Strain Fitness in Pantoea sp. MT58 around IAI47_11215

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
2,370,472	+				+0.3
2,370,473	-				-0.7
2,370,546	+				-1.5
2,370,546	+				-0.7
2,370,547	-				+0.3
2,370,547	-				+1.0
2,370,547	-				+0.8
2,370,557	+				-0.4
2,370,558	-				-0.4
2,370,565	+				+0.3
2,370,565	+				-0.7
2,370,565	+				+0.0
2,370,565	+				-0.0
2,370,566	-				-0.5
2,370,566	-				+1.0
2,370,566	-				+1.3
2,370,575	+				-0.7
2,370,576	-				+1.3
2,370,629	+				+2.9
2,370,672	+				+0.1
2,370,672	+				+0.9
2,370,673	-				+1.7
2,370,687	+				+0.3
2,370,687	+				+2.0
2,370,687	+				+0.9
2,370,687	+				+0.8
2,370,687	+				+0.9
2,370,688	-				+0.3
2,370,688	-				+1.9
2,370,688	-				+0.7
2,370,697	+				-0.7
2,370,697	+				+0.3
2,370,697	+				+1.0
2,370,697	+				+1.5
2,370,698	-				+3.0
2,370,698	-				+1.0
2,370,698	-				+1.0
2,370,698	-				+2.5
2,370,698	-				+2.7
2,370,715	+				+0.7
2,370,715	+				+2.6
2,370,716	-				+1.6
2,370,774	+		IAI47_11210	0.12	+0.8
2,370,774	+		IAI47_11210	0.12	+0.8
2,370,774	+		IAI47_11210	0.12	+1.3
2,370,775	-		IAI47_11210	0.12	+1.3
2,370,775	-		IAI47_11210	0.12	+2.8
2,370,775	-		IAI47_11210	0.12	-0.3
2,370,775	-		IAI47_11210	0.12	+0.7
2,370,838	-		IAI47_11210	0.21	+2.5
2,370,905	+		IAI47_11210	0.31	+1.9
2,370,905	+		IAI47_11210	0.31	+1.2
2,370,905	+		IAI47_11210	0.31	+0.8
2,370,906	-		IAI47_11210	0.31	+1.7
2,370,906	-		IAI47_11210	0.31	+0.9
2,370,906	-		IAI47_11210	0.31	+1.1
2,370,906	-		IAI47_11210	0.31	+1.8
2,370,906	-		IAI47_11210	0.31	+2.0
2,370,906	-		IAI47_11210	0.31	+1.4
2,370,920	+		IAI47_11210	0.33	+1.3
2,370,921	-		IAI47_11210	0.33	+1.3
2,371,052	+		IAI47_11210	0.52	+2.1
2,371,052	+		IAI47_11210	0.52	+1.7
2,371,052	+		IAI47_11210	0.52	+1.0
2,371,052	+		IAI47_11210	0.52	+1.2
2,371,053	-		IAI47_11210	0.52	+1.4
2,371,088	+		IAI47_11210	0.57	+1.8
2,371,088	+		IAI47_11210	0.57	+0.9
2,371,089	-		IAI47_11210	0.57	+1.3
2,371,149	+		IAI47_11210	0.66	+0.9
2,371,149	+		IAI47_11210	0.66	+1.3
2,371,150	-		IAI47_11210	0.66	+1.1
2,371,150	-		IAI47_11210	0.66	+1.0
2,371,237	+		IAI47_11210	0.79	+1.5
2,371,237	+		IAI47_11210	0.79	+2.2
2,371,237	+		IAI47_11210	0.79	+2.2
2,371,237	+		IAI47_11210	0.79	+2.8
2,371,238	-		IAI47_11210	0.79	+1.6
2,371,238	-		IAI47_11210	0.79	+0.9
2,371,238	-		IAI47_11210	0.79	+2.1
2,371,238	-		IAI47_11210	0.79	+2.5
2,371,238	-		IAI47_11210	0.79	+1.6
2,371,248	+		IAI47_11210	0.80	+0.9
2,371,248	+		IAI47_11210	0.80	+2.2
2,371,249	-		IAI47_11210	0.80	+0.3
2,371,249	-		IAI47_11210	0.80	+1.9
2,371,249	-		IAI47_11210	0.80	+1.8
2,371,254	+		IAI47_11210	0.81	+0.3
2,371,254	+		IAI47_11210	0.81	+2.4
2,371,254	+		IAI47_11210	0.81	+0.5
2,371,254	+		IAI47_11210	0.81	+0.9
2,371,254	+		IAI47_11210	0.81	+0.6
