Strain Fitness in Pantoea sp. MT58 around IAI47_05705

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,191,641	+				-0.6
1,191,641	+				+0.4
1,191,642	-				+0.5
1,191,642	-				+0.4
1,191,660	+				-1.2
1,191,661	-				+0.1
1,191,661	-				+0.3
1,191,661	-				+1.8
1,191,695	-				+1.1
1,191,695	-				-0.5
1,191,695	-				+0.1
1,191,711	+				-1.9
1,191,712	-				-0.1
1,191,715	+				-0.6
1,191,731	+				+1.5
1,191,731	+				-1.6
1,191,731	+				+1.1
1,191,731	+				+0.8
1,191,732	-				-0.8
1,191,732	-				+0.2
1,191,732	-				-1.8
1,191,733	+				+0.3
1,191,733	+				-0.3
1,191,734	-				+0.7
1,191,749	+				+0.7
1,191,749	+				-0.6
1,191,750	-				-0.4
1,191,750	-				-0.9
1,191,760	-				+2.0
1,191,777	+		IAI47_05695	0.13	-0.8
1,191,777	+		IAI47_05695	0.13	+1.4
1,191,796	+		IAI47_05695	0.17	+2.6
1,191,806	-		IAI47_05695	0.19	+0.0
1,191,806	-		IAI47_05695	0.19	+0.4
1,191,820	+		IAI47_05695	0.22	+1.3
1,191,820	+		IAI47_05695	0.22	+3.0
1,191,821	-		IAI47_05695	0.22	+0.2
1,191,821	-		IAI47_05695	0.22	+0.7
1,191,827	+		IAI47_05695	0.23	-1.1
1,191,827	+		IAI47_05695	0.23	+1.4
1,191,827	+		IAI47_05695	0.23	-1.5
1,191,827	+		IAI47_05695	0.23	+0.3
1,191,827	+		IAI47_05695	0.23	+1.2
1,191,828	-		IAI47_05695	0.23	+0.0
1,191,828	-		IAI47_05695	0.23	-0.6
1,191,828	-		IAI47_05695	0.23	+0.6
1,191,828	-		IAI47_05695	0.23	-1.6
1,191,828	-		IAI47_05695	0.23	+0.4
1,191,831	+		IAI47_05695	0.24	-0.1
1,191,831	+		IAI47_05695	0.24	-0.6
1,191,831	+		IAI47_05695	0.24	-1.2
1,191,831	+		IAI47_05695	0.24	-0.2
1,191,832	-		IAI47_05695	0.24	+0.6
1,191,832	-		IAI47_05695	0.24	+1.1
1,191,832	-		IAI47_05695	0.24	-0.1
1,191,832	-		IAI47_05695	0.24	+0.4
1,191,832	-		IAI47_05695	0.24	-0.6
1,191,832	-		IAI47_05695	0.24	-0.2
1,191,832	-		IAI47_05695	0.24	+0.4
1,191,832	-		IAI47_05695	0.24	+1.4
1,191,855	-		IAI47_05695	0.29	-0.7
1,191,855	-		IAI47_05695	0.29	+0.1
1,191,855	-		IAI47_05695	0.29	-0.8
1,191,855	-		IAI47_05695	0.29	-0.5
1,191,855	-		IAI47_05695	0.29	-0.3
1,191,855	-		IAI47_05695	0.29	-0.8
1,191,866	+		IAI47_05695	0.31	+0.9
1,191,866	+		IAI47_05695	0.31	+0.2
1,191,866	+		IAI47_05695	0.31	+1.0
1,191,867	-		IAI47_05695	0.31	-0.9
1,191,867	-		IAI47_05695	0.31	-1.4
1,191,893	+		IAI47_05695	0.36	+0.7
1,191,893	+		IAI47_05695	0.36	-0.2
1,191,899	+		IAI47_05695	0.37	-0.5
1,191,899	+		IAI47_05695	0.37	+0.1
1,191,899	+		IAI47_05695	0.37	+0.4
1,191,900	-		IAI47_05695	0.37	-0.4
1,191,900	-		IAI47_05695	0.37	+1.9
1,191,900	-		IAI47_05695	0.37	+0.1
1,191,900	-		IAI47_05695	0.37	-1.5
1,191,901	+		IAI47_05695	0.38	+0.7
1,191,901	+		IAI47_05695	0.38	+0.7
1,191,914	+		IAI47_05695	0.40	+1.4
1,191,929	+		IAI47_05695	0.43	+1.0
1,191,930	-		IAI47_05695	0.43	-1.1
1,191,946	-		IAI47_05695	0.47	-2.0
1,191,946	-		IAI47_05695	0.47	-0.9
1,191,946	-		IAI47_05695	0.47	-0.9
1,191,946	-		IAI47_05695	0.47	+0.7
