Strain Fitness in Pantoea sp. MT58 around IAI47_08160

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,720,551	+		IAI47_08155	0.18	-0.7
1,720,551	+		IAI47_08155	0.18	-0.1
1,720,551	+		IAI47_08155	0.18	-1.5
1,720,551	+		IAI47_08155	0.18	-2.0
1,720,552	-		IAI47_08155	0.18	+0.1
1,720,552	-		IAI47_08155	0.18	+0.3
1,720,552	-		IAI47_08155	0.18	-0.7
1,720,552	-		IAI47_08155	0.18	-0.2
1,720,552	-		IAI47_08155	0.18	+0.5
1,720,607	-		IAI47_08155	0.24	-0.7
1,720,607	-		IAI47_08155	0.24	+0.6
1,720,627	+		IAI47_08155	0.26	-0.5
1,720,628	-		IAI47_08155	0.26	-0.1
1,720,654	+		IAI47_08155	0.28	-1.7
1,720,654	+		IAI47_08155	0.28	-1.3
1,720,654	+		IAI47_08155	0.28	+1.5
1,720,654	+		IAI47_08155	0.28	-1.7
1,720,691	+		IAI47_08155	0.32	+1.0
1,720,691	+		IAI47_08155	0.32	+0.3
1,720,691	+		IAI47_08155	0.32	-0.5
1,720,691	+		IAI47_08155	0.32	+1.9
1,720,691	+		IAI47_08155	0.32	+1.6
1,720,691	+		IAI47_08155	0.32	-1.3
1,720,691	+		IAI47_08155	0.32	-0.3
1,720,691	+		IAI47_08155	0.32	-0.3
1,720,691	+		IAI47_08155	0.32	+0.9
1,720,692	-		IAI47_08155	0.32	-0.2
1,720,692	-		IAI47_08155	0.32	-1.2
1,720,692	-		IAI47_08155	0.32	-1.4
1,720,692	-		IAI47_08155	0.32	-0.8
1,720,692	-		IAI47_08155	0.32	-1.7
1,720,692	-		IAI47_08155	0.32	-1.1
1,720,692	-		IAI47_08155	0.32	+0.3
1,720,692	-		IAI47_08155	0.32	-1.5
1,720,817	-		IAI47_08155	0.45	+1.9
1,720,869	+		IAI47_08155	0.51	+0.7
1,720,869	+		IAI47_08155	0.51	-0.8
1,721,058	+		IAI47_08155	0.70	+0.7
1,721,058	+		IAI47_08155	0.70	-0.5
1,721,058	+		IAI47_08155	0.70	-0.8
1,721,059	-		IAI47_08155	0.70	+0.9
1,721,059	-		IAI47_08155	0.70	-0.8
1,721,059	-		IAI47_08155	0.70	-0.2
1,721,059	-		IAI47_08155	0.70	-1.0
1,721,059	-		IAI47_08155	0.70	-1.0
1,721,059	-		IAI47_08155	0.70	-0.1
1,721,059	-		IAI47_08155	0.70	-0.4
1,721,059	-		IAI47_08155	0.70	+0.2
1,721,059	-		IAI47_08155	0.70	-2.3
1,721,112	+		IAI47_08155	0.76	+0.3
1,721,151	-		IAI47_08155	0.80	-2.0
1,721,175	+		IAI47_08155	0.82	-0.3
1,721,175	+		IAI47_08155	0.82	+1.1
1,721,176	-		IAI47_08155	0.82	-0.4
1,721,176	-		IAI47_08155	0.82	+0.5
1,721,178	+		IAI47_08155	0.83	-0.1
1,721,179	-		IAI47_08155	0.83	+0.3
1,721,190	+		IAI47_08155	0.84	+0.4
1,721,344	+				-0.3
1,721,385	+				-0.3
1,721,386	-				+0.1
1,721,386	-				+0.1
1,721,400	-				+0.3
1,721,400	-				-1.0
1,721,400	-				-1.5
1,721,452	+				-3.3
1,721,452	+				-1.9
1,721,452	+				-2.0