2,371,255	-		IAI47_11210	0.81	+0.3
2,371,320	-				+1.3
2,371,356	+				+1.9
2,371,356	+				+1.5
2,371,356	+				+1.5
2,371,356	+				+1.8
2,371,357	-				+0.9
2,371,357	-				+1.2
2,371,357	-				+0.7
2,371,357	-				+2.7
2,371,366	+				+1.2
2,371,367	-				+0.9
2,371,417	+				-0.4
2,371,418	-				+2.4
2,371,549	-		IAI47_11215	0.11	+1.8
2,371,628	+		IAI47_11215	0.18	+0.5
2,371,635	+		IAI47_11215	0.19	-0.4
2,371,635	+		IAI47_11215	0.19	+0.1
2,371,635	+		IAI47_11215	0.19	+0.4
2,371,636	-		IAI47_11215	0.19	+0.1
2,371,636	-		IAI47_11215	0.19	+0.6
2,371,636	-		IAI47_11215	0.19	+1.3
2,371,705	+		IAI47_11215	0.25	+0.8
2,371,705	+		IAI47_11215	0.25	+1.1
2,371,705	+		IAI47_11215	0.25	+0.1
2,371,705	+		IAI47_11215	0.25	-0.4
2,371,705	+		IAI47_11215	0.25	+1.2
2,371,705	+		IAI47_11215	0.25	+0.8
2,371,705	+		IAI47_11215	0.25	-0.2
2,371,706	-		IAI47_11215	0.25	+2.7
2,371,706	-		IAI47_11215	0.25	+1.1
2,371,706	-		IAI47_11215	0.25	+1.8
2,371,706	-		IAI47_11215	0.25	+0.6
2,371,859	+		IAI47_11215	0.38	+1.8
2,371,859	+		IAI47_11215	0.38	+0.7
2,371,860	-		IAI47_11215	0.38	+0.7
2,372,034	+		IAI47_11215	0.54	+2.5
2,372,111	+		IAI47_11215	0.61	+1.7
2,372,112	-		IAI47_11215	0.61	+1.2
2,372,149	-		IAI47_11215	0.64	+1.0
2,372,149	-		IAI47_11215	0.64	+2.2
2,372,175	+		IAI47_11215	0.66	+0.3
2,372,183	+		IAI47_11215	0.67	+1.3
2,372,183	+		IAI47_11215	0.67	-0.4
2,372,183	+		IAI47_11215	0.67	+0.3
2,372,184	-		IAI47_11215	0.67	+0.7
2,372,184	-		IAI47_11215	0.67	+0.4
2,372,184	-		IAI47_11215	0.67	+0.7
2,372,197	+		IAI47_11215	0.68	+0.9
2,372,197	+		IAI47_11215	0.68	+0.7
2,372,197	+		IAI47_11215	0.68	+1.2
2,372,197	+		IAI47_11215	0.68	+1.3
2,372,197	+		IAI47_11215	0.68	+1.1
2,372,197	+		IAI47_11215	0.68	+1.9
2,372,198	-		IAI47_11215	0.68	+2.1
2,372,198	-		IAI47_11215	0.68	+2.0
2,372,198	-		IAI47_11215	0.68	+1.7
2,372,198	-		IAI47_11215	0.68	+2.3
2,372,198	-		IAI47_11215	0.68	+0.8
2,372,198	-		IAI47_11215	0.68	+1.2
2,372,220	+		IAI47_11215	0.70	+0.8
2,372,220	+		IAI47_11215	0.70	+0.5
2,372,220	+		IAI47_11215	0.70	+2.2
2,372,240	+		IAI47_11215	0.72	+1.6
2,372,240	+		IAI47_11215	0.72	+2.7
2,372,240	+		IAI47_11215	0.72	+0.3
2,372,240	+		IAI47_11215	0.72	+1.1
2,372,241	-		IAI47_11215	0.72	+1.7
2,372,304	+		IAI47_11215	0.77	-0.2
2,372,328	+		IAI47_11215	0.80	+1.7
2,372,329	-		IAI47_11215	0.80	+1.1
2,372,372	+		IAI47_11215	0.83	+1.0
2,372,420	-		IAI47_11215	0.88	+1.1
2,372,420	-		IAI47_11215	0.88	+0.7
2,372,430	+		IAI47_11215	0.89	-0.4
2,372,430	+		IAI47_11215	0.89	-1.0
2,372,430	+		IAI47_11215	0.89	+0.5
2,372,430	+		IAI47_11215	0.89	+0.3
2,372,430	+		IAI47_11215	0.89	+0.2
2,372,430	+		IAI47_11215	0.89	+1.2
2,372,430	+		IAI47_11215	0.89	-0.0
2,372,430	+		IAI47_11215	0.89	+0.8
