Strain Fitness in Pantoea sp. MT58 around IAI47_06365

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,293,309	+				-0.6
1,293,310	-				+0.4
1,293,354	+				-0.6
1,293,354	+				-0.1
1,293,354	+				+0.4
1,293,355	-				-0.4
1,293,491	+				+0.6
1,293,492	-				+0.8
1,293,500	+				-0.7
1,293,523	+				-0.0
1,293,523	+				+0.5
1,293,523	+				-0.6
1,293,523	+				+1.1
1,293,524	-				+0.7
1,293,524	-				+0.7
1,293,524	-				+0.4
1,293,524	-				+0.1
1,293,524	-				-0.7
1,293,576	+				-2.0
1,293,582	-				+0.1
1,293,582	-				+1.4
1,293,582	-				+0.4
1,293,582	-				-2.8
1,293,582	-				-0.5
1,293,611	-				-1.6
1,293,640	-				-0.4
1,293,643	-				-1.2
1,293,661	-				-1.9
1,293,661	-				-0.2
1,293,699	+				+0.7
1,293,699	+				-0.9
1,293,699	+				-0.6
1,293,722	+				-0.7
1,293,734	+				-1.6
1,293,744	+				+0.4
1,293,744	+				+0.4
1,293,768	+				-0.8
1,293,843	+				-0.6
1,293,844	-				+0.4
1,293,854	+				-1.9
1,293,863	+				-0.6
1,293,863	+				+0.4
1,293,901	+		IAI47_06360	0.12	-1.2
1,293,901	+				+0.4
1,293,905	+		IAI47_06360	0.13	-1.2
1,293,906	-		IAI47_06360	0.13	-1.9
1,294,104	+		IAI47_06360	0.57	-1.9
1,294,194	+		IAI47_06360	0.78	-0.6
1,294,243	+		IAI47_06360	0.89	+0.4
1,294,243	+		IAI47_06360	0.89	+2.4
1,294,256	+				-0.9
1,294,259	+				-0.1
1,294,259	+				+1.1
1,294,259	+				-1.2
1,294,259	+				+0.2
1,294,259	+				+0.1
1,294,259	+				+0.7
1,294,283	+				-0.2
1,294,284	-				-1.6
1,294,290	+				-0.8
1,294,290	+				-0.6
1,294,304	+				-1.9
1,294,305	-				-2.2
1,294,314	+				-0.6
1,294,315	-				-1.2
1,294,316	+				-2.2
1,294,316	+				+0.4
1,294,422	+		IAI47_06365	0.17	+0.4
1,294,422	+		IAI47_06365	0.17	-0.6
1,294,422	+		IAI47_06365	0.17	-1.6
1,294,423	-		IAI47_06365	0.17	-0.6
1,294,423	-		IAI47_06365	0.17	+0.4
1,294,425	-		IAI47_06365	0.17	-2.6
1,294,516	-		IAI47_06365	0.31	-1.6
1,294,661	-		IAI47_06365	0.52	-2.2
1,294,662	+		IAI47_06365	0.52	-2.2
1,294,663	-		IAI47_06365	0.52	-1.2
1,294,663	-		IAI47_06365	0.52	-1.2
1,294,728	+		IAI47_06365	0.62	-2.2
1,294,728	+		IAI47_06365	0.62	-1.6
1,294,729	-		IAI47_06365	0.62	-1.2
1,294,729	-		IAI47_06365	0.62	-2.6
1,294,738	-		IAI47_06365	0.63	-1.2
1,294,774	+		IAI47_06365	0.69	-2.6
1,294,774	+		IAI47_06365	0.69	-0.6
1,294,774	+		IAI47_06365	0.69	-1.6
1,294,775	-		IAI47_06365	0.69	-1.2
1,294,782	+		IAI47_06365	0.70	-1.2
1,294,782	+		IAI47_06365	0.70	-0.6
1,294,782	+				-1.2
1,294,782	+		IAI47_06365	0.70	-1.9
1,294,782	+		IAI47_06365	0.70	-1.6
1,294,783	-		IAI47_06365	0.70	-1.9
1,294,816	-				-1.2
1,294,816	-				-0.6
1,295,031	+				-2.4
1,295,031	+				-2.6
1,295,031	+				+0.0
1,295,093	+				-2.2
1,295,093	+				-1.6
1,295,098	+				-0.6
1,295,099	-				-1.9
1,295,099	-				-2.4
1,295,099	-				-1.9
1,295,099	-				-1.6
1,295,291	-		IAI47_06370	0.11	-1.9
1,295,307	-		IAI47_06370	0.12	-0.6
1,295,318	+		IAI47_06370	0.12	-1.9
1,295,346	+		IAI47_06370	0.14	-1.2
1,295,346	+		IAI47_06370	0.14	-2.2
1,295,347	-		IAI47_06370	0.14	-2.4
1,295,351	-		IAI47_06370	0.14	+0.4
1,295,504	+				-0.6
1,295,504	+		IAI47_06370	0.23	-0.6
1,295,505	-		IAI47_06370	0.23	-1.9
1,295,537	-		IAI47_06370	0.24	-0.6
1,295,832	+		IAI47_06370	0.41	-2.6
1,295,832	+		IAI47_06370	0.41	-1.6
1,295,832	+		IAI47_06370	0.41	-0.6
1,295,897	+		IAI47_06370	0.44	-1.2
1,295,897	+		IAI47_06370	0.44	+0.4
1,295,897	+		IAI47_06370	0.44	-0.6
1,295,898	-		IAI47_06370	0.44	-0.2
1,295,906	+		IAI47_06370	0.45	-0.6
1,295,907	-		IAI47_06370	0.45	-1.2
1,295,907	-		IAI47_06370	0.45	-0.6
1,295,954	+		IAI47_06370	0.47	-3.1
1,295,982	+		IAI47_06370	0.49	-1.6