Strain Fitness in Pantoea sp. MT58 around IAI47_18370

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
3,908,962	+				+0.1
3,908,962	+				+0.7
3,908,962	+				-0.3
3,908,963	-				-0.7
3,908,966	+				+1.2
3,908,966	+				-0.1
3,908,966	+				-0.2
3,908,966	+				-0.6
3,908,966	+				+0.3
3,908,966	+				-1.2
3,908,966	+				-0.2
3,908,967	-		IAI47_18365	0.10	-0.2
3,908,975	-		IAI47_18365	0.11	-1.0
3,908,975	-		IAI47_18365	0.11	+0.0
3,908,976	+		IAI47_18365	0.11	-0.9
3,908,976	+		IAI47_18365	0.11	-0.1
3,908,976	+		IAI47_18365	0.11	-0.6
3,908,976	+		IAI47_18365	0.11	-1.3
3,908,976	+		IAI47_18365	0.11	+0.1
3,908,976	+		IAI47_18365	0.11	-0.6
3,908,976	+		IAI47_18365	0.11	+0.4
3,908,977	-		IAI47_18365	0.11	-1.2
3,908,977	-		IAI47_18365	0.11	+3.2
3,908,977	-		IAI47_18365	0.11	+0.0
3,908,977	-		IAI47_18365	0.11	-0.4
3,908,977	-		IAI47_18365	0.11	-1.0
3,908,977	-		IAI47_18365	0.11	-0.6
3,908,977	-		IAI47_18365	0.11	-0.4
3,908,977	-		IAI47_18365	0.11	-1.1
3,908,999	-		IAI47_18365	0.14	-0.6
3,909,003	+		IAI47_18365	0.14	+0.5
3,909,003	+		IAI47_18365	0.14	+0.2
3,909,003	+		IAI47_18365	0.14	+0.9
3,909,003	+		IAI47_18365	0.14	-0.3
3,909,004	-		IAI47_18365	0.14	+0.7
3,909,004	-		IAI47_18365	0.14	-1.1
3,909,004	-		IAI47_18365	0.14	-0.1
3,909,031	-		IAI47_18365	0.17	-1.6
3,909,046	+		IAI47_18365	0.19	+0.1
3,909,046	+		IAI47_18365	0.19	+1.4
3,909,046	+		IAI47_18365	0.19	+1.0
3,909,046	+		IAI47_18365	0.19	+0.2
3,909,046	+		IAI47_18365	0.19	-1.0
3,909,047	-		IAI47_18365	0.19	+0.1
3,909,047	-		IAI47_18365	0.19	+0.6
3,909,047	-		IAI47_18365	0.19	-1.4
3,909,047	-		IAI47_18365	0.19	+1.2
3,909,048	+		IAI47_18365	0.19	+0.3
3,909,048	+		IAI47_18365	0.19	+0.4
3,909,048	+		IAI47_18365	0.19	+0.4
3,909,048	+		IAI47_18365	0.19	-0.4
3,909,048	+		IAI47_18365	0.19	+0.3
3,909,048	+		IAI47_18365	0.19	-1.2
3,909,048	+		IAI47_18365	0.19	+0.3
3,909,048	+		IAI47_18365	0.19	+0.6
3,909,048	+		IAI47_18365	0.19	+0.3
3,909,049	-		IAI47_18365	0.19	+1.0
3,909,049	-		IAI47_18365	0.19	+0.4
3,909,049	-		IAI47_18365	0.19	+0.1
3,909,049	-		IAI47_18365	0.19	+0.9
3,909,049	-		IAI47_18365	0.19	+0.9
3,909,049	-		IAI47_18365	0.19	+1.0
3,909,049	-		IAI47_18365	0.19	-0.2
3,909,049	-		IAI47_18365	0.19	-0.5
3,909,049	-		IAI47_18365	0.19	-0.2
3,909,049	-		IAI47_18365	0.19	-0.3
3,909,071	-		IAI47_18365	0.22	-0.1
3,909,071	-		IAI47_18365	0.22	-1.0
3,909,105	+		IAI47_18365	0.26	-1.2
3,909,105	+		IAI47_18365	0.26	+0.4
3,909,105	+		IAI47_18365	0.26	+0.0
3,909,106	-		IAI47_18365	0.26	+0.3
3,909,106	-		IAI47_18365	0.26	+0.4
3,909,106	-		IAI47_18365	0.26	+1.3
3,909,106	-		IAI47_18365	0.26	+1.4
3,909,108	+		IAI47_18365	0.26	+0.4
3,909,108	+		IAI47_18365	0.26	+0.7
3,909,108	+		IAI47_18365	0.26	+0.9
3,909,109	-		IAI47_18365	0.26	-0.9
