		IAI47_16305	0.74	-1.0
3,456,966	-		IAI47_16305	0.74	+0.8
3,456,966	-		IAI47_16305	0.74	-0.6
3,456,966	-		IAI47_16305	0.74	+0.8
3,456,966	-		IAI47_16305	0.74	-0.8
3,456,966	-		IAI47_16305	0.74	-0.2
3,456,966	-		IAI47_16305	0.74	-1.4
3,456,969	+		IAI47_16305	0.75	-0.4
3,456,969	+		IAI47_16305	0.75	-0.3
3,456,969	+		IAI47_16305	0.75	-1.1
3,456,969	+		IAI47_16305	0.75	-0.6
3,456,969	+		IAI47_16305	0.75	+1.0
3,456,969	+		IAI47_16305	0.75	-1.4
3,456,969	+		IAI47_16305	0.75	-1.2
3,456,969	+		IAI47_16305	0.75	+0.4
3,456,969	+		IAI47_16305	0.75	-1.5
3,456,969	+		IAI47_16305	0.75	+0.2
3,456,969	+		IAI47_16305	0.75	-0.2
3,456,969	+		IAI47_16305	0.75	-1.0
3,456,969	+		IAI47_16305	0.75	-0.6
3,456,970	-		IAI47_16305	0.75	-0.6
3,456,970	-		IAI47_16305	0.75	-0.7
3,456,970	-		IAI47_16305	0.75	-1.2
3,456,970	-		IAI47_16305	0.75	+0.5
3,456,970	-		IAI47_16305	0.75	-0.9
3,456,970	-		IAI47_16305	0.75	-0.5
3,456,970	-		IAI47_16305	0.75	-0.7
3,456,970	-		IAI47_16305	0.75	+0.7
3,456,970	-		IAI47_16305	0.75	-1.4
3,456,970	-		IAI47_16305	0.75	-0.2
3,456,970	-		IAI47_16305	0.75	-0.2
3,456,970	-		IAI47_16305	0.75	+2.0
3,456,970	-		IAI47_16305	0.75	-0.1
3,456,970	-		IAI47_16305	0.75	-0.7
3,456,970	-		IAI47_16305	0.75	+3.0
3,456,973	+		IAI47_16305	0.75	+0.8
3,456,973	+		IAI47_16305	0.75	-0.7
3,456,973	+		IAI47_16305	0.75	+0.4
3,456,973	+		IAI47_16305	0.75	+0.6
3,456,973	+		IAI47_16305	0.75	+0.1
3,456,973	+		IAI47_16305	0.75	+0.8
3,456,973	+		IAI47_16305	0.75	-0.2
3,456,973	+		IAI47_16305	0.75	+3.0
3,456,973	+		IAI47_16305	0.75	+0.8
3,456,973	+		IAI47_16305	0.75	+1.4
3,456,973	+		IAI47_16305	0.75	-0.9
3,456,974	-		IAI47_16305	0.75	+0.4
3,456,974	-		IAI47_16305	0.75	+1.4
3,456,974	-		IAI47_16305	0.75	-1.6
3,456,974	-		IAI47_16305	0.75	+0.9
3,456,974	-		IAI47_16305	0.75	+1.7
3,456,974	-		IAI47_16305	0.75	-0.9
3,456,974	-		IAI47_16305	0.75	+1.3
3,456,974	-		IAI47_16305	0.75	+0.0
3,456,974	-		IAI47_16305	0.75	+0.1
3,456,974	-		IAI47_16305	0.75	-0.1
3,456,974	-		IAI47_16305	0.75	+4.1
3,456,974	-		IAI47_16305	0.75	+1.4
3,457,002	+		IAI47_16305	0.78	-0.6
3,457,002	+		IAI47_16305	0.78	+0.7
3,457,002	+		IAI47_16305	0.78	+0.3
3,457,002	+		IAI47_16305	0.78	-1.6
3,457,002	+		IAI47_16305	0.78	+0.7
3,457,002	+		IAI47_16305	0.78	+0.7
3,457,002	+		IAI47_16305	0.78	+1.6
3,457,002	+		IAI47_16305	0.78	-2.6
3,457,003	-		IAI47_16305	0.78	+0.7
3,457,026	+		IAI47_16305	0.80	-1.4
3,457,026	+		IAI47_16305	0.80	-0.7
3,457,026	+		IAI47_16305	0.80	+0.2
3,457,027	-		IAI47_16305	0.80	-2.2
3,457,027	-		IAI47_16305	0.80	+1.3