Strain Fitness in Pantoea sp. MT58 around IAI47_06285

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,277,299	+				+0.4
1,277,299	+				+0.1
1,277,300	-				+0.4
1,277,300	-				-1.0
1,277,300	-				+0.0
1,277,300	-				+2.7
1,277,321	+				-0.4
1,277,321	+				+0.1
1,277,321	+				-0.9
1,277,321	+				-0.1
1,277,322	-				+0.8
1,277,322	-				+0.8
1,277,322	-				-1.2
1,277,322	-				+0.7
1,277,377	+				+0.1
1,277,377	+				-1.6
1,277,378	-				-1.9
1,277,378	-				+0.5
1,277,378	-				+0.4
1,277,410	+				+1.0
1,277,410	+				-0.1
1,277,978	+				-0.4
1,277,978	+				+0.9
1,277,979	-				+1.0
1,277,979	-				+0.6
1,277,979	-				+0.2
1,277,998	+				-0.6
1,277,998	+				-0.9
1,277,998	+				-1.2
1,277,998	+				-0.4
1,277,998	+				-0.9
1,277,999	-				+1.3
1,277,999	-				-0.6
1,277,999	-				-1.2
1,278,003	-				+1.4
1,278,009	+				+1.1
1,278,009	+				+0.4
1,278,010	-				+0.7
1,278,056	-				+0.4
1,278,079	-				+1.6
1,278,089	+				-0.8
1,278,089	+				-0.4
1,278,089	+				-0.5
1,278,089	+				+4.4
1,278,089	+				+0.8
1,278,089	+				-0.6
1,278,090	-				-1.9
1,278,090	-				-0.7
1,278,090	-				-0.5
1,278,090	-				-0.7
1,278,091	+				+0.4
1,278,091	+				+0.4
1,278,092	-				+0.1
1,278,092	-				+1.4
1,278,092	-				-0.5
1,278,092	-				+0.1
1,278,092	-				-0.2
1,278,136	+				-1.6
1,278,180	+				+0.0
1,278,209	+				-1.2
1,278,210	-				-0.1
1,278,210	-				+0.6
1,278,210	-				-0.9
1,278,234	+				-0.1
1,278,234	+				-0.3
1,278,234	+				+0.3
1,278,234	+				+1.2
1,278,235	-				-0.1
1,278,235	-				+0.3
1,278,240	-				+0.4
1,278,280	+				-0.6
1,278,281	-				+2.0
1,278,298	+				-2.2
1,278,298	+				-0.6
1,278,298	+				-0.7
1,278,299	-				+0.4
1,278,345	+		IAI47_06285	0.13	+0.7
1,278,346	-		IAI47_06285	0.14	-0.0
1,278,346	-		IAI47_06285	0.14	-1.3
1,278,346	-		IAI47_06285	0.14	+1.4
1,278,382	+		IAI47_06285	0.18	+0.1
1,278,383	-		IAI47_06285	0.18	-1.1
1,278,420	-		IAI47_06285	0.23	-0.3
1,278,420	-		IAI47_06285	0.23	+0.9
1,278,425	+		IAI47_06285	0.24	-0.9
1,278,425	+		IAI47_06285	0.24	+1.0
1,278,425	+		IAI47_06285	0.24	-0.1
1,278,426	-		IAI47_06285	0.24	+1.4
1,278,426	-		IAI47_06285	0.24	-0.3
1,278,426	-		IAI47_06285	0.24	+0.0
1,278,431	+		IAI47_06285	0.24	-0.5
1,278,431	+		IAI47_06285	0.24	+0.5
1,278,444	+		IAI47_06285	0.26	+0.1
1,278,444	+		IAI47_06285	0.26	-0.6
1,278,445	-		IAI47_06285	0.26	+1.9
1,278,445	-		IAI47_06285	0.26	+1.1
1,278,445	-		IAI47_06285	0.26	+0.4
1,278,445	-		IAI47_06285	0.26	+1.9
1,278,445	-		IAI47_06285	0.26	-0.9
1,278,560	+		IAI47_06285	0.41	+1.0
1,278,567	+		IAI47_06285	0.42	+0.8
1,278,567	+		IAI47_06285	0.42	-0.4
1,278,568	-		IAI47_06285	0.42	+0.2
1,278,568	-		IAI47_06285	0.42	+0.7
1,278,575	+		IAI47_06285	0.43	-0.8
1,278,576	-		IAI47_06285	0.43	+2.4
1,278,576	-		IAI47_06285	0.43	-0.7
