Strain Fitness in Pantoea sp. MT58 around IAI47_09200

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,937,560	-				-0.7
1,937,585	+				+1.5
1,937,585	+				-0.2
1,937,588	+				+0.6
1,937,588	+				+1.3
1,937,588	+				+1.5
1,937,591	+				+0.2
1,937,591	+				-0.1
1,937,592	-				+1.2
1,937,592	-				-0.4
1,937,592	-				-0.8
1,937,639	+				-0.7
1,937,640	-				-0.3
1,937,640	-				+0.3
1,937,702	+		IAI47_09195	0.14	+0.6
1,937,702	+		IAI47_09195	0.14	-2.3
1,937,703	-		IAI47_09195	0.14	+0.3
1,937,703	-		IAI47_09195	0.14	-0.0
1,937,721	-		IAI47_09195	0.16	-1.2
1,937,756	+		IAI47_09195	0.20	+1.1
1,937,756	+		IAI47_09195	0.20	-2.5
1,937,756	+		IAI47_09195	0.20	+0.5
1,937,792	+		IAI47_09195	0.24	-1.5
1,937,793	-		IAI47_09195	0.24	+0.3
1,938,022	-		IAI47_09195	0.49	-0.1
1,938,138	+		IAI47_09195	0.62	+0.0
1,938,153	+		IAI47_09195	0.63	-1.0
1,938,154	-		IAI47_09195	0.63	+0.1
1,938,154	-		IAI47_09195	0.63	-1.0
1,938,154	-		IAI47_09195	0.63	+0.3
1,938,303	+		IAI47_09195	0.80	-1.4
1,938,303	+		IAI47_09195	0.80	+0.3
1,938,303	+		IAI47_09195	0.80	-1.8
1,938,303	+		IAI47_09195	0.80	-1.3
1,938,303	+		IAI47_09195	0.80	-0.2
1,938,303	+		IAI47_09195	0.80	-0.6
1,938,303	+		IAI47_09195	0.80	+4.4
1,938,304	-		IAI47_09195	0.80	+0.1
1,938,304	-		IAI47_09195	0.80	+0.3
1,938,304	-		IAI47_09195	0.80	+0.0
1,938,304	-		IAI47_09195	0.80	+1.0
1,938,304	-		IAI47_09195	0.80	-0.5
1,938,304	-		IAI47_09195	0.80	-0.3
1,938,328	+		IAI47_09195	0.82	-1.0
1,938,328	+		IAI47_09195	0.82	-1.2
1,938,329	-		IAI47_09195	0.82	-0.7
1,938,339	+		IAI47_09195	0.84	-1.6
1,938,339	+		IAI47_09195	0.84	+1.1
1,938,339	+		IAI47_09195	0.84	+0.9
1,938,340	-		IAI47_09195	0.84	-1.5
1,938,340	-		IAI47_09195	0.84	-1.1
1,938,552	+				+0.5
1,938,553	-				+1.3
1,938,553	-				-0.2
1,938,568	+		IAI47_09200	0.11	+0.9
1,938,595	+		IAI47_09200	0.15	+1.0
1,938,790	+		IAI47_09200	0.46	-0.5
1,938,790	+		IAI47_09200	0.46	+1.3
1,938,790	+		IAI47_09200	0.46	-0.1
1,938,790	+		IAI47_09200	0.46	-1.1
1,938,790	+		IAI47_09200	0.46	-1.0
1,938,790	+		IAI47_09200	0.46	-1.3
1,938,790	+		IAI47_09200	0.46	-0.3
1,938,790	+		IAI47_09200	0.46	-0.4
1,938,790	+		IAI47_09200	0.46	+1.2
1,938,790	+		IAI47_09200	0.46	-1.8
1,938,791	-		IAI47_09200	0.47	-1.4
1,938,791	-		IAI47_09200	0.47	-0.3
1,938,791	-		IAI47_09200	0.47	+0.3
1,938,799	-		IAI47_09200	0.48	-2.0
1,938,799	-		IAI47_09200	0.48	-0.0
1,938,799	-		IAI47_09200	0.48	+0.7
