Strain Fitness in Pantoea sp. MT58 around IAI47_19665

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
161,535	+				-1.8
161,572	+		IAI47_19655	0.17	-0.8
161,572	+		IAI47_19655	0.17	+1.4
161,587	+		IAI47_19655	0.24	+1.1
161,587	+		IAI47_19655	0.24	-0.4
161,588	-		IAI47_19655	0.24	+0.7
161,588	-		IAI47_19655	0.24	+0.5
161,593	+		IAI47_19655	0.26	+0.4
161,593	+		IAI47_19655	0.26	-0.0
161,594	-		IAI47_19655	0.27	+1.6
161,600	+		IAI47_19655	0.29	+2.6
161,600	+		IAI47_19655	0.29	+0.6
161,601	-		IAI47_19655	0.30	-0.9
161,611	+		IAI47_19655	0.34	+0.5
161,638	-		IAI47_19655	0.46	+1.8
161,638	-		IAI47_19655	0.46	-0.8
161,638	-		IAI47_19655	0.46	+1.5
161,699	-		IAI47_19655	0.73	+1.4
161,699	-		IAI47_19655	0.73	-0.8
161,721	-		IAI47_19655	0.83	-0.3
161,721	-		IAI47_19655	0.83	+0.7
161,721	-		IAI47_19655	0.83	+1.2
161,723	+		IAI47_19655	0.84	-0.8
161,723	+		IAI47_19655	0.84	-0.6
161,723	+		IAI47_19655	0.84	-0.1
161,753	+				+0.5
161,753	+				-1.3
161,754	-				+1.2
161,754	-				-0.4
161,754	-				-0.1
161,754	-				-1.3
161,754	-				+2.7
161,779	-				-0.8
161,789	+				+1.0
161,789	+				+0.2
161,789	+				-2.8
161,789	+				-0.3
161,790	-				-0.3
161,790	-				+0.2
161,795	+				+0.2
161,795	+				-0.8
161,811	+				-0.1
161,812	-				-0.2
161,812	-				+0.2
161,816	+				+1.2
161,816	+				-1.0
161,816	+				+0.2
161,817	-				-1.8
161,817	-				-0.2
161,817	-				+0.3
161,817	-				+0.7
161,820	-				-2.1
161,820	-				-0.3
161,822	+				+0.5
161,823	-				+1.8
161,850	+				-0.8
161,850	+				+2.8
161,850	+				-0.5
161,851	-				-0.3
161,856	+				+1.8
161,857	-				-0.3
161,857	-				+3.7
161,868	+				-0.3
161,868	+				-0.8
161,868	+				-0.3
161,869	-				-0.8
161,869	-				-0.3
161,869	-				-0.3
161,869	-				+0.2
161,897	+				+1.0
161,897	+				-0.2
161,897	+				+0.1
161,897	+				+1.0
161,898	-				-1.3
161,898	-				-0.8
161,913	+				+0.2
161,913	+				-1.6
161,913	+				+0.6
161,950	+				+0.6
161,964	+				+0.6
161,987	+				-0.3
161,988	-				-0.1
161,996	+				+0.6
161,996	+				-0.2
161,997	-				+0.8
161,997	-				-0.0
162,057	+		IAI47_19660	0.22	-0.0
162,078	+		IAI47_19660	0.29	-0.8
162,078	+		IAI47_19660	0.29	-3.7
162,107	+		IAI47_19660	0.39	-0.1
162,108	-		IAI47_19660	0.39	-1.0
162,108	-		IAI47_19660	0.39	+1.1
162,110	+		IAI47_19660	0.39	+0.2
162,110	+		IAI47_19660	0.39	-0.9
162,110	+		IAI47_19660	0.39	-0.8
162,111	-		IAI47_19660	0.40	-0.4
162,111	-		IAI47_19660	0.40	+0.2
162,111	-		IAI47_19660	0.40	+0.9
162,111	-		IAI47_19660	0.40	+0.0
162,111	-		IAI47_19660	0.40	-0.0
162,129	-		IAI47_19660	0.46	+0.8
162,152	+		IAI47_19660	0.53	+0.8
162,153	-		IAI47_19660	0.53	+0.2
162,161	+		IAI47_19660	0.56	+0.2
162,215	+		IAI47_19660	0.73	+0.6
162,215	+		IAI47_19660	0.73	+1.7
162,294	+				-0.8
162,294	+				+1.8
162,295	-				+0.2
162,365	-				-1.6