2,372,430	+		IAI47_11215	0.89	+1.3
2,372,431	-		IAI47_11215	0.89	+0.7
2,372,431	-		IAI47_11215	0.89	+0.0
2,372,431	-		IAI47_11215	0.89	+1.5
2,372,431	-		IAI47_11215	0.89	+1.2
2,372,431	-		IAI47_11215	0.89	+2.9
2,372,434	+		IAI47_11215	0.89	+3.3
2,372,434	+		IAI47_11215	0.89	+0.7
2,372,435	-		IAI47_11215	0.89	+1.3
2,372,435	-		IAI47_11215	0.89	+1.7
2,372,503	+				+0.6
2,372,503	+				+1.0
2,372,504	-				+1.2
2,372,504	-				+1.9
2,372,504	-				-0.1
2,372,504	-				+2.5
2,372,524	+				+0.9
2,372,524	+				+0.6
2,372,524	+				+1.6
2,372,525	-				+1.9
2,372,593	+				+1.8
2,372,593	+				+2.3
2,372,639	+		IAI47_11220	0.11	+1.2
2,372,639	+		IAI47_11220	0.11	+1.4
2,372,639	+		IAI47_11220	0.11	+1.9
2,372,639	+		IAI47_11220	0.11	+0.6
2,372,639	+		IAI47_11220	0.11	+1.4
2,372,640	-		IAI47_11220	0.11	+0.9
2,372,732	-		IAI47_11220	0.23	-0.7
2,372,732	-		IAI47_11220	0.23	-0.3
2,372,732	-		IAI47_11220	0.23	+1.4
2,372,826	+		IAI47_11220	0.35	+0.6
2,372,827	-		IAI47_11220	0.35	-1.6
2,372,827	-		IAI47_11220	0.35	+0.3
2,372,840	+		IAI47_11220	0.37	+3.1
2,372,840	+		IAI47_11220	0.37	+3.0
2,372,840	+		IAI47_11220	0.37	+1.6
2,372,841	-		IAI47_11220	0.37	+0.6
2,372,841	-		IAI47_11220	0.37	-1.8
2,372,861	+		IAI47_11220	0.39	+2.9
2,372,874	-		IAI47_11220	0.41	+2.6
2,372,916	+		IAI47_11220	0.46	+3.7
2,372,947	+		IAI47_11220	0.50	+1.2
2,372,947	+		IAI47_11220	0.50	+2.6
2,372,948	-		IAI47_11220	0.50	-1.0
2,373,008	+		IAI47_11220	0.58	+1.8
2,373,015	-		IAI47_11220	0.59	+0.9
2,373,019	+		IAI47_11220	0.60	+2.6
2,373,020	-		IAI47_11220	0.60	+0.8
2,373,024	+		IAI47_11220	0.60	+1.7
2,373,024	+		IAI47_11220	0.60	+3.5
2,373,026	+		IAI47_11220	0.60	+2.3
2,373,026	+		IAI47_11220	0.60	+2.0
2,373,027	-		IAI47_11220	0.61	+0.1
2,373,056	-		IAI47_11220	0.64	-1.2
2,373,233	+		IAI47_11220	0.87	+1.6
2,373,233	+		IAI47_11220	0.87	+4.8
2,373,288	+				+1.7
2,373,288	+				+0.9
2,373,289	-				-0.5
2,373,346	+				-1.1
2,373,347	-				-1.2
2,373,353	+				+2.0
2,373,391	+				-0.4
2,373,392	-				+1.2
2,373,422	+				+2.1
2,373,422	+				+0.9
2,373,422	+				+1.5
2,373,423	-				+0.1
2,373,423	-				+2.3
2,373,423	-				-2.1
2,373,423	-				-0.1
2,373,449	+		IAI47_11225	0.11	-0.1
2,373,449	+		IAI47_11225	0.11	-0.3
2,373,449	+		IAI47_11225	0.11	+0.2
2,373,449	+		IAI47_11225	0.11	-0.4
2,373,449	+		IAI47_11225	0.11	-0.3
2,373,449	+		IAI47_11225	0.11	+0.4
2,373,450	-		IAI47_11225	0.11	-0.8
2,373,450	-		IAI47_11225	0.11	+0.2
2,373,457	+		IAI47_11225	0.12	+0.4
2,373,490	+		IAI47_11225	0.15	+0.9
2,373,490	+		IAI47_11225	0.15	+1.9
2,373,490	+		IAI47_11225	0.15	-0.6
2,373,491	-		IAI47_11225	0.15	+0.2
2,373,491	-		IAI47_11225	0.15	-2.6
2,373,491	-		IAI47_11225	0.15	-0.6
2,373,523	+		IAI47_11225	0.18	+0.0
2,373,524	-		IAI47_11225	0.19	-1.1