Strain Fitness in Pantoea sp. MT58 around IAI47_05465

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,155,564	-		IAI47_05460	0.15	-2.3
1,155,564	-		IAI47_05460	0.15	-1.9
1,155,585	+		IAI47_05460	0.25	+1.4
1,155,585	+		IAI47_05460	0.25	-0.6
1,155,585	+		IAI47_05460	0.25	+1.7
1,155,586	-		IAI47_05460	0.25	-0.4
1,155,586	-		IAI47_05460	0.25	-0.1
1,155,586	-		IAI47_05460	0.25	+0.2
1,155,586	-		IAI47_05460	0.25	+0.4
1,155,621	+		IAI47_05460	0.41	+0.8
1,155,621	+		IAI47_05460	0.41	-0.6
1,155,622	-		IAI47_05460	0.42	-1.2
1,155,721	+		IAI47_05460	0.87	-1.8
1,155,721	+		IAI47_05460	0.87	+0.0
1,155,721	+		IAI47_05460	0.87	+0.2
1,155,721	+		IAI47_05460	0.87	+0.0
1,155,722	-		IAI47_05460	0.87	+0.4
1,155,725	+		IAI47_05460	0.89	-2.6
1,155,725	+		IAI47_05460	0.89	+0.1
1,155,725	+		IAI47_05460	0.89	-0.4
1,155,726	-		IAI47_05460	0.89	-1.2
1,155,726	-		IAI47_05460	0.89	+1.0
1,155,726	-		IAI47_05460	0.89	-0.9
1,155,726	-		IAI47_05460	0.89	+1.0
1,155,747	+				+1.6
1,155,747	+				-0.6
1,155,747	+				-0.4
1,155,748	-				-0.3
1,155,748	-				+0.3
1,155,778	+				+0.3
1,155,778	+				+1.4
1,155,778	+				+0.0
1,155,779	-				+0.4
1,155,779	-				+0.1
1,155,850	+				-0.3
1,155,850	+				+0.4
1,155,851	-				-0.8
1,155,851	-				-0.9
1,155,864	-				-1.2
1,155,918	-		IAI47_05465	0.14	-3.2
1,155,948	-		IAI47_05465	0.17	-2.6
1,155,948	-		IAI47_05465	0.17	-1.9
1,156,023	-		IAI47_05465	0.24	-0.9
1,156,110	-		IAI47_05465	0.33	-1.2
1,156,338	-		IAI47_05465	0.55	+0.4
1,156,371	-		IAI47_05465	0.58	-2.6
1,156,375	-		IAI47_05465	0.59	-0.6
1,156,375	-		IAI47_05465	0.59	-1.2
1,156,375	-		IAI47_05465	0.59	-1.2
1,156,375	-		IAI47_05465	0.59	+0.4
1,156,437	-		IAI47_05465	0.65	-1.5
1,156,437	-		IAI47_05465	0.65	-3.0
1,156,443	-		IAI47_05465	0.65	-1.6
1,156,491	-		IAI47_05465	0.70	-0.6
1,156,584	-		IAI47_05465	0.79	-1.6
1,156,584	-		IAI47_05465	0.79	-2.4
1,156,584	-		IAI47_05465	0.79	-1.2
1,156,584	-		IAI47_05465	0.79	-1.9
1,156,663	-		IAI47_05465	0.87	-0.8
1,156,663	-		IAI47_05465	0.87	-3.3
1,156,663	-		IAI47_05465	0.87	-1.2
1,156,672	-		IAI47_05465	0.88	-2.4
1,156,709	-				-1.2
1,156,709	-				-1.2
1,156,709	-				+0.8
1,156,783	-				-0.6
1,156,797	+				-1.2
1,156,819	+				+0.4
1,156,819	+				-0.3
1,156,876	-				-0.4
1,156,876	-				-1.2
1,156,897	+				-2.5
1,156,921	+				-0.5
1,156,922	-				+1.4
1,156,937	+				+0.9
1,156,937	+				-0.3
1,156,937	+				+2.8
1,156,937	+				+0.8
