Strain Fitness in Pantoea sp. MT58 around IAI47_15230

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
3,211,448	+		IAI47_15225	0.14	-1.7
3,211,449	-		IAI47_15225	0.14	-1.1
3,211,449	-		IAI47_15225	0.14	-0.9
3,211,475	+		IAI47_15225	0.16	+0.9
3,211,476	-		IAI47_15225	0.16	-0.2
3,211,538	+		IAI47_15225	0.21	+0.4
3,211,538	+		IAI47_15225	0.21	-0.0
3,211,538	+		IAI47_15225	0.21	-1.1
3,211,538	+		IAI47_15225	0.21	-1.0
3,211,538	+		IAI47_15225	0.21	-0.6
3,211,538	+		IAI47_15225	0.21	+1.2
3,211,539	-		IAI47_15225	0.22	+0.0
3,211,539	-		IAI47_15225	0.22	+1.1
3,211,539	-		IAI47_15225	0.22	+0.4
3,211,539	-		IAI47_15225	0.22	-0.6
3,211,539	-		IAI47_15225	0.22	-0.3
3,211,545	-		IAI47_15225	0.22	-0.0
3,211,570	+		IAI47_15225	0.24	-0.1
3,211,570	+		IAI47_15225	0.24	+0.0
3,211,571	-		IAI47_15225	0.24	+0.4
3,211,571	-		IAI47_15225	0.24	-0.0
3,211,601	+		IAI47_15225	0.27	-0.3
3,211,601	+		IAI47_15225	0.27	+1.4
3,211,602	-		IAI47_15225	0.27	+0.7
3,211,661	+		IAI47_15225	0.32	-0.1
3,211,662	-		IAI47_15225	0.32	+0.0
3,211,662	-		IAI47_15225	0.32	+0.3
3,211,670	+		IAI47_15225	0.33	+0.9
3,211,670	+		IAI47_15225	0.33	+2.0
3,211,670	+		IAI47_15225	0.33	+0.4
3,211,670	+		IAI47_15225	0.33	+0.0
3,211,670	+		IAI47_15225	0.33	+0.4
3,211,670	+		IAI47_15225	0.33	-1.2
3,211,670	+		IAI47_15225	0.33	+1.2
3,211,671	-		IAI47_15225	0.33	-1.0
3,211,671	-		IAI47_15225	0.33	+1.2
3,211,671	-		IAI47_15225	0.33	-0.0
3,211,671	-		IAI47_15225	0.33	+1.2
3,211,671	-		IAI47_15225	0.33	+0.2
3,211,714	+		IAI47_15225	0.37	-0.1
3,211,715	-		IAI47_15225	0.37	+0.8
3,211,715	-		IAI47_15225	0.37	+0.3
3,211,880	+		IAI47_15225	0.51	+0.4
3,211,880	+		IAI47_15225	0.51	-0.2
3,211,881	-		IAI47_15225	0.51	-0.2
3,211,881	-		IAI47_15225	0.51	+0.4
3,211,901	+		IAI47_15225	0.53	+0.9
3,211,902	-		IAI47_15225	0.53	-1.1
3,212,005	+		IAI47_15225	0.62	-0.1
3,212,005	+		IAI47_15225	0.62	+0.4
3,212,005	+		IAI47_15225	0.62	+0.3
3,212,005	+		IAI47_15225	0.62	+1.0
3,212,005	+		IAI47_15225	0.62	+0.1
3,212,027	+		IAI47_15225	0.64	+0.1
3,212,028	-		IAI47_15225	0.64	-0.3
3,212,078	+		IAI47_15225	0.68	-0.1
3,212,078	+		IAI47_15225	0.68	-1.3
3,212,078	+		IAI47_15225	0.68	-0.6
3,212,078	+		IAI47_15225	0.68	+2.0
3,212,079	-		IAI47_15225	0.68	-0.4
3,212,079	-		IAI47_15225	0.68	+0.2
3,212,079	-		IAI47_15225	0.68	-2.3
3,212,079	-		IAI47_15225	0.68	+0.6
3,212,150	+		IAI47_15225	0.74	+0.9
3,212,150	+		IAI47_15225	0.74	+1.6
3,212,150	+		IAI47_15225	0.74	-0.6