162,369	+				+0.2
162,370	-				+1.2
162,373	+				-0.2
162,374	-				+0.4
162,374	-				+1.2
162,374	-				-0.3
162,374	-				+0.6
162,374	-				+3.0
162,383	-				+1.1
162,396	-				-1.8
162,404	+				+0.2
162,404	+				-1.0
162,405	-				+2.2
162,410	+				+0.1
162,421	+				+4.3
162,443	+				+3.7
162,455	+				+1.6
162,456	-				+0.0
162,456	-				+1.2
162,467	-				+1.7
162,467	-				+2.6
162,491	+				-0.2
162,491	+				-1.1
162,492	-				+1.2
162,494	+				-0.7
162,494	+				+1.0
162,495	-				-0.8
162,510	+				+0.5
162,510	+				-0.6
162,510	+				-1.1
162,511	-				+0.6
162,511	-				+0.2
162,511	-				+0.4
162,511	-				+0.1
162,511	-				-0.0
162,554	-				-0.9
162,554	-				-0.4
162,554	-				+1.2
162,554	-				+0.2
162,572	-				+1.4
162,642	+		IAI47_19665	0.14	+0.1
162,650	-		IAI47_19665	0.15	-0.4
162,652	+		IAI47_19665	0.15	+0.4
162,652	+		IAI47_19665	0.15	+0.4
162,652	+		IAI47_19665	0.15	-0.9
162,652	+		IAI47_19665	0.15	+0.4
162,652	+		IAI47_19665	0.15	+1.8
162,653	-		IAI47_19665	0.15	+0.2
162,653	-		IAI47_19665	0.15	-0.0
162,653	-		IAI47_19665	0.15	+1.4
162,653	-		IAI47_19665	0.15	-0.9
162,672	-		IAI47_19665	0.17	-1.7
162,799	+		IAI47_19665	0.29	-0.9
162,799	+		IAI47_19665	0.29	-0.2
162,799	+		IAI47_19665	0.29	+2.5
162,799	+		IAI47_19665	0.29	+0.2
162,800	-		IAI47_19665	0.29	-0.5
162,800	-		IAI47_19665	0.29	-1.8
162,800	-		IAI47_19665	0.29	+0.1
162,800	-		IAI47_19665	0.29	+1.2
162,800	-		IAI47_19665	0.29	+0.2
162,803	-		IAI47_19665	0.29	+0.1
162,803	-		IAI47_19665	0.29	-0.4
162,803	-		IAI47_19665	0.29	+0.3
162,867	+		IAI47_19665	0.35	-0.2
162,867	+		IAI47_19665	0.35	+4.4
162,884	-		IAI47_19665	0.36	+2.0
162,884	-		IAI47_19665	0.36	-1.3
162,928	+		IAI47_19665	0.40	-0.2
162,929	-		IAI47_19665	0.41	-0.9
162,977	+		IAI47_19665	0.45	-0.1
162,978	-		IAI47_19665	0.45	+0.4
163,006	+		IAI47_19665	0.48	-0.4
163,007	-		IAI47_19665	0.48	+0.2
163,007	-		IAI47_19665	0.48	-0.1
163,007	-		IAI47_19665	0.48	-0.8
163,007	-		IAI47_19665	0.48	-0.5
163,007	-		IAI47_19665	0.48	-1.0
163,051	+		IAI47_19665	0.52	-0.2
163,052	-		IAI47_19665	0.52	+0.2
163,052	-		IAI47_19665	0.52	-0.2
163,052	-		IAI47_19665	0.52	+1.2
163,052	-		IAI47_19665	0.52	-0.6
163,052	-		IAI47_19665	0.52	+1.2
163,147	+		IAI47_19665	0.60	+0.7
163,158	+		IAI47_19665	0.61	+1.8
163,255	+		IAI47_19665	0.70	+0.7
163,256	-		IAI47_19665	0.70	-0.9
163,256	-		IAI47_19665	0.70	+3.2
163,258	+		IAI47_19665	0.71	+2.3
163,259	-		IAI47_19665	0.71	-1.8
163,259	-		IAI47_19665	0.71	+1.6
163,276	+		IAI47_19665	0.72	-0.9
163,276	+		IAI47_19665	0.72	-0.9
163,276	+		IAI47_19665	0.72	-0.3
163,276	+		IAI47_19665	0.72	-0.2
163,305	+		IAI47_19665	0.75	-1.0
163,305	+		IAI47_19665	0.75	+0.4
163,306	-		IAI47_19665	0.75	+1.8
163,306	-		IAI47_19665	0.75	-0.5
163,343	-		IAI47_19665	0.78	+0.4