3,909,109	-		IAI47_18365	0.26	-1.6
3,909,117	+		IAI47_18365	0.27	-0.8
3,909,117	+		IAI47_18365	0.27	-0.1
3,909,117	+		IAI47_18365	0.27	+0.8
3,909,117	+		IAI47_18365	0.27	+1.4
3,909,117	+		IAI47_18365	0.27	-0.2
3,909,118	-		IAI47_18365	0.27	+0.4
3,909,118	-		IAI47_18365	0.27	-2.2
3,909,118	-		IAI47_18365	0.27	+0.7
3,909,118	-		IAI47_18365	0.27	+1.1
3,909,118	-		IAI47_18365	0.27	+0.4
3,909,118	-		IAI47_18365	0.27	-3.0
3,909,118	-		IAI47_18365	0.27	-1.5
3,909,118	-		IAI47_18365	0.27	-0.3
3,909,118	-		IAI47_18365	0.27	-0.6
3,909,118	-		IAI47_18365	0.27	-0.1
3,909,118	-		IAI47_18365	0.27	+0.9
3,909,127	+		IAI47_18365	0.28	-2.0
3,909,127	+		IAI47_18365	0.28	+0.4
3,909,128	-		IAI47_18365	0.28	+1.3
3,909,136	+		IAI47_18365	0.29	+0.4
3,909,137	-		IAI47_18365	0.29	+0.8
3,909,137	-		IAI47_18365	0.29	-1.6
3,909,137	-		IAI47_18365	0.29	-0.3
3,909,137	-		IAI47_18365	0.29	-0.7
3,909,169	-		IAI47_18365	0.33	+0.7
3,909,222	+		IAI47_18365	0.39	+0.0
3,909,223	-		IAI47_18365	0.39	-1.7
3,909,223	-		IAI47_18365	0.39	+0.4
3,909,223	-		IAI47_18365	0.39	-0.2
3,909,299	+		IAI47_18365	0.48	-0.6
3,909,299	+		IAI47_18365	0.48	-0.9
3,909,321	+		IAI47_18365	0.50	+0.1
3,909,321	+		IAI47_18365	0.50	+0.0
3,909,322	-		IAI47_18365	0.50	+0.0
3,909,357	+		IAI47_18365	0.54	+0.8
3,909,357	+		IAI47_18365	0.54	+1.3
3,909,357	+		IAI47_18365	0.54	-0.8
3,909,357	+		IAI47_18365	0.54	+0.2
3,909,357	+		IAI47_18365	0.54	-0.9
3,909,357	+		IAI47_18365	0.54	+2.0
3,909,357	+		IAI47_18365	0.54	-0.7
3,909,357	+		IAI47_18365	0.54	+0.2
3,909,357	+		IAI47_18365	0.54	+1.4
3,909,357	+		IAI47_18365	0.54	+0.4
3,909,357	+		IAI47_18365	0.54	-0.0
3,909,357	+		IAI47_18365	0.54	-0.8
3,909,358	-		IAI47_18365	0.54	+0.9
3,909,358	-		IAI47_18365	0.54	+0.9
3,909,358	-		IAI47_18365	0.54	-0.7
3,909,358	-		IAI47_18365	0.54	+0.8
3,909,358	-		IAI47_18365	0.54	+2.2
3,909,358	-		IAI47_18365	0.54	-0.8
3,909,358	-		IAI47_18365	0.54	-1.3
3,909,358	-		IAI47_18365	0.54	-1.4
3,909,358	-		IAI47_18365	0.54	-0.6
3,909,421	+		IAI47_18365	0.62	-1.0
3,909,421	+		IAI47_18365	0.62	+0.1
3,909,421	+		IAI47_18365	0.62	-0.4
3,909,421	+		IAI47_18365	0.62	-0.5
3,909,421	+		IAI47_18365	0.62	+0.9
3,909,421	+		IAI47_18365	0.62	+0.2
3,909,421	+		IAI47_18365	0.62	+0.4
3,909,422	-		IAI47_18365	0.62	+1.1
3,909,422	-		IAI47_18365	0.62	-1.4
3,909,422	-		IAI47_18365	0.62	-0.9
3,909,422	-		IAI47_18365	0.62	-1.4
3,909,422	-		IAI47_18365	0.62	-1.6
3,909,422	-		IAI47_18365	0.62	+1.8
3,909,423	+		IAI47_18365	0.62	+0.1
3,909,423	+		IAI47_18365	0.62	+1.0
3,909,423	+		IAI47_18365	0.62	+0.2
3,909,423	+		IAI47_18365	0.62	-1.2
3,909,423	+		IAI47_18365	0.62	+0.4
3,909,423	+		IAI47_18365	0.62	-1.2
3,909,423	+		IAI47_18365	0.62	-0.2
3,909,424	-		IAI47_18365	0.62	+0.0