1,938,804	+		IAI47_09200	0.49	+0.7
1,938,804	+		IAI47_09200	0.49	+0.7
1,938,849	+		IAI47_09200	0.56	-1.3
1,938,850	-		IAI47_09200	0.56	+0.7
1,938,850	-		IAI47_09200	0.56	+0.1
1,938,935	+		IAI47_09200	0.70	+2.3
1,938,936	-		IAI47_09200	0.70	-0.5
1,938,936	-		IAI47_09200	0.70	+0.3
1,938,996	+		IAI47_09200	0.80	+1.6
1,938,996	+		IAI47_09200	0.80	-0.2
1,938,997	-		IAI47_09200	0.80	+0.2
1,938,997	-		IAI47_09200	0.80	+1.7
1,938,997	-		IAI47_09200	0.80	+0.0
1,938,997	-		IAI47_09200	0.80	+1.5
1,938,997	-		IAI47_09200	0.80	+0.3
1,938,997	-		IAI47_09200	0.80	-1.7
1,938,997	-		IAI47_09200	0.80	+0.5
1,938,997	-		IAI47_09200	0.80	+2.4
1,939,120	+				+2.1
1,939,121	-				-0.1
1,939,121	-				-0.9
1,939,125	-				+1.1
1,939,125	-				+0.0
1,939,125	-				-0.5
1,939,174	+				-0.5
1,939,174	+				+0.9
1,939,175	-				+0.7
1,939,197	-				+0.3
1,939,204	-		IAI47_09205	0.11	+1.0
1,939,204	-		IAI47_09205	0.11	+1.0
1,939,204	-		IAI47_09205	0.11	-0.1
1,939,204	-		IAI47_09205	0.11	+1.0
1,939,204	-		IAI47_09205	0.11	+0.9
1,939,205	+		IAI47_09205	0.11	+1.3
1,939,206	-		IAI47_09205	0.11	-0.1
1,939,206	-		IAI47_09205	0.11	+0.1
1,939,206	-		IAI47_09205	0.11	-0.0
1,939,206	-		IAI47_09205	0.11	+0.0
1,939,236	+		IAI47_09205	0.16	-0.4
1,939,236	+		IAI47_09205	0.16	-0.5
1,939,237	-		IAI47_09205	0.16	-0.3
1,939,240	-		IAI47_09205	0.16	-0.9
1,939,240	-		IAI47_09205	0.16	+0.3
1,939,240	-		IAI47_09205	0.16	-0.1
1,939,240	-		IAI47_09205	0.16	-0.2
1,939,251	+		IAI47_09205	0.18	-0.7
1,939,252	-		IAI47_09205	0.18	-0.5
1,939,265	+		IAI47_09205	0.20	+0.5
1,939,275	+		IAI47_09205	0.22	+1.0
1,939,285	+		IAI47_09205	0.23	-0.2
1,939,285	+		IAI47_09205	0.23	+0.2
1,939,286	-		IAI47_09205	0.23	-2.0
1,939,290	+		IAI47_09205	0.24	-0.7
1,939,290	+		IAI47_09205	0.24	-2.1
1,939,290	+		IAI47_09205	0.24	+0.2
1,939,290	+		IAI47_09205	0.24	+2.6
1,939,290	+		IAI47_09205	0.24	-0.5
1,939,290	+		IAI47_09205	0.24	-0.7
1,939,291	-		IAI47_09205	0.24	+1.7
1,939,305	-		IAI47_09205	0.26	-0.4
1,939,345	-		IAI47_09205	0.32	+1.4
1,939,359	+		IAI47_09205	0.35	+0.8
1,939,359	+		IAI47_09205	0.35	-1.3
1,939,372	-		IAI47_09205	0.37	-0.7
1,939,372	-		IAI47_09205	0.37	+0.7
1,939,403	-		IAI47_09205	0.41	+0.1
1,939,407	+		IAI47_09205	0.42	-2.5
1,939,440	+		IAI47_09205	0.47	-0.7
1,939,440	+		IAI47_09205	0.47	+0.3
1,939,454	+		IAI47_09205	0.49	-0.5
1,939,454	+		IAI47_09205	0.49	-0.0
1,939,455	-		IAI47_09205	0.49	+0.8
1,939,455	-		IAI47_09205	0.49	+0.5