1,191,959	+		IAI47_05695	0.49	+1.1
1,191,959	+		IAI47_05695	0.49	+1.8
1,191,960	-		IAI47_05695	0.49	+1.3
1,191,960	-		IAI47_05695	0.49	-1.2
1,191,960	-		IAI47_05695	0.49	+0.2
1,192,016	+		IAI47_05695	0.60	-0.2
1,192,016	+		IAI47_05695	0.60	+0.0
1,192,016	+		IAI47_05695	0.60	+0.3
1,192,016	+		IAI47_05695	0.60	-0.1
1,192,017	-		IAI47_05695	0.61	+0.1
1,192,017	-		IAI47_05695	0.61	-1.0
1,192,017	-		IAI47_05695	0.61	-1.9
1,192,017	-		IAI47_05695	0.61	+0.0
1,192,017	-		IAI47_05695	0.61	+0.3
1,192,055	+		IAI47_05695	0.68	-0.8
1,192,055	+		IAI47_05695	0.68	-0.6
1,192,056	-		IAI47_05695	0.68	-0.8
1,192,088	+		IAI47_05695	0.75	+0.2
1,192,088	+		IAI47_05695	0.75	+0.4
1,192,088	+		IAI47_05695	0.75	-0.3
1,192,088	+		IAI47_05695	0.75	-1.7
1,192,089	-		IAI47_05695	0.75	-1.0
1,192,089	-		IAI47_05695	0.75	+0.4
1,192,091	+		IAI47_05695	0.75	+1.3
1,192,092	-		IAI47_05695	0.75	+1.4
1,192,092	-		IAI47_05695	0.75	-0.9
1,192,092	-		IAI47_05695	0.75	+1.2
1,192,132	-		IAI47_05695	0.83	+0.0
1,192,132	-		IAI47_05695	0.83	+1.0
1,192,132	-		IAI47_05695	0.83	-0.5
1,192,132	-		IAI47_05695	0.83	+0.4
1,192,132	-		IAI47_05695	0.83	-0.4
1,192,135	+		IAI47_05695	0.84	-0.3
1,192,135	+		IAI47_05695	0.84	-1.0
1,192,135	+		IAI47_05695	0.84	+1.4
1,192,135	+		IAI47_05695	0.84	+0.7
1,192,135	+		IAI47_05695	0.84	+0.1
1,192,135	+		IAI47_05695	0.84	+1.2
1,192,136	-		IAI47_05695	0.84	-0.9
1,192,136	-		IAI47_05695	0.84	-1.3
1,192,136	-		IAI47_05695	0.84	+0.6
1,192,136	-		IAI47_05695	0.84	+0.3
1,192,136	-		IAI47_05695	0.84	+1.2
1,192,140	+		IAI47_05695	0.85	+1.1
1,192,140	+		IAI47_05695	0.85	-0.4
1,192,140	+		IAI47_05695	0.85	-0.1
1,192,140	+		IAI47_05695	0.85	-1.0
1,192,140	+		IAI47_05695	0.85	-0.9
1,192,140	+		IAI47_05695	0.85	+0.1
1,192,140	+		IAI47_05695	0.85	-1.7
1,192,140	+		IAI47_05695	0.85	-0.3
1,192,140	+		IAI47_05695	0.85	+3.0
1,192,141	-		IAI47_05695	0.85	+0.2
1,192,141	-		IAI47_05695	0.85	-1.4
1,192,141	-		IAI47_05695	0.85	+0.7
1,192,141	-		IAI47_05695	0.85	+0.4
1,192,141	-		IAI47_05695	0.85	-0.3
1,192,141	-		IAI47_05695	0.85	+1.4
1,192,141	-		IAI47_05695	0.85	-0.9
1,192,141	-		IAI47_05695	0.85	+1.0
1,192,141	-		IAI47_05695	0.85	-0.4
1,192,141	-		IAI47_05695	0.85	-0.1
1,192,141	-		IAI47_05695	0.85	-2.2
1,192,152	-		IAI47_05695	0.87	+1.0
1,192,163	+		IAI47_05695	0.89	-0.5
1,192,163	+		IAI47_05695	0.89	+1.9
1,192,175	-				+0.0
1,192,175	-				+1.3
1,192,175	-				-0.7
1,192,194	+				+0.4
1,192,194	+				-0.6
1,192,194	+				+0.4
1,192,194	+				-0.4
1,192,195	-				+0.0
1,192,195	-				-1.6
1,192,195	-				-0.8
1,192,195	-				-0.2
1,192,195	-				-0.7
1,192,195	-				-0.3
1,192,221	+				+0.4
1,192,235	+				-0.8
1,192,301	+				-0.8
1,192,327	-				-0.5
1,192,334	+				-0.6
1,192,335	-				-0.8
1,192,346	+				-0.4
1,192,347	-				+1.3
1,192,347	-				-0.4
1,192,347	-				-2.0