3,909,424	-		IAI47_18365	0.62	-1.2
3,909,424	-		IAI47_18365	0.62	+0.4
3,909,424	-		IAI47_18365	0.62	+1.0
3,909,424	-		IAI47_18365	0.62	-0.1
3,909,424	-		IAI47_18365	0.62	+1.4
3,909,508	+		IAI47_18365	0.72	+1.6
3,909,509	-		IAI47_18365	0.72	-0.6
3,909,509	-		IAI47_18365	0.72	-1.2
3,909,529	+		IAI47_18365	0.74	+1.1
3,909,529	+		IAI47_18365	0.74	+0.4
3,909,529	+		IAI47_18365	0.74	-1.3
3,909,529	+		IAI47_18365	0.74	+0.6
3,909,530	-		IAI47_18365	0.74	-1.2
3,909,530	-		IAI47_18365	0.74	+0.7
3,909,530	-		IAI47_18365	0.74	+0.6
3,909,531	+		IAI47_18365	0.74	-1.2
3,909,531	+		IAI47_18365	0.74	-0.8
3,909,531	+		IAI47_18365	0.74	+1.5
3,909,531	+		IAI47_18365	0.74	+0.4
3,909,531	+		IAI47_18365	0.74	+0.3
3,909,531	+		IAI47_18365	0.74	+0.2
3,909,532	-		IAI47_18365	0.74	+0.2
3,909,532	-		IAI47_18365	0.74	-0.3
3,909,532	-		IAI47_18365	0.74	+2.9
3,909,532	-		IAI47_18365	0.74	+1.1
3,909,532	-		IAI47_18365	0.74	+0.1
3,909,551	-		IAI47_18365	0.76	-1.9
3,909,566	-		IAI47_18365	0.78	-0.6
3,909,566	-		IAI47_18365	0.78	+0.4
3,909,567	+		IAI47_18365	0.78	-1.2
3,909,567	+		IAI47_18365	0.78	+0.8
3,909,567	+		IAI47_18365	0.78	-0.2
3,909,567	+		IAI47_18365	0.78	-0.2
3,909,567	+		IAI47_18365	0.78	-1.1
3,909,567	+		IAI47_18365	0.78	+2.6
3,909,567	+		IAI47_18365	0.78	+0.7
3,909,568	-		IAI47_18365	0.78	+0.6
3,909,568	-		IAI47_18365	0.78	-1.3
3,909,568	-		IAI47_18365	0.78	+1.0
3,909,568	-		IAI47_18365	0.78	-1.5
3,909,568	-		IAI47_18365	0.78	+1.0
3,909,568	-		IAI47_18365	0.78	-0.6
3,909,568	-		IAI47_18365	0.78	+1.0
3,909,573	+		IAI47_18365	0.79	-0.5
3,909,573	+		IAI47_18365	0.79	+1.7
3,909,573	+		IAI47_18365	0.79	-1.3
3,909,573	+		IAI47_18365	0.79	-1.8
3,909,573	+		IAI47_18365	0.79	-0.2
3,909,573	+		IAI47_18365	0.79	+0.3
3,909,573	+		IAI47_18365	0.79	+0.1
3,909,573	+		IAI47_18365	0.79	-0.6
3,909,573	+		IAI47_18365	0.79	-0.6
3,909,574	-		IAI47_18365	0.79	+1.4
3,909,574	-		IAI47_18365	0.79	+1.1
3,909,582	+		IAI47_18365	0.80	+1.7
3,909,582	+		IAI47_18365	0.80	+1.4
3,909,583	-		IAI47_18365	0.80	+0.2
3,909,583	-		IAI47_18365	0.80	+1.0
3,909,583	-		IAI47_18365	0.80	-0.3
3,909,583	-		IAI47_18365	0.80	+0.1
3,909,583	-		IAI47_18365	0.80	-0.6
3,909,583	-		IAI47_18365	0.80	-0.3
3,909,583	-		IAI47_18365	0.80	+1.2
3,909,583	-		IAI47_18365	0.80	+3.2
3,909,595	-		IAI47_18365	0.81	+1.2
3,909,595	-		IAI47_18365	0.81	-0.3
3,909,600	+		IAI47_18365	0.82	-0.2
3,909,601	-		IAI47_18365	0.82	-1.5
3,909,601	-		IAI47_18365	0.82	+1.2
3,909,638	-		IAI47_18365	0.86	-0.5
3,909,638	-		IAI47_18365	0.86	-1.6
3,909,638	-		IAI47_18365	0.86	-0.2
3,909,643	+		IAI47_18365	0.87	+1.1
3,909,643	+		IAI47_18365	0.87	-0.4
3,909,643	+		IAI47_18365	0.87	+1.0
3,909,643	+		IAI47_18365	0.87	+0.7
3,909,644	-		IAI47_18365	0.87	-0.3
3,909,644	-		IAI47_18365	0.87	-1.2