3,212,150	+		IAI47_15225	0.74	+0.0
3,212,151	-		IAI47_15225	0.74	+1.3
3,212,151	-		IAI47_15225	0.74	+1.2
3,212,151	-		IAI47_15225	0.74	-0.3
3,212,151	-		IAI47_15225	0.74	+0.3
3,212,151	-		IAI47_15225	0.74	+0.6
3,212,151	-		IAI47_15225	0.74	+2.1
3,212,151	-		IAI47_15225	0.74	-1.6
3,212,172	-		IAI47_15225	0.76	-0.0
3,212,172	-		IAI47_15225	0.76	-0.8
3,212,172	-		IAI47_15225	0.76	+0.4
3,212,188	+		IAI47_15225	0.77	-2.0
3,212,221	+		IAI47_15225	0.80	+1.8
3,212,222	-		IAI47_15225	0.80	-0.4
3,212,222	-		IAI47_15225	0.80	-1.0
3,212,246	+		IAI47_15225	0.82	+0.7
3,212,246	+		IAI47_15225	0.82	-1.4
3,212,253	+		IAI47_15225	0.83	-0.2
3,212,254	-		IAI47_15225	0.83	-0.9
3,212,264	+		IAI47_15225	0.84	-0.6
3,212,265	-		IAI47_15225	0.84	+1.1
3,212,265	-		IAI47_15225	0.84	-0.2
3,212,265	-		IAI47_15225	0.84	+0.1
3,212,374	+				+0.4
3,212,415	+				+0.4
3,212,416	-				+0.4
3,212,416	-				+1.3
3,212,416	-				+0.9
3,212,416	-				-0.4
3,212,416	-				-1.4
3,212,416	-				-1.4
3,212,416	-				-0.7
3,212,416	-				-1.2
3,212,416	-				+1.4
3,212,436	+				-0.8
3,212,436	+				+1.2
3,212,436	+				-2.1
3,212,436	+				-0.2
3,212,437	-				+0.1
3,212,437	-				-0.8
3,212,437	-				+3.2
3,212,437	-				-0.5
3,212,437	-				+0.1
3,212,459	+				-0.4
3,212,459	+				-1.9
3,212,460	-				+0.1
3,212,460	-				-1.0
3,212,550	+		IAI47_15230	0.15	+0.4
3,212,550	+		IAI47_15230	0.15	-0.7
3,212,568	+		IAI47_15230	0.17	+1.1
3,212,569	-		IAI47_15230	0.17	-0.1
3,212,569	-		IAI47_15230	0.17	+1.4
3,212,569	-		IAI47_15230	0.17	-0.2
3,212,705	+		IAI47_15230	0.35	+0.3
3,212,749	+		IAI47_15230	0.41	-0.5
3,212,749	+		IAI47_15230	0.41	-0.3
3,212,749	+		IAI47_15230	0.41	+1.4
3,212,750	-		IAI47_15230	0.41	+1.7
3,212,750	-		IAI47_15230	0.41	+1.3
3,212,750	-		IAI47_15230	0.41	+1.0
3,212,773	-		IAI47_15230	0.44	+0.1
3,212,795	-		IAI47_15230	0.47	+0.0
3,212,861	-		IAI47_15230	0.55	+0.7
3,212,917	+		IAI47_15230	0.62	+0.6
3,212,917	+		IAI47_15230	0.62	+1.7
3,212,917	+		IAI47_15230	0.62	+1.0
3,212,917	+		IAI47_15230	0.62	+0.4
3,212,917	+		IAI47_15230	0.62	-0.1
3,212,917	+		IAI47_15230	0.62	-0.4
3,212,917	+		IAI47_15230	0.62	+0.4
3,212,917	+		IAI47_15230	0.62	+0.4
3,212,917	+		IAI47_15230	0.62	+1.4
3,212,917	+		IAI47_15230	0.62	+0.9
3,212,918	-		IAI47_15230	0.63	+4.6
3,212,918	-		IAI47_15230	0.63	+0.7
3,212,963	+		IAI47_15230	0.68	+0.9
3,212,963	+		IAI47_15230	0.68	-1.0
3,212,964	-		IAI47_15230	0.69	+0.4
3,212,995	+		IAI47_15230	0.73	-1.6
