Strain Fitness in Pantoea sp. MT58 around IAI47_06040

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,230,742	-		IAI47_06035	0.40	+0.4
1,230,768	-		IAI47_06035	0.42	-0.7
1,230,768	-		IAI47_06035	0.42	+2.0
1,230,768	-		IAI47_06035	0.42	-0.0
1,230,769	+		IAI47_06035	0.43	+2.2
1,230,769	+		IAI47_06035	0.43	+0.7
1,230,769	+		IAI47_06035	0.43	+0.4
1,230,770	-		IAI47_06035	0.43	+4.6
1,230,770	-		IAI47_06035	0.43	-2.2
1,230,770	-		IAI47_06035	0.43	-1.3
1,230,781	+		IAI47_06035	0.44	-0.9
1,230,782	-		IAI47_06035	0.44	+0.4
1,230,799	+		IAI47_06035	0.45	+0.8
1,230,800	-		IAI47_06035	0.45	-0.8
1,230,800	-		IAI47_06035	0.45	+1.0
1,230,842	+		IAI47_06035	0.49	+0.4
1,230,843	-		IAI47_06035	0.49	+0.4
1,230,852	-		IAI47_06035	0.50	-1.2
1,230,864	-		IAI47_06035	0.51	-0.6
1,230,864	-		IAI47_06035	0.51	+0.4
1,230,911	+		IAI47_06035	0.55	-1.0
1,230,949	-		IAI47_06035	0.58	-0.6
1,231,013	+		IAI47_06035	0.64	+0.7
1,231,014	-		IAI47_06035	0.64	-0.2
1,231,023	+		IAI47_06035	0.65	-0.1
1,231,024	-		IAI47_06035	0.65	+1.1
1,231,024	-		IAI47_06035	0.65	-1.2
1,231,024	-		IAI47_06035	0.65	-0.4
1,231,032	+		IAI47_06035	0.66	+1.9
1,231,033	-		IAI47_06035	0.66	-1.2
1,231,079	+		IAI47_06035	0.70	-0.4
1,231,080	-		IAI47_06035	0.70	-0.7
1,231,083	-		IAI47_06035	0.70	-0.3
1,231,094	+		IAI47_06035	0.71	-0.9
1,231,106	-		IAI47_06035	0.72	+2.0
1,231,193	-		IAI47_06035	0.80	+2.8
1,231,199	-		IAI47_06035	0.80	+0.6
1,231,259	+		IAI47_06035	0.86	-0.5
1,231,259	+		IAI47_06035	0.86	+0.4
1,231,259	+		IAI47_06035	0.86	-0.7
1,231,259	+		IAI47_06035	0.86	+0.7
1,231,259	+		IAI47_06035	0.86	-2.2
1,231,260	-		IAI47_06035	0.86	+1.0
1,231,281	+		IAI47_06035	0.88	+0.2
1,231,287	+		IAI47_06035	0.88	+1.4
1,231,288	-		IAI47_06035	0.88	+1.4
1,231,288	-		IAI47_06035	0.88	-0.8
1,231,288	-		IAI47_06035	0.88	-0.6
1,231,288	-		IAI47_06035	0.88	-2.2
1,231,291	+		IAI47_06035	0.89	+0.0
1,231,291	+		IAI47_06035	0.89	+2.7
1,231,292	-		IAI47_06035	0.89	-1.9
1,231,292	-		IAI47_06035	0.89	-0.2
1,231,292	-		IAI47_06035	0.89	-2.0
1,231,292	-		IAI47_06035	0.89	+2.4
1,231,294	+		IAI47_06035	0.89	+0.1
1,231,294	+		IAI47_06035	0.89	-0.6
1,231,295	-		IAI47_06035	0.89	+2.1
1,231,295	-		IAI47_06035	0.89	+0.5
1,231,299	-		IAI47_06035	0.89	-1.2
1,231,337	-				-0.0
1,231,338	+				-0.4
1,231,339	-				-0.6
1,231,343	-				+0.4
1,231,343	-				-1.3
1,231,367	-				+0.4
1,231,379	+				-0.6
1,231,388	+				+0.2
1,231,389	-				-0.9
1,231,389	-				-1.4
1,231,390	+				+0.1
1,231,390	+				+1.8
1,231,390	+				-1.7
1,231,390	+				-0.2
1,231,421	-				+2.4
1,231,421	-				-1.2
1,231,454	+				-0.5
1,231,454	+				-0.6
1,231,454	+				+0.7
1,231,455	-				-1.6
1,231,462	-				-0.1
1,231,472	-				-0.9
1,231,483	+				+2.0
1,231,484	-				+0.8
1,231,484	-				+0.4
1,231,484	-				-0.3
1,231,502	+				-0.9
1,231,502	+				+0.8
1,231,503	-				+0.4