3,909,644	-		IAI47_18365	0.87	-0.4
3,909,644	-		IAI47_18365	0.87	-0.6
3,909,644	-		IAI47_18365	0.87	-0.6
3,909,682	+				-1.8
3,909,683	-				-0.1
3,909,719	+				+0.9
3,909,719	+				+0.4
3,909,719	+				-0.6
3,909,720	-				-0.2
3,909,751	+				-1.9
3,909,751	+				+2.4
3,909,751	+				+2.0
3,909,752	-				-0.3
3,909,752	-				+0.7
3,909,752	-				-0.2
3,909,752	-				-0.2
3,909,752	-				-0.3
3,909,752	-				-1.2
3,909,757	+				+0.1
3,909,757	+				+0.8
3,909,757	+				-0.6
3,909,757	+				-0.3
3,909,757	+				+0.7
3,909,758	-				+0.0
3,909,758	-				+1.4
3,909,758	-				-1.6
3,909,782	+				+1.2
3,909,783	-				+1.7
3,909,783	-				-1.9
3,909,791	-				-0.5
3,909,807	+				+0.2
3,909,807	+				+0.4
3,909,808	-				+0.0
3,909,824	+				+0.7
3,909,824	+				+1.3
3,909,824	+				-0.6
3,909,825	-				+0.0
3,909,825	-				+1.2
3,909,825	-				+2.1
3,909,825	-				+0.2
3,909,862	-				-0.1
3,909,889	+				+1.4
3,909,889	+				+0.2
3,909,889	+				+1.4
3,909,889	+				-0.4
3,909,890	-				-0.6
3,909,890	-				+0.8
3,909,890	-				-0.2
3,909,890	-				-0.6
3,909,890	-				-0.9
3,909,890	-				+1.2
3,909,890	-				+0.4
3,909,890	-				+0.8
3,909,890	-				-1.2
3,909,890	-				+0.4
3,909,894	+				+1.2
3,909,894	+				+0.4
3,909,894	+				+1.4
3,909,894	+				-0.2
3,909,894	+				-0.6
3,909,894	+				+2.0
3,909,895	-				-0.6
3,909,895	-				-0.3
3,909,987	+				+2.1
3,909,987	+				+0.6
3,909,987	+				+0.8
3,909,987	+				+0.0
3,909,987	+				-1.0
3,909,988	-				-0.5
3,910,013	-		IAI47_18370	0.13	-0.6
3,910,026	+		IAI47_18370	0.16	+0.0
3,910,069	+		IAI47_18370	0.25	+0.6
3,910,069	+		IAI47_18370	0.25	+0.6
3,910,069	+		IAI47_18370	0.25	-0.2
3,910,069	+		IAI47_18370	0.25	+1.2
3,910,069	+		IAI47_18370	0.25	+1.0
3,910,070	-		IAI47_18370	0.25	-0.9
3,910,106	+		IAI47_18370	0.33	+1.2
3,910,106	+		IAI47_18370	0.33	+1.6
3,910,107	-		IAI47_18370	0.33	-0.4
3,910,107	-		IAI47_18370	0.33	+1.2
3,910,107	-		IAI47_18370	0.33	-0.4
3,910,107	-		IAI47_18370	0.33	-0.3
3,910,110	+		IAI47_18370	0.34	+2.3
3,910,110	+		IAI47_18370	0.34	+0.8
3,910,111	-		IAI47_18370	0.34	+0.0
3,910,154	+		IAI47_18370	0.43	+1.4
3,910,155	-		IAI47_18370	0.43	+0.4
3,910,188	+		IAI47_18370	0.50	+1.0
3,910,188	+		IAI47_18370	0.50	+1.0
3,910,188	+		IAI47_18370	0.50	+0.2
3,910,188	+		IAI47_18370	0.50	+0.7
3,910,188	+		IAI47_18370	0.50	+0.7
3,910,188	+		IAI47_18370	0.50	-0.5
3,910,188	+		IAI47_18370	0.50	-0.2
3,910,189	-		IAI47_18370	0.50	+2.7
3,910,189	-		IAI47_18370	0.50	-1.0
3,910,189	-		IAI47_18370	0.50	-0.2
3,910,263	+		IAI47_18370	0.66	+0.4
3,910,263	+		IAI47_18370	0.66	-0.3
3,910,263	+		IAI47_18370	0.66	+1.2
3,910,264	-		IAI47_18370	0.66	+1.7
3,910,264	-		IAI47_18370	0.66	+0.7
3,910,264	-		IAI47_18370	0.66	+0.2
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