163,363	+		IAI47_19665	0.80	-1.8
163,363	+		IAI47_19665	0.80	-0.5
163,363	+		IAI47_19665	0.80	-1.1
163,363	+		IAI47_19665	0.80	+1.5
163,493	+				-0.2
163,519	+				+0.6
163,520	-				-2.1
163,524	+				+2.2
163,524	+				+1.4
163,524	+				+0.3
163,524	+				-1.7
163,524	+				-0.6
163,524	+				-0.4
163,524	+				-0.1
163,525	-				-1.6
163,525	-				+1.7
163,525	-				+1.3
163,525	-				+2.2
163,525	-				-1.0
163,577	+				+0.8
163,577	+				+1.2
163,577	+				+0.8
163,578	-				-0.0
163,578	-				-0.4
163,617	+				-0.4
163,771	+		IAI47_19670	0.20	-0.3
163,846	-		IAI47_19670	0.29	+2.4
163,872	+		IAI47_19670	0.33	+2.2
163,899	+		IAI47_19670	0.36	+0.1
163,900	-		IAI47_19670	0.36	+2.8
163,964	+		IAI47_19670	0.44	-0.9
163,964	+		IAI47_19670	0.44	-0.8
163,964	+		IAI47_19670	0.44	-1.5
163,965	-		IAI47_19670	0.44	+2.0
163,965	-		IAI47_19670	0.44	+0.8
163,965	-		IAI47_19670	0.44	-0.6
163,965	-		IAI47_19670	0.44	-0.3
163,965	-		IAI47_19670	0.44	+0.9
163,965	-		IAI47_19670	0.44	+1.7
163,965	-		IAI47_19670	0.44	+0.0
163,991	-		IAI47_19670	0.48	+0.2
163,991	-		IAI47_19670	0.48	+1.2
163,993	+		IAI47_19670	0.48	+0.7
163,994	-		IAI47_19670	0.48	-0.8
164,013	+		IAI47_19670	0.51	-1.2
164,013	+		IAI47_19670	0.51	+3.0
164,013	+		IAI47_19670	0.51	-0.3
164,013	+		IAI47_19670	0.51	-0.1
164,014	-		IAI47_19670	0.51	-1.9
164,014	-		IAI47_19670	0.51	+0.2
164,014	-		IAI47_19670	0.51	+2.1
164,014	-		IAI47_19670	0.51	-0.5
164,064	+		IAI47_19670	0.57	+0.7
164,064	+		IAI47_19670	0.57	+3.0
164,064	+		IAI47_19670	0.57	-0.5
164,064	+		IAI47_19670	0.57	+0.7
164,064	+		IAI47_19670	0.57	+0.2
164,064	+		IAI47_19670	0.57	+0.1
164,064	+		IAI47_19670	0.57	+0.7
164,064	+		IAI47_19670	0.57	-0.2
164,065	-		IAI47_19670	0.57	-0.1
164,065	-		IAI47_19670	0.57	-1.1
164,126	-		IAI47_19670	0.65	-3.1
164,137	+		IAI47_19670	0.66	+0.7
164,147	-		IAI47_19670	0.68	-1.0
164,147	-		IAI47_19670	0.68	+0.9
164,147	-		IAI47_19670	0.68	+0.8
164,168	+		IAI47_19670	0.70	+0.2
164,168	+		IAI47_19670	0.70	+0.7
164,168	+		IAI47_19670	0.70	+0.2
164,168	+		IAI47_19670	0.70	-0.2
164,168	+		IAI47_19670	0.70	-0.0
164,169	-		IAI47_19670	0.70	+0.2
164,169	-		IAI47_19670	0.70	-0.3
164,180	-		IAI47_19670	0.72	+0.6
164,203	+		IAI47_19670	0.75	+0.2
164,204	-		IAI47_19670	0.75	+1.0
164,206	-		IAI47_19670	0.75	-0.1
164,240	-		IAI47_19670	0.79	+0.1
164,240	-		IAI47_19670	0.79	-0.2
164,240	-		IAI47_19670	0.79	-0.3
164,269	+		IAI47_19670	0.83	+2.2
164,269	+		IAI47_19670	0.83	-0.2
164,270	-		IAI47_19670	0.83	-0.2
164,327	+				-1.6
164,384	+				-0.3
164,385	-				-0.7
164,385	-				+1.0
164,390	-				-0.5
164,390	-				+1.0
164,442	+		IAI47_19675	0.18	-2.9
164,442	+		IAI47_19675	0.18	+0.5
164,442	+		IAI47_19675	0.18	+0.0
164,442	+		IAI47_19675	0.18	+0.2
164,451	+		IAI47_19675	0.22	-0.2
164,545	-		IAI47_19675	0.60	+0.4