1,156,937	+				-0.4
1,156,937	+				-0.2
1,156,937	+				-0.7
1,156,938	-				-1.6
1,156,938	-				-0.2
1,156,938	-				-0.4
1,156,938	-				-1.3
1,156,938	-				+0.3
1,156,938	-				-1.0
1,156,968	+				+0.4
1,156,968	+				-1.6
1,156,968	+				+2.0
1,156,969	-				+0.1
1,156,969	-				+0.8
1,156,999	+		IAI47_05470	0.12	-1.2
1,156,999	+		IAI47_05470	0.12	+0.2
1,156,999	+		IAI47_05470	0.12	-0.2
1,156,999	+		IAI47_05470	0.12	-2.7
1,157,000	-		IAI47_05470	0.12	+1.0
1,157,002	+		IAI47_05470	0.12	-0.2
1,157,003	-		IAI47_05470	0.12	-2.2
1,157,003	-		IAI47_05470	0.12	+0.4
1,157,003	-		IAI47_05470	0.12	-1.9
1,157,003	-		IAI47_05470	0.12	-1.7
1,157,122	+		IAI47_05470	0.25	-1.2
1,157,122	+		IAI47_05470	0.25	-0.4
1,157,123	-		IAI47_05470	0.25	+0.0
1,157,137	+		IAI47_05470	0.27	+0.9
1,157,209	+		IAI47_05470	0.35	-1.2
1,157,209	+		IAI47_05470	0.35	+2.1
1,157,209	+		IAI47_05470	0.35	+0.3
1,157,209	+		IAI47_05470	0.35	+1.4
1,157,210	-		IAI47_05470	0.35	+0.8
1,157,210	-		IAI47_05470	0.35	-0.9
1,157,210	-		IAI47_05470	0.35	-1.4
1,157,210	-		IAI47_05470	0.35	-0.4
1,157,210	-		IAI47_05470	0.35	-2.4
1,157,262	+		IAI47_05470	0.40	+2.2
1,157,262	+		IAI47_05470	0.40	+0.1
1,157,262	+		IAI47_05470	0.40	-1.1
1,157,263	-		IAI47_05470	0.41	+0.8
1,157,305	+		IAI47_05470	0.45	-0.2
1,157,306	-		IAI47_05470	0.45	-1.6
1,157,362	+		IAI47_05470	0.51	+1.4
1,157,362	+		IAI47_05470	0.51	+0.6
1,157,480	+		IAI47_05470	0.64	+0.1
1,157,481	-		IAI47_05470	0.64	-0.5
1,157,586	+		IAI47_05470	0.76	-1.2
1,157,586	+		IAI47_05470	0.76	-1.2
1,157,587	-		IAI47_05470	0.76	+0.5
1,157,587	-		IAI47_05470	0.76	-0.6
1,157,587	-		IAI47_05470	0.76	+3.0
1,157,587	-		IAI47_05470	0.76	+1.0
1,157,608	+		IAI47_05470	0.78	-0.7
1,157,608	+		IAI47_05470	0.78	-2.7
1,157,608	+		IAI47_05470	0.78	-0.7
1,157,608	+		IAI47_05470	0.78	-0.0
1,157,608	+		IAI47_05470	0.78	+0.4
1,157,609	-		IAI47_05470	0.78	-0.9
1,157,609	-		IAI47_05470	0.78	+0.7
1,157,609	-		IAI47_05470	0.78	+1.7
1,157,609	-		IAI47_05470	0.78	-0.2
1,157,609	-		IAI47_05470	0.78	-1.7
1,157,609	-		IAI47_05470	0.78	+0.8
1,157,628	+		IAI47_05470	0.80	-0.6
1,157,653	+		IAI47_05470	0.83	-0.2
1,157,653	+		IAI47_05470	0.83	+1.2
1,157,653	+		IAI47_05470	0.83	-0.8
1,157,653	+		IAI47_05470	0.83	-0.2
1,157,654	-		IAI47_05470	0.83	+1.6
1,157,654	-		IAI47_05470	0.83	+0.8
1,157,654	-		IAI47_05470	0.83	-0.4
1,157,708	-		IAI47_05470	0.89	-0.8
1,157,708	-		IAI47_05470	0.89	+0.4