1,278,587	-		IAI47_06285	0.44	+0.4
1,278,587	-		IAI47_06285	0.44	+0.0
1,278,679	-		IAI47_06285	0.56	-0.5
1,278,679	-		IAI47_06285	0.56	+0.4
1,278,679	-		IAI47_06285	0.56	+1.7
1,278,679	-		IAI47_06285	0.56	+1.2
1,278,679	-		IAI47_06285	0.56	-0.6
1,278,679	-		IAI47_06285	0.56	-0.0
1,278,702	-		IAI47_06285	0.59	+0.3
1,278,723	+		IAI47_06285	0.62	+1.5
1,278,723	+		IAI47_06285	0.62	+0.8
1,278,723	+		IAI47_06285	0.62	+0.6
1,278,723	+		IAI47_06285	0.62	-0.2
1,278,724	-		IAI47_06285	0.62	+0.9
1,278,724	-		IAI47_06285	0.62	+1.6
1,278,724	-		IAI47_06285	0.62	+0.1
1,278,724	-		IAI47_06285	0.62	+1.0
1,278,728	+		IAI47_06285	0.62	-1.2
1,278,728	+		IAI47_06285	0.62	-0.5
1,278,728	+		IAI47_06285	0.62	+1.4
1,278,729	-		IAI47_06285	0.62	+3.4
1,278,729	-		IAI47_06285	0.62	-0.6
1,278,729	-		IAI47_06285	0.62	+1.7
1,278,745	-		IAI47_06285	0.64	+0.4
1,278,767	+		IAI47_06285	0.67	+0.4
1,278,768	-		IAI47_06285	0.67	-0.2
1,278,830	+		IAI47_06285	0.75	+0.4
1,278,831	-		IAI47_06285	0.75	-0.8
1,278,838	-		IAI47_06285	0.76	+0.4
1,278,894	-		IAI47_06285	0.84	+0.4
1,278,905	+		IAI47_06285	0.85	+0.6
1,278,906	-		IAI47_06285	0.85	-0.9
1,278,906	-		IAI47_06285	0.85	+0.2
1,278,959	+				-0.1
1,278,959	+				+0.7
1,278,960	-				-0.6
1,278,960	-				+0.2
1,278,972	+				+0.2
1,278,993	+				-0.2
1,279,011	+				+1.2
1,279,011	+				-0.2
1,279,011	+				-0.3
1,279,012	-				+0.2
1,279,037	+				-0.6
1,279,037	+				+0.4
1,279,037	+				-0.6
1,279,038	-				+0.4
1,279,135	+				+0.9
1,279,135	+				-0.3
1,279,135	+				-0.6
1,279,136	-				+0.5
1,279,136	-				+0.2
1,279,136	-				+1.2
1,279,136	-				+0.7
1,279,136	-				+0.2
1,279,136	-				+1.1
1,279,136	-				+0.7
1,279,142	-				-1.0
1,279,142	-				+0.7
1,279,142	-				+1.4
1,279,207	+				-0.8
1,279,207	+				-0.1
1,279,207	+				+1.5
1,279,207	+				-0.2
1,279,207	+				+0.6
1,279,207	+				-0.3
1,279,207	+				+0.2
1,279,207	+				-0.8
1,279,207	+				+0.8
1,279,207	+				-0.3
1,279,208	-				-0.6
1,279,208	-				+0.8
1,279,208	-				+0.2
1,279,208	-				-0.2
1,279,208	-				-1.2
1,279,208	-				+0.3
1,279,208	-				+1.6
1,279,208	-				+0.2
1,279,208	-				-0.3
1,279,213	+				+0.7
1,279,213	+				-1.0
1,279,213	+				+2.7
1,279,223	+				+1.6
1,279,223	+				+1.2
1,279,223	+				+1.7
1,279,223	+				-0.4
1,279,223	+				-0.3
1,279,224	-				+1.6
1,279,274	+		IAI47_06290	0.11	+1.6
1,279,274	+		IAI47_06290	0.11	-0.1
1,279,275	-		IAI47_06290	0.11	-0.3
1,279,275	-		IAI47_06290	0.11	+2.4
1,279,354	+		IAI47_06290	0.22	+1.8
1,279,354	+		IAI47_06290	0.22	+1.0
1,279,355	-		IAI47_06290	0.22	+0.1
1,279,388	+		IAI47_06290	0.27	-0.0
1,279,388	+		IAI47_06290	0.27	+1.4
1,279,388	+		IAI47_06290	0.27	+2.7
1,279,389	-		IAI47_06290	0.27	+1.0
1,279,408	+		IAI47_06290	0.30	+1.0