1,939,494	+		IAI47_09205	0.55	+3.5
1,939,506	+		IAI47_09205	0.57	+0.5
1,939,507	-		IAI47_09205	0.57	-1.7
1,939,507	-		IAI47_09205	0.57	-0.7
1,939,524	-		IAI47_09205	0.60	-0.2
1,939,524	-		IAI47_09205	0.60	+0.6
1,939,527	+		IAI47_09205	0.60	+0.7
1,939,528	-		IAI47_09205	0.61	-0.5
1,939,528	-		IAI47_09205	0.61	-1.4
1,939,544	+		IAI47_09205	0.63	-0.5
1,939,544	+		IAI47_09205	0.63	+4.3
1,939,553	+		IAI47_09205	0.65	+1.1
1,939,553	+		IAI47_09205	0.65	-0.3
1,939,554	-		IAI47_09205	0.65	-0.7
1,939,554	-		IAI47_09205	0.65	+0.5
1,939,581	+		IAI47_09205	0.69	-0.1
1,939,582	-		IAI47_09205	0.69	+2.3
1,939,605	+		IAI47_09205	0.73	-0.0
1,939,605	+		IAI47_09205	0.73	-1.1
1,939,606	-		IAI47_09205	0.73	+0.8
1,939,607	+		IAI47_09205	0.73	-0.5
1,939,608	-		IAI47_09205	0.73	-1.1
1,939,608	-		IAI47_09205	0.73	+0.3
1,939,608	-		IAI47_09205	0.73	+0.6
1,939,624	+		IAI47_09205	0.75	+0.0
1,939,624	+		IAI47_09205	0.75	-0.7
1,939,624	+		IAI47_09205	0.75	+0.3
1,939,624	+		IAI47_09205	0.75	-1.3
1,939,624	+		IAI47_09205	0.75	+0.3
1,939,625	-		IAI47_09205	0.76	+0.6
1,939,625	-		IAI47_09205	0.76	-1.0
1,939,625	-		IAI47_09205	0.76	+0.9
1,939,625	-		IAI47_09205	0.76	-0.5
1,939,680	+		IAI47_09205	0.84	-0.3
1,939,680	+		IAI47_09205	0.84	-0.8
1,939,681	-		IAI47_09205	0.84	-0.3
1,939,681	-		IAI47_09205	0.84	+0.0
1,939,681	-		IAI47_09205	0.84	-1.7
1,939,681	-		IAI47_09205	0.84	+0.3
1,939,684	+		IAI47_09205	0.85	+1.9
1,939,684	+		IAI47_09205	0.85	-0.3
1,939,684	+		IAI47_09205	0.85	-1.0
1,939,684	+		IAI47_09205	0.85	-2.3
1,939,684	+		IAI47_09205	0.85	+0.5
1,939,685	-		IAI47_09205	0.85	-1.3
1,939,685	-		IAI47_09205	0.85	+0.2
1,939,685	-		IAI47_09205	0.85	-0.0
1,939,685	-		IAI47_09205	0.85	+0.9
1,939,709	+		IAI47_09205	0.89	+0.3
1,939,709	+		IAI47_09205	0.89	+0.3
1,939,710	-		IAI47_09205	0.89	+0.6
1,939,710	-		IAI47_09205	0.89	-1.3
1,939,716	+		IAI47_09205	0.90	+0.5
1,939,717	-		IAI47_09205	0.90	-1.4
1,939,782	+				-0.1
1,939,783	-				-0.3
1,939,864	-				-1.4
1,939,864	-				-0.7
1,939,864	-				-0.1
1,939,867	-				-0.1
1,939,903	-				+0.7
1,939,907	-				-0.3
1,939,923	-				+0.9
1,939,926	-				+0.5
1,939,930	+				+1.3
1,939,931	-				+0.4
1,939,931	-				+1.8
1,939,931	-				+0.7
1,939,931	-				+0.9
1,939,967	+				-2.6
1,939,967	+				-0.0
1,939,989	-				-0.2
1,940,006	-				+2.2
1,940,012	-				+0.1
1,940,012	-				-0.0
1,940,022	+				+0.5
1,940,073	-				-0.9
1,940,085	-				+1.5
1,940,117	+				-1.3