1,721,452	+				-2.1
1,721,452	+				-0.7
1,721,452	+				+0.3
1,721,453	-				+0.3
1,721,453	-				+0.1
1,721,453	-				-0.7
1,721,453	-				-0.2
1,721,474	-				+1.3
1,721,483	+				+1.9
1,721,503	+				+1.3
1,721,503	+				+0.7
1,721,503	+				+0.7
1,721,504	-				-0.7
1,721,548	+				+0.9
1,721,549	-				-0.1
1,721,549	-				+1.2
1,721,640	-		IAI47_08160	0.21	+0.1
1,721,648	+		IAI47_08160	0.22	+1.3
1,721,649	-		IAI47_08160	0.22	+0.6
1,721,665	+		IAI47_08160	0.24	+0.7
1,721,682	+		IAI47_08160	0.26	+2.9
1,721,682	+		IAI47_08160	0.26	+1.7
1,721,683	-		IAI47_08160	0.27	-0.5
1,721,683	-		IAI47_08160	0.27	+1.8
1,721,691	+		IAI47_08160	0.28	+1.0
1,721,691	+		IAI47_08160	0.28	+1.1
1,721,692	-		IAI47_08160	0.28	+0.6
1,721,699	-		IAI47_08160	0.29	+0.4
1,721,699	-		IAI47_08160	0.29	+0.8
1,721,712	+		IAI47_08160	0.31	+1.7
1,721,713	-		IAI47_08160	0.31	+0.9
1,721,713	-		IAI47_08160	0.31	+1.0
1,721,713	-		IAI47_08160	0.31	-0.7
1,721,775	+		IAI47_08160	0.39	+1.2
1,721,881	+		IAI47_08160	0.54	+2.0
1,722,088	+		IAI47_08160	0.83	+3.3
1,722,088	+		IAI47_08160	0.83	+0.8
1,722,088	+		IAI47_08160	0.83	-0.0
1,722,088	+		IAI47_08160	0.83	-0.3
1,722,088	+		IAI47_08160	0.83	+2.0
1,722,088	+		IAI47_08160	0.83	+0.7
1,722,088	+		IAI47_08160	0.83	+1.0
1,722,088	+		IAI47_08160	0.83	+1.3
1,722,089	-		IAI47_08160	0.83	+1.5
1,722,089	-		IAI47_08160	0.83	+0.3
1,722,089	-		IAI47_08160	0.83	+0.6
1,722,089	-		IAI47_08160	0.83	+0.4
1,722,091	+		IAI47_08160	0.83	+0.6
1,722,091	+		IAI47_08160	0.83	+3.6
1,722,091	+		IAI47_08160	0.83	+0.8
1,722,091	+		IAI47_08160	0.83	+2.3
1,722,092	-		IAI47_08160	0.83	+0.3
1,722,092	-		IAI47_08160	0.83	+2.0
1,722,092	-		IAI47_08160	0.83	-0.3
1,722,092	-		IAI47_08160	0.83	+0.6
1,722,212	-				-2.3
1,722,217	+				+1.9
1,722,217	+				-0.5
1,722,217	+				-1.7
1,722,218	-				-1.3
1,722,218	-				-3.3
1,722,218	-				-0.7
1,722,243	+				-2.5
1,722,262	+				-4.0
1,722,292	+				-0.4
1,722,292	+				-1.0
1,722,293	-				-2.9
1,722,300	+				+0.3
1,722,305	+				-1.3
1,722,306	-				-4.0
1,722,306	-				-2.5
1,722,306	-				-3.1
1,722,312	+				-2.7
1,722,312	+				-1.7
1,722,313	+				-2.3
1,722,313	-				-2.0
1,722,313	-				-2.0
1,722,313	-				-2.9
1,722,313	-				-0.7
1,722,314	+				-0.4
1,722,314	+				-1.7
1,722,315	-		IAI47_08165	0.10	-3.0
1,722,315	-		IAI47_08165	0.10	-1.7
1,722,315	-		IAI47_08165	0.10	-2.7
1,722,315	-		IAI47_08165	0.10	-2.0