1,279,409	-		IAI47_06290	0.30	+0.7
1,279,409	-		IAI47_06290	0.30	+1.7
1,279,409	-		IAI47_06290	0.30	-0.1
1,279,409	-		IAI47_06290	0.30	-0.8
1,279,409	-		IAI47_06290	0.30	+0.4
1,279,409	-		IAI47_06290	0.30	-1.8
1,279,452	+		IAI47_06290	0.36	+1.3
1,279,489	-		IAI47_06290	0.42	+1.0
1,279,506	+		IAI47_06290	0.44	+0.7
1,279,506	+		IAI47_06290	0.44	+1.0
1,279,506	+		IAI47_06290	0.44	+0.4
1,279,506	+		IAI47_06290	0.44	-1.4
1,279,506	+		IAI47_06290	0.44	+1.7
1,279,506	+		IAI47_06290	0.44	+1.4
1,279,506	+		IAI47_06290	0.44	-0.2
1,279,506	+		IAI47_06290	0.44	-0.1
1,279,506	+		IAI47_06290	0.44	+1.4
1,279,507	-		IAI47_06290	0.44	-0.9
1,279,510	+		IAI47_06290	0.45	-0.4
1,279,510	+		IAI47_06290	0.45	+0.7
1,279,510	+		IAI47_06290	0.45	+0.6
1,279,510	+		IAI47_06290	0.45	-0.4
1,279,510	+		IAI47_06290	0.45	+0.6
1,279,511	-		IAI47_06290	0.45	+1.4
1,279,511	-		IAI47_06290	0.45	+1.2
1,279,511	-		IAI47_06290	0.45	+2.0
1,279,511	-		IAI47_06290	0.45	+2.6
1,279,511	-		IAI47_06290	0.45	-0.1
1,279,511	-		IAI47_06290	0.45	+1.1
1,279,511	-		IAI47_06290	0.45	+0.8
1,279,511	-		IAI47_06290	0.45	+0.2
1,279,511	-		IAI47_06290	0.45	+0.3
1,279,519	+		IAI47_06290	0.46	+0.7
1,279,519	+		IAI47_06290	0.46	+2.1
1,279,519	+		IAI47_06290	0.46	+1.1
1,279,519	+		IAI47_06290	0.46	+0.5
1,279,519	+		IAI47_06290	0.46	+1.4
1,279,520	-		IAI47_06290	0.46	+1.4
1,279,548	+		IAI47_06290	0.50	-0.2
1,279,548	+		IAI47_06290	0.50	-1.2
1,279,548	+		IAI47_06290	0.50	+1.2
1,279,548	+		IAI47_06290	0.50	-0.3
1,279,548	+		IAI47_06290	0.50	+0.4
1,279,548	+		IAI47_06290	0.50	-0.3
1,279,549	-		IAI47_06290	0.50	-0.9
1,279,549	-		IAI47_06290	0.50	+1.4
1,279,549	-		IAI47_06290	0.50	+0.9
1,279,549	-		IAI47_06290	0.50	-0.3
1,279,571	+		IAI47_06290	0.54	+0.2
1,279,571	+		IAI47_06290	0.54	-1.3
1,279,571	+		IAI47_06290	0.54	+0.9
1,279,571	+		IAI47_06290	0.54	+1.1
1,279,572	-		IAI47_06290	0.54	+0.6
1,279,572	-		IAI47_06290	0.54	+0.8
1,279,581	+		IAI47_06290	0.55	+0.7
1,279,582	-		IAI47_06290	0.55	+0.8
1,279,645	+		IAI47_06290	0.64	-0.6
1,279,645	+		IAI47_06290	0.64	-0.8
1,279,646	-		IAI47_06290	0.64	+0.1
1,279,646	-		IAI47_06290	0.64	+2.0
1,279,758	+		IAI47_06290	0.81	+2.5
1,279,758	+		IAI47_06290	0.81	-0.3
1,279,759	-		IAI47_06290	0.81	+0.3
1,279,782	+		IAI47_06290	0.84	-0.6
1,279,802	-		IAI47_06290	0.87	+0.8
1,279,802	-		IAI47_06290	0.87	+0.7
1,279,855	+				-0.2
1,279,855	+				+0.4
1,279,856	-				-1.0
1,279,856	-				-0.1
1,279,857	+				-0.8
1,279,857	+				+0.4
1,279,857	+				-1.9
1,279,857	+				+1.7
1,279,857	+				-0.6
1,279,858	-				+2.0
1,279,858	-				-1.2
1,279,858	-				+0.4
1,279,883	-				+1.2
1,279,883	-				+0.4
1,279,894	+				-1.2
1,279,905	-				+3.4
1,279,942	+				+0.4
1,279,942	+				-0.2
1,279,955	-		IAI47_06295	0.10	-0.6