1,231,518	-				+0.7
1,231,525	-				-0.3
1,231,525	-				-0.9
1,231,525	-				-1.3
1,231,525	-				-0.8
1,231,525	-				+0.4
1,231,598	+				-0.4
1,231,599	-				+0.8
1,231,653	+				+0.8
1,231,653	+				-0.5
1,231,654	-				+0.4
1,231,654	-				+0.4
1,231,688	+				+0.2
1,231,689	-				-0.4
1,231,719	+				+1.4
1,231,738	+				-0.2
1,231,738	+				-0.9
1,231,738	+				+1.1
1,231,739	-				+0.4
1,231,739	-				+0.8
1,231,763	-				+0.3
1,231,763	-				+0.2
1,231,852	+		IAI47_06040	0.46	-0.4
1,231,853	-		IAI47_06040	0.46	-1.6
1,231,853	-		IAI47_06040	0.46	+0.5
1,231,942	+		IAI47_06040	0.83	+1.1
1,231,942	+		IAI47_06040	0.83	-0.1
1,231,943	-		IAI47_06040	0.84	-0.3
1,231,943	-		IAI47_06040	0.84	+0.4
1,231,943	-		IAI47_06040	0.84	+1.4
1,231,977	+				-0.6
1,231,977	+				+1.0
1,231,977	+				-0.0
1,231,977	+				+0.6
1,231,977	+				-0.3
1,231,977	+				+0.1
1,231,977	+				+0.5
1,231,977	+				+2.0
1,231,978	-				-1.8
1,231,978	-				+0.4
1,231,978	-				-0.8
1,231,978	-				-1.0
1,231,978	-				+0.5
1,231,978	-				-0.4
1,231,978	-				-1.0
1,231,978	-				+0.7
1,231,978	-				+0.2
1,231,982	+				-0.2
1,231,982	+				-1.0
1,231,983	-				+0.1
1,232,010	+				+0.4
1,232,010	+				-0.3
1,232,011	-				+0.7
1,232,011	-				-0.8
1,232,011	-				-1.0
1,232,011	-				-0.6
1,232,011	-				-1.2
1,232,011	-				-1.2
1,232,036	+		IAI47_06045	0.16	+1.0
1,232,036	+		IAI47_06045	0.16	-0.7
1,232,036	+		IAI47_06045	0.16	-0.9
1,232,036	+		IAI47_06045	0.16	-0.1
1,232,036	+		IAI47_06045	0.16	-1.0
1,232,037	-		IAI47_06045	0.17	+0.6
1,232,037	-		IAI47_06045	0.17	-0.3
1,232,037	-		IAI47_06045	0.17	-2.2
1,232,037	-		IAI47_06045	0.17	+2.4
1,232,037	-		IAI47_06045	0.17	-0.2
1,232,045	+		IAI47_06045	0.19	+0.7
1,232,045	+		IAI47_06045	0.19	-0.6
1,232,045	+		IAI47_06045	0.19	+0.0
1,232,046	-		IAI47_06045	0.19	-0.5
1,232,046	-		IAI47_06045	0.19	-0.8
1,232,046	-		IAI47_06045	0.19	+1.0
1,232,046	-		IAI47_06045	0.19	-0.3
1,232,046	-		IAI47_06045	0.19	+0.4
1,232,046	-		IAI47_06045	0.19	-0.1
1,232,046	-		IAI47_06045	0.19	+1.3
1,232,046	-		IAI47_06045	0.19	-1.1
1,232,046	-		IAI47_06045	0.19	+1.2
1,232,125	+		IAI47_06045	0.44	-0.5
1,232,125	+		IAI47_06045	0.44	+0.3
1,232,125	+		IAI47_06045	0.44	+0.2
1,232,157	+		IAI47_06045	0.54	+1.1
1,232,192	+		IAI47_06045	0.65	-0.0
1,232,192	+		IAI47_06045	0.65	+1.0
1,232,192	+		IAI47_06045	0.65	+0.0
1,232,192	+		IAI47_06045	0.65	-1.2
1,232,192	+		IAI47_06045	0.65	-0.8
1,232,192	+		IAI47_06045	0.65	-0.6
1,232,240	+		IAI47_06045	0.79	+0.7
1,232,240	+		IAI47_06045	0.79	-0.9
1,232,241	-		IAI47_06045	0.80	-1.8
1,232,329	-				-0.1
1,232,329	-				-0.1
1,232,329	-				+0.2
1,232,365	+				-0.9
1,232,366	-				-1.4
1,232,381	+				+0.6
1,232,381	+				-1.2
1,232,382	-				+0.9
1,232,396	+				-0.3
1,232,396	+				+0.3
1,232,396	+				+0.7
1,232,396	+				-0.4
1,232,397	-				-0.0
1,232,397	-				+0.5