1,722,315	-		IAI47_08165	0.10	-2.0
1,722,352	+		IAI47_08165	0.17	-2.0
1,722,352	+		IAI47_08165	0.17	-2.5
1,722,352	+		IAI47_08165	0.17	-2.9
1,722,353	-		IAI47_08165	0.18	-0.7
1,722,353	-		IAI47_08165	0.18	-1.7
1,722,353	-		IAI47_08165	0.18	-2.7
1,722,355	+		IAI47_08165	0.18	-3.6
1,722,355	+		IAI47_08165	0.18	-2.0
1,722,356	-		IAI47_08165	0.18	-2.7
1,722,356	-		IAI47_08165	0.18	-3.1
1,722,356	-				-1.3
1,722,395	+		IAI47_08165	0.26	-0.7
1,722,395	+		IAI47_08165	0.26	-1.3
1,722,396	-		IAI47_08165	0.26	-2.0
1,722,396	-		IAI47_08165	0.26	-2.7
1,722,485	+		IAI47_08165	0.44	-2.0
1,722,513	-		IAI47_08165	0.49	-1.3
1,722,513	-		IAI47_08165	0.49	-1.7
1,722,513	-		IAI47_08165	0.49	-2.9
1,722,516	+		IAI47_08165	0.50	-0.3
1,722,516	+		IAI47_08165	0.50	-3.1
1,722,516	+		IAI47_08165	0.50	-3.4
1,722,516	+		IAI47_08165	0.50	-3.0
1,722,516	+		IAI47_08165	0.50	-2.5
1,722,543	+		IAI47_08165	0.55	-3.8
1,722,543	+		IAI47_08165	0.55	-0.1
1,722,544	-		IAI47_08165	0.56	-0.7
1,722,544	-		IAI47_08165	0.56	-3.4
1,722,544	-		IAI47_08165	0.56	-2.5
1,722,588	+		IAI47_08165	0.64	-3.6
1,722,589	-		IAI47_08165	0.64	+0.3
1,722,589	-		IAI47_08165	0.64	-1.3
1,722,589	-		IAI47_08165	0.64	-1.0
1,722,589	-		IAI47_08165	0.64	-2.9
1,722,589	-		IAI47_08165	0.64	-1.3
1,722,653	+		IAI47_08165	0.77	-1.3
1,722,662	+		IAI47_08165	0.79	-0.7
1,722,662	+		IAI47_08165	0.79	-2.3
1,722,663	-		IAI47_08165	0.79	-1.0
1,722,663	-		IAI47_08165	0.79	-2.6
1,722,705	-		IAI47_08165	0.88	-2.9
1,722,705	-		IAI47_08165	0.88	-0.3
1,722,707	+		IAI47_08165	0.88	+0.3
1,722,707	+		IAI47_08165	0.88	-0.3
1,722,708	-		IAI47_08165	0.88	-1.0
1,722,714	+		IAI47_08165	0.89	-2.3
1,722,714	+		IAI47_08165	0.89	-0.7
1,722,715	-		IAI47_08165	0.89	-2.0
1,722,715	-		IAI47_08165	0.89	-1.7
1,722,735	+				-1.7
1,722,735	+				-2.0
1,722,735	+				-1.3
1,722,736	-				-2.9
1,722,736	-				-0.7
1,722,736	-				-1.7
1,722,749	-				-3.3
1,722,749	-				-2.7
1,722,749	-				-3.3
1,722,749	-				-2.5
1,722,749	-				-1.8
1,722,765	+				-0.9
1,722,765	+				-1.1
1,722,766	-				-0.4
1,722,766	-				-1.3
1,722,951	+				-0.3
1,722,952	-				-0.9
1,722,952	-				+0.8
1,722,957	+				-0.2
1,722,958	-				+0.6
1,723,001	+				+0.3
1,723,001	+				+0.1
1,723,001	+				-2.0
1,723,002	-				+0.4
1,723,047	-				+0.3
1,723,072	+				-0.3
1,723,193	+		IAI47_08170	0.21	+0.3
1,723,193	+		IAI47_08170	0.21	-0.0
1,723,193	+		IAI47_08170	0.21	-1.0