1,192,347	-				-0.6
1,192,347	-				-0.2
1,192,425	+		IAI47_05700	0.28	-0.6
1,192,425	+		IAI47_05700	0.28	+3.0
1,192,425	+		IAI47_05700	0.28	-0.8
1,192,425	+		IAI47_05700	0.28	+0.5
1,192,426	-		IAI47_05700	0.28	-0.1
1,192,426	-		IAI47_05700	0.28	-1.0
1,192,426	-		IAI47_05700	0.28	+0.0
1,192,437	-		IAI47_05700	0.32	+0.6
1,192,437	-		IAI47_05700	0.32	-0.9
1,192,464	+		IAI47_05700	0.42	+1.8
1,192,464	+		IAI47_05700	0.42	-0.3
1,192,465	-		IAI47_05700	0.42	+0.5
1,192,465	-		IAI47_05700	0.42	-0.2
1,192,571	+		IAI47_05700	0.79	-0.8
1,192,572	-		IAI47_05700	0.80	+1.4
1,192,572	-		IAI47_05700	0.80	+1.4
1,192,572	-		IAI47_05700	0.80	-0.6
1,192,603	+				-1.4
1,192,603	+				+0.3
1,192,604	-				-0.5
1,192,604	-				-1.0
1,192,604	-				+1.2
1,192,620	-				+0.2
1,192,643	+				+0.0
1,192,644	-				-1.0
1,192,644	-				-0.1
1,192,644	-				-1.2
1,192,644	-				+1.4
1,192,644	-				-0.6
1,192,648	+				+0.4
1,192,693	+		IAI47_05705	0.28	+0.7
1,192,693	+		IAI47_05705	0.28	-0.2
1,192,694	-		IAI47_05705	0.28	+1.6
1,192,694	-		IAI47_05705	0.28	+0.4
1,192,718	-		IAI47_05705	0.38	+1.4
1,192,778	+		IAI47_05705	0.63	+1.2
1,192,779	-		IAI47_05705	0.63	+2.0
1,192,779	-		IAI47_05705	0.63	+0.7
1,192,779	-		IAI47_05705	0.63	+0.4
1,192,779	-		IAI47_05705	0.63	+0.2
1,192,789	+		IAI47_05705	0.67	-0.7
1,192,789	+		IAI47_05705	0.67	+0.4
1,192,789	+		IAI47_05705	0.67	-0.8
1,192,790	-		IAI47_05705	0.67	+1.5
1,192,790	-		IAI47_05705	0.67	+0.5
1,192,810	-		IAI47_05705	0.76	+2.4
1,192,821	-		IAI47_05705	0.80	+0.8
1,192,854	+				+0.4
1,192,855	-				+0.8
1,192,855	-				+1.2
1,192,868	+				+0.7
1,192,868	+				+1.7
1,192,868	+				-0.6
1,192,868	+				+0.4
1,192,868	+				+0.4
1,192,868	+				-0.3
1,192,868	+				+0.7
1,192,869	-				+0.4
1,192,869	-				-0.7
1,192,872	+				-1.0
1,192,891	+				-1.4
1,192,891	+				+0.3
1,192,891	+				+0.5
1,192,891	+				+0.2
1,192,892	-				-0.5
1,192,892	-				-1.3
1,192,892	-				-0.6
1,192,892	-				+1.2
1,192,892	-				-0.6
1,192,894	-				+0.5
1,192,894	-				-0.6
1,192,894	-				+0.7
1,192,901	-				+0.4
1,192,926	+		IAI47_05710	0.11	+0.2
1,192,926	+		IAI47_05710	0.11	+1.2
1,192,926	+		IAI47_05710	0.11	+0.8
1,192,927	-		IAI47_05710	0.11	+0.7
1,192,941	+		IAI47_05710	0.17	+1.2
1,192,941	+		IAI47_05710	0.17	-0.7
1,192,966	+		IAI47_05710	0.27	-0.0
1,192,966	+		IAI47_05710	0.27	-1.4
1,192,967	-		IAI47_05710	0.28	-1.2
1,192,967	-		IAI47_05710	0.28	-1.0
1,193,014	+		IAI47_05710	0.47	+2.4
1,193,039	+		IAI47_05710	0.57	-0.6
1,193,040	-		IAI47_05710	0.57	-0.4
1,193,053	-		IAI47_05710	0.63	-0.7
1,193,053	-		IAI47_05710	0.63	+0.1
1,193,053	-		IAI47_05710	0.63	+1.2
1,193,102	+		IAI47_05710	0.83	+1.8
1,193,138	+				-0.1
1,193,139	-				+3.3
1,193,139	-				-0.8
1,193,139	-				-0.5
1,193,157	+				+3.1
1,193,157	+				+0.4
1,193,182	+		IAI47_05715	0.12	-0.8