1,232,481	+		IAI47_06050	0.14	-0.5
1,232,539	+		IAI47_06050	0.19	-0.1
1,232,556	+		IAI47_06050	0.20	+1.0
1,232,557	-		IAI47_06050	0.20	-1.9
1,232,609	+		IAI47_06050	0.25	-0.4
1,232,609	+		IAI47_06050	0.25	-0.0
1,232,609	+		IAI47_06050	0.25	-0.6
1,232,610	-		IAI47_06050	0.25	+1.3
1,232,610	-		IAI47_06050	0.25	+0.4
1,232,625	+		IAI47_06050	0.26	+1.3
1,232,625	+		IAI47_06050	0.26	-1.0
1,232,695	+		IAI47_06050	0.32	+3.1
1,232,695	+		IAI47_06050	0.32	-2.0
1,232,696	-		IAI47_06050	0.32	-0.2
1,232,712	+		IAI47_06050	0.34	-0.2
1,232,712	+		IAI47_06050	0.34	-0.2
1,232,712	+		IAI47_06050	0.34	-0.6
1,232,713	-		IAI47_06050	0.34	+0.1
1,232,715	+		IAI47_06050	0.34	-0.8
1,232,715	+		IAI47_06050	0.34	-1.0
1,232,715	+		IAI47_06050	0.34	-0.9
1,232,716	-		IAI47_06050	0.34	+0.2
1,232,716	-		IAI47_06050	0.34	-0.9
1,232,716	-		IAI47_06050	0.34	+0.8
1,232,716	-		IAI47_06050	0.34	+0.2
1,232,716	-		IAI47_06050	0.34	-0.6
1,232,716	-		IAI47_06050	0.34	+1.0
1,232,758	+		IAI47_06050	0.38	-1.2
1,232,758	+		IAI47_06050	0.38	+1.7
1,232,758	+		IAI47_06050	0.38	-1.9
1,232,758	+		IAI47_06050	0.38	-0.6
1,232,758	+		IAI47_06050	0.38	+0.4
1,232,781	+		IAI47_06050	0.40	-0.6
1,232,781	+		IAI47_06050	0.40	+0.8
1,232,782	-		IAI47_06050	0.40	-0.6
1,232,782	-		IAI47_06050	0.40	-0.7
1,232,783	+		IAI47_06050	0.40	-0.3
1,232,784	-		IAI47_06050	0.40	+0.4
1,232,784	-		IAI47_06050	0.40	-0.8
1,232,784	-		IAI47_06050	0.40	+0.1
1,232,828	+		IAI47_06050	0.44	+0.8
1,232,844	+		IAI47_06050	0.45	-0.6
1,232,866	-		IAI47_06050	0.47	+0.3
1,232,866	-		IAI47_06050	0.47	-0.0
1,232,882	+		IAI47_06050	0.48	-0.7
1,232,882	+		IAI47_06050	0.48	+0.6
1,232,883	-		IAI47_06050	0.48	-0.2
1,232,883	-		IAI47_06050	0.48	-0.6
1,232,883	-		IAI47_06050	0.48	-0.2
1,232,883	-		IAI47_06050	0.48	+0.1
1,232,883	-		IAI47_06050	0.48	+0.5
1,232,883	-		IAI47_06050	0.48	-0.6
1,232,897	+		IAI47_06050	0.49	-0.6
1,232,935	-		IAI47_06050	0.53	-1.7
1,232,936	+		IAI47_06050	0.53	-2.4
1,232,936	+		IAI47_06050	0.53	-0.1
1,232,936	+		IAI47_06050	0.53	+0.6
1,232,936	+		IAI47_06050	0.53	-0.2
1,232,936	+		IAI47_06050	0.53	-1.2
1,232,936	+		IAI47_06050	0.53	+0.1
1,232,936	+		IAI47_06050	0.53	+0.1
1,232,936	+		IAI47_06050	0.53	+0.8
1,232,937	-		IAI47_06050	0.53	-0.2
1,232,937	-		IAI47_06050	0.53	+0.1
1,232,937	-		IAI47_06050	0.53	-2.8
1,232,937	-		IAI47_06050	0.53	+0.4
1,232,937	-		IAI47_06050	0.53	-0.5
1,232,937	-		IAI47_06050	0.53	+0.2
1,232,937	-		IAI47_06050	0.53	-2.1
1,232,937	-		IAI47_06050	0.53	+0.5
1,232,937	-		IAI47_06050	0.53	-1.0
1,232,937	-		IAI47_06050	0.53	+0.3
1,232,937	-		IAI47_06050	0.53	+1.0
1,232,937	-		IAI47_06050	0.53	+4.6
1,232,937	-		IAI47_06050	0.53	+1.0
1,232,940	+		IAI47_06050	0.53	-1.0
1,232,940	+		IAI47_06050	0.53	+1.3
1,232,940	+		IAI47_06050	0.53	+0.1
1,232,941	-		IAI47_06050	0.53	-0.1
1,232,953	+		IAI47_06050	0.54	+0.7