3,212,995	+		IAI47_15230	0.73	+0.3
3,212,995	+		IAI47_15230	0.73	+1.3
3,212,995	+		IAI47_15230	0.73	-0.8
3,212,996	-		IAI47_15230	0.73	+2.0
3,212,996	-		IAI47_15230	0.73	+0.7
3,212,996	-		IAI47_15230	0.73	-0.7
3,212,996	-		IAI47_15230	0.73	+1.7
3,213,009	+		IAI47_15230	0.74	+0.4
3,213,043	+		IAI47_15230	0.79	-0.8
3,213,043	+		IAI47_15230	0.79	+1.4
3,213,043	+		IAI47_15230	0.79	+1.6
3,213,043	+		IAI47_15230	0.79	-1.1
3,213,044	-		IAI47_15230	0.79	+0.3
3,213,064	-		IAI47_15230	0.82	+0.2
3,213,064	-		IAI47_15230	0.82	-0.8
3,213,155	-				+0.5
3,213,202	+				+1.2
3,213,218	-				+0.6
3,213,320	-		IAI47_15235	0.31	-0.3
3,213,320	-		IAI47_15235	0.31	-2.4
3,213,320	-		IAI47_15235	0.31	+0.5
3,213,349	+		IAI47_15235	0.40	-0.8
3,213,350	-		IAI47_15235	0.40	+0.1
3,213,350	-		IAI47_15235	0.40	+0.2
3,213,376	+		IAI47_15235	0.48	+0.5
3,213,377	-		IAI47_15235	0.48	+1.5
3,213,377	-		IAI47_15235	0.48	+0.2
3,213,509	+		IAI47_15235	0.87	-0.1
3,213,530	+				-0.5
3,213,530	+				+0.1
3,213,530	+				-0.8
3,213,530	+				+0.3
3,213,530	+				+0.1
3,213,531	-				+0.9
3,213,531	-				+1.0
3,213,566	-				-0.3
3,213,572	+				-1.1
3,213,573	-				+1.8
3,213,580	+				-0.4
3,213,581	-				+0.0
3,213,628	+		IAI47_15240	0.16	-0.9
3,213,629	-		IAI47_15240	0.16	+0.9
3,213,720	+		IAI47_15240	0.35	+0.5
3,213,720	+		IAI47_15240	0.35	+0.5
3,213,720	+		IAI47_15240	0.35	+0.8
3,213,721	-		IAI47_15240	0.35	+0.5
3,213,721	-		IAI47_15240	0.35	-0.9
3,213,721	-		IAI47_15240	0.35	+1.0
3,213,727	+		IAI47_15240	0.36	+0.7
3,213,727	+		IAI47_15240	0.36	-0.3
3,213,727	+		IAI47_15240	0.36	+1.0
3,213,728	-		IAI47_15240	0.36	+0.1
3,213,760	-		IAI47_15240	0.43	-0.7
3,213,760	-		IAI47_15240	0.43	+0.1
3,213,760	-		IAI47_15240	0.43	-0.7
3,213,801	-		IAI47_15240	0.51	+1.3
3,213,801	-		IAI47_15240	0.51	-0.5
3,213,801	-		IAI47_15240	0.51	+0.1
3,213,914	+		IAI47_15240	0.74	-0.4
3,214,024	+				-0.4
3,214,024	+				-1.1
3,214,024	+				+0.2
3,214,025	-				-0.3
3,214,025	-				+0.0
3,214,035	-				-1.7
3,214,035	-				-1.4
3,214,043	-				+1.6
3,214,047	+				+1.3
3,214,047	+				+1.5
3,214,048	-				+0.0
3,214,083	+				+0.1
3,214,083	+				+0.7
3,214,156	+				+0.5
3,214,156	+				+0.7
3,214,156	+				+0.1
3,214,166	+				+0.9
3,214,166	+				+5.4
3,214,166	+				-0.9
3,214,166	+				-1.3
3,214,166	+				+0.9
3,214,166	+				-0.5
3,214,167	-				-1.5
3,214,167	-				-0.5
3,214,167	-				-1.9
3,214,167	-				+1.4
3,214,167	-				-0.6
3,214,167	-				+1.5
3,214,196	-		IAI47_15245	0.12	+1.0