Strain Fitness in Pantoea sp. MT58 around IAI47_05290

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
1,117,617	+		IAI47_05285	0.57	+0.2
1,117,664	+		IAI47_05285	0.59	-1.3
1,117,700	-		IAI47_05285	0.61	-0.9
1,117,700	-		IAI47_05285	0.61	-1.3
1,117,700	-		IAI47_05285	0.61	+0.3
1,117,700	-		IAI47_05285	0.61	+1.9
1,117,950	+		IAI47_05285	0.74	-0.6
1,117,950	+		IAI47_05285	0.74	+1.8
1,117,950	+		IAI47_05285	0.74	-0.2
1,117,950	+		IAI47_05285	0.74	-0.3
1,117,950	+		IAI47_05285	0.74	-0.2
1,117,951	-		IAI47_05285	0.74	+0.4
1,117,951	-		IAI47_05285	0.74	+1.4
1,117,951	-		IAI47_05285	0.74	+0.2
1,117,951	-		IAI47_05285	0.74	-1.2
1,117,951	-		IAI47_05285	0.74	-1.7
1,117,971	+		IAI47_05285	0.75	-0.2
1,118,012	+		IAI47_05285	0.77	+0.4
1,118,012	+		IAI47_05285	0.77	-0.8
1,118,026	+		IAI47_05285	0.78	-0.4
1,118,026	+		IAI47_05285	0.78	-0.3
1,118,027	-		IAI47_05285	0.78	-0.1
1,118,058	+		IAI47_05285	0.79	-0.1
1,118,058	+		IAI47_05285	0.79	+0.8
1,118,059	-		IAI47_05285	0.79	-1.2
1,118,059	-		IAI47_05285	0.79	+0.3
1,118,073	-		IAI47_05285	0.80	+1.4
1,118,073	-		IAI47_05285	0.80	+1.3
1,118,104	+		IAI47_05285	0.82	-1.2
1,118,159	+		IAI47_05285	0.85	+0.8
1,118,160	-		IAI47_05285	0.85	-0.9
1,118,160	-		IAI47_05285	0.85	+0.4
1,118,160	-		IAI47_05285	0.85	-0.4
1,118,160	-		IAI47_05285	0.85	-0.2
1,118,195	+		IAI47_05285	0.86	+2.5
1,118,195	+		IAI47_05285	0.86	-0.2
1,118,203	+		IAI47_05285	0.87	-0.9
1,118,203	+		IAI47_05285	0.87	-1.6
1,118,204	-		IAI47_05285	0.87	+1.0
1,118,204	-		IAI47_05285	0.87	-0.4
1,118,216	+		IAI47_05285	0.88	-1.6
1,118,216	+		IAI47_05285	0.88	+1.3
1,118,217	-		IAI47_05285	0.88	-0.6
1,118,217	-		IAI47_05285	0.88	-0.9
1,118,217	-		IAI47_05285	0.88	-0.0
1,118,217	-		IAI47_05285	0.88	-1.4
1,118,217	-		IAI47_05285	0.88	+0.6
1,118,318	-				-1.0
1,118,350	+				+1.2
1,118,387	+				-0.2
1,118,407	+				-1.9
1,118,407	+				+2.2
1,118,407	+				+0.9
1,118,408	-				+0.0
1,118,408	-				-0.3
1,118,408	-				-0.6
1,118,502	-				+0.1
1,118,532	-				+1.6
1,118,532	-				+1.4
1,118,569	+				+0.0
1,118,569	+				+1.2
1,118,569	+				+0.8
1,118,570	-				-0.2
1,118,570	-				-0.0
1,118,570	-				+1.0
1,118,570	-				+0.8
1,118,573	+				+1.0
1,118,573	+				+0.1
1,118,574	-				+0.8
1,118,574	-				-1.7
1,118,574	-				-1.5
1,118,593	-				+0.2
1,118,593	-				-0.2
1,118,593	-				-0.5
1,118,617	+				+0.4
1,118,617	+				+1.2
1,118,617	+				-0.5
1,118,763	+		IAI47_05290	0.30	-0.6
1,118,763	+		IAI47_05290	0.30	-1.4
1,118,763	+		IAI47_05290	0.30	-0.6
1,118,764	-		IAI47_05290	0.30	-0.6
1,118,858	+		IAI47_05290	0.44	-2.4
1,118,858	+		IAI47_05290	0.44	+0.3
1,118,858	+		IAI47_05290	0.44	-0.9
1,118,859	-		IAI47_05290	0.44	+0.2
1,118,883	+		IAI47_05290	0.48	+1.4
1,118,883	+		IAI47_05290	0.48	-1.2
1,118,884	-		IAI47_05290	0.48	+2.0
1,118,884	-		IAI47_05290	0.48	+0.4
1,118,884	-		IAI47_05290	0.48	-0.4
1,118,884	-		IAI47_05290	0.48	+0.8
1,118,952	+		IAI47_05290	0.58	-0.6
1,118,952	+		IAI47_05290	0.58	-0.6
1,119,010	+		IAI47_05290	0.67	-1.7
1,119,010	+		IAI47_05290	0.67	-0.5
1,119,010	+		IAI47_05290	0.67	-0.7
1,119,011	-		IAI47_05290	0.67	+0.0
1,119,011	-		IAI47_05290	0.67	-1.5
1,119,011	-		IAI47_05290	0.67	-0.6
1,119,159	+		IAI47_05290	0.88	-1.1
1,119,159	+		IAI47_05290	0.88	+3.0
1,119,159	+		IAI47_05290	0.88	-0.8
1,119,159	+		IAI47_05290	0.88	+1.2
1,119,159	+		IAI47_05290	0.88	+0.1
1,119,160	-		IAI47_05290	0.89	-1.0
1,119,160	-		IAI47_05290	0.89	-0.7
1,119,160	-		IAI47_05290	0.89	-0.3
1,119,160	-		IAI47_05290	0.89	+0.2
1,119,160	-		IAI47_05290	0.89	-0.8
1,119,160	-		IAI47_05290	0.89	-0.6
1,119,160	-		IAI47_05290	0.89	-1.0
1,119,160	-		IAI47_05290	0.89	+0.2
1,119,235	+				+0.2
1,119,235	+				+1.4
1,119,236	-				+2.0
1,119,271	-				+0.7
1,119,271	-				+0.1
1,119,271	-				-1.4
1,119,290	-		IAI47_05295	0.11	-1.9
1,119,307	+		IAI47_05295	0.20	-0.3
1,119,307	+		IAI47_05295	0.20	-0.4
1,119,307	+		IAI47_05295	0.20	-1.6
1,119,308	-		IAI47_05295	0.21	+1.9
1,119,308	-		IAI47_05295	0.21	-0.2
1,119,347	-		IAI47_05295	0.41	+0.7
1,119,349	-		IAI47_05295	0.42	+0.2
1,119,386	-		IAI47_05295	0.62	-0.8
1,119,387	+		IAI47_05295	0.62	-0.6
1,119,388	-		IAI47_05295	0.63	-0.0
1,119,388	-		IAI47_05295	0.63	+0.7
1,119,438	+		IAI47_05295	0.89	-2.0
1,119,439	-				-0.8
1,119,439	-				-0.1
1,119,449	-				-0.2
1,119,469	+				-0.7
1,119,470	-				+0.2