1,193,199	+		IAI47_05715	0.17	-0.7
1,193,199	+		IAI47_05715	0.17	-1.2
1,193,199	+		IAI47_05715	0.17	-0.4
1,193,199	+		IAI47_05715	0.17	+0.7
1,193,200	-		IAI47_05715	0.18	-0.4
1,193,200	-		IAI47_05715	0.18	-1.3
1,193,225	+		IAI47_05715	0.25	+2.0
1,193,225	+		IAI47_05715	0.25	+0.2
1,193,225	+		IAI47_05715	0.25	-0.3
1,193,226	-		IAI47_05715	0.26	-0.6
1,193,252	+		IAI47_05715	0.33	-0.3
1,193,252	+		IAI47_05715	0.33	+1.0
1,193,253	-		IAI47_05715	0.34	+0.4
1,193,253	-		IAI47_05715	0.34	+1.6
1,193,253	-		IAI47_05715	0.34	+0.6
1,193,253	-		IAI47_05715	0.34	-0.2
1,193,253	-		IAI47_05715	0.34	+1.1
1,193,268	+		IAI47_05715	0.38	-1.1
1,193,295	+		IAI47_05715	0.46	-0.4
1,193,296	-		IAI47_05715	0.47	+0.1
1,193,310	+		IAI47_05715	0.51	-0.3
1,193,310	+		IAI47_05715	0.51	-0.7
1,193,310	+		IAI47_05715	0.51	+0.3
1,193,310	+		IAI47_05715	0.51	-1.8
1,193,310	+		IAI47_05715	0.51	-0.9
1,193,311	-		IAI47_05715	0.51	-0.8
1,193,311	-		IAI47_05715	0.51	-1.6
1,193,311	-		IAI47_05715	0.51	-0.6
1,193,311	-		IAI47_05715	0.51	-0.2
1,193,311	-		IAI47_05715	0.51	-0.9
1,193,311	-		IAI47_05715	0.51	+1.4
1,193,311	-		IAI47_05715	0.51	-0.4
1,193,311	-		IAI47_05715	0.51	-0.4
1,193,333	-		IAI47_05715	0.58	-0.7
1,193,373	-		IAI47_05715	0.70	+0.6
1,193,398	+		IAI47_05715	0.77	-1.9
1,193,399	-		IAI47_05715	0.77	-1.9
1,193,399	-		IAI47_05715	0.77	+0.2
1,193,399	-		IAI47_05715	0.77	+1.1
1,193,399	-		IAI47_05715	0.77	-0.5
1,193,399	-		IAI47_05715	0.77	+1.3
1,193,399	-		IAI47_05715	0.77	+0.6
1,193,400	+		IAI47_05715	0.78	-1.2
1,193,400	+		IAI47_05715	0.78	-1.2
1,193,400	+		IAI47_05715	0.78	-0.2
1,193,400	+		IAI47_05715	0.78	-0.3
1,193,400	+		IAI47_05715	0.78	-1.2
1,193,400	+		IAI47_05715	0.78	-0.5
1,193,401	-		IAI47_05715	0.78	-0.4
1,193,401	-		IAI47_05715	0.78	+1.2
1,193,401	-		IAI47_05715	0.78	+0.1
1,193,415	+		IAI47_05715	0.82	+1.3
1,193,415	+		IAI47_05715	0.82	+0.7
1,193,415	+		IAI47_05715	0.82	+0.8
1,193,415	+		IAI47_05715	0.82	-0.6
1,193,415	+		IAI47_05715	0.82	+0.0
1,193,415	+		IAI47_05715	0.82	+0.4
1,193,415	+		IAI47_05715	0.82	+1.1
1,193,416	-		IAI47_05715	0.83	+0.4
1,193,416	-		IAI47_05715	0.83	+0.4
1,193,416	-		IAI47_05715	0.83	-0.9
1,193,416	-		IAI47_05715	0.83	-0.3
1,193,416	-		IAI47_05715	0.83	-1.5
1,193,416	-		IAI47_05715	0.83	-0.2
1,193,419	+		IAI47_05715	0.83	+0.4
1,193,419	+		IAI47_05715	0.83	-0.6
1,193,419	+		IAI47_05715	0.83	-1.6
1,193,420	-		IAI47_05715	0.84	+1.8
1,193,420	-		IAI47_05715	0.84	+0.4
1,193,423	+		IAI47_05715	0.85	+0.8
1,193,424	-		IAI47_05715	0.85	-1.2
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1,193,542	-				+1.2
1,193,567	+				+2.1
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1,193,567	+				-1.6
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1,193,736	+		IAI47_05720	0.15	+0.1
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