Strain Fitness in Pantoea sp. MT58 around IAI47_17770

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
3,773,396	+		IAI47_17760	0.50	-0.0
3,773,396	+		IAI47_17760	0.50	-1.0
3,773,397	-		IAI47_17760	0.50	+0.5
3,773,397	-		IAI47_17760	0.50	-1.8
3,773,397	-		IAI47_17760	0.50	+0.1
3,773,436	+		IAI47_17760	0.56	+0.1
3,773,437	-		IAI47_17760	0.56	+0.4
3,773,437	-		IAI47_17760	0.56	-0.2
3,773,449	-		IAI47_17760	0.58	-0.9
3,773,460	-		IAI47_17760	0.59	-0.4
3,773,460	-		IAI47_17760	0.59	+1.4
3,773,520	+		IAI47_17760	0.68	-0.0
3,773,520	+		IAI47_17760	0.68	-2.6
3,773,640	+		IAI47_17760	0.86	+0.7
3,773,640	+		IAI47_17760	0.86	+0.4
3,773,640	+		IAI47_17760	0.86	-0.0
3,773,641	-		IAI47_17760	0.86	+0.4
3,773,641	-		IAI47_17760	0.86	-0.9
3,773,647	+		IAI47_17760	0.87	+1.0
3,773,763	+				-0.8
3,773,763	+				+2.4
3,773,763	+				-0.6
3,773,763	+				+0.8
3,773,763	+				+0.6
3,773,763	+				-1.9
3,773,763	+				+0.4
3,773,763	+				-0.4
3,773,763	+				-0.3
3,773,763	+				-0.9
3,773,763	+				+0.4
3,773,763	+				-1.8
3,773,763	+				+1.1
3,773,763	+				+1.3
3,773,763	+				-1.4
3,773,764	-				+1.8
3,773,764	-				-0.2
3,773,764	-				-0.2
3,773,764	-				-1.3
3,773,764	-				-0.2
3,773,764	-				-1.0
3,773,764	-				+1.0
3,773,764	-				+2.1
3,773,764	-				-0.2
3,773,764	-				-0.9
3,773,765	+				+0.4
3,773,765	+				-0.0
3,773,765	+				+1.5
3,773,765	+				+0.4
3,773,766	-				-0.1
3,773,766	-				+0.4
3,773,766	-				-2.0
3,773,779	+				-1.9
3,773,780	-				+0.4
3,773,785	+				-0.7
3,773,785	+				-1.6
3,773,786	-				-0.6
3,773,786	-				+0.1
3,773,791	+				-1.9
3,773,791	+				-0.8
3,773,791	+				+0.4
3,773,791	+				-0.3
3,773,791	+				-0.0
3,773,792	-				+0.9
3,773,792	-				+0.6
3,773,792	-				-0.5
3,773,792	-				-0.4
3,773,792	-				-0.6
3,773,792	-				+0.0
3,773,792	-				-1.9
3,773,814	-				+1.1
3,773,899	+		IAI47_17765	0.26	-0.0
3,773,941	+		IAI47_17765	0.35	+0.4
3,773,941	+		IAI47_17765	0.35	+0.2
3,773,941	+		IAI47_17765	0.35	+0.8
3,773,942	-		IAI47_17765	0.35	+1.4
3,773,942	-		IAI47_17765	0.35	+0.1
3,773,942	-		IAI47_17765	0.35	+0.0
3,773,947	+		IAI47_17765	0.36	+0.1
3,773,948	-		IAI47_17765	0.36	+2.1
3,774,001	+		IAI47_17765	0.47	+0.1
3,774,001	+		IAI47_17765	0.47	+0.4
3,774,001	+		IAI47_17765	0.47	+0.8
3,774,001	+		IAI47_17765	0.47	+0.4
3,774,001	+		IAI47_17765	0.47	+1.0
3,774,001	+		IAI47_17765	0.47	+0.4
3,774,001	+		IAI47_17765	0.47	+0.1
3,774,001	+		IAI47_17765	0.47	+0.3
3,774,001	+		IAI47_17765	0.47	-0.6
3,774,002	-		IAI47_17765	0.48	-0.2
3,774,002	-		IAI47_17765	0.48	-1.0
3,774,002	-		IAI47_17765	0.48	-1.4
3,774,002	-		IAI47_17765	0.48	-2.4
3,774,002	-		IAI47_17765	0.48	-0.4
3,774,002	-		IAI47_17765	0.48	-0.5
3,774,002	-		IAI47_17765	0.48	-1.2
3,774,002	-		IAI47_17765	0.48	+0.3
3,774,002	-		IAI47_17765	0.48	+0.7
3,774,002	-		IAI47_17765	0.48	-0.3
3,774,002	-		IAI47_17765	0.48	-0.3
3,774,002	-		IAI47_17765	0.48	+0.6
3,774,002	-		IAI47_17765	0.48	+0.4
3,774,002	-		IAI47_17765	0.48	+0.4
3,774,002	-		IAI47_17765	0.48	-0.1
3,774,002	-		IAI47_17765	0.48	+0.8
3,774,002	-		IAI47_17765	0.48	-0.6
3,774,019	+		IAI47_17765	0.51	+0.8
3,774,019	+		IAI47_17765	0.51	-0.4
3,774,020	-		IAI47_17765	0.51	-0.9
3,774,020	-		IAI47_17765	0.51	-2.5
3,774,020	-		IAI47_17765	0.51	-2.1
3,774,020	-		IAI47_17765	0.51	+0.9
3,774,020	-		IAI47_17765	0.51	+1.0
3,774,020	-		IAI47_17765	0.51	+0.1
3,774,080	-		IAI47_17765	0.64	-0.5
3,774,111	+		IAI47_17765	0.70	+1.4
3,774,166	-		IAI47_17765	0.81	+0.9
3,774,166	-		IAI47_17765	0.81	+0.4
3,774,166	-		IAI47_17765	0.81	+0.6
3,774,166	-		IAI47_17765	0.81	-1.1
3,774,166	-		IAI47_17765	0.81	+1.3
3,774,237	+				-0.2
3,774,238	-				+0.2
3,774,266	+				-0.4
3,774,289	+				-0.8
3,774,291	+				+0.1
3,774,292	-				-0.2
3,774,314	+				+0.8
3,774,325	+				+3.3
3,774,326	-				-1.2
3,774,335	+				-0.5
3,774,335	+				+0.4
3,774,336	-				-1.0
3,774,348	-				-0.3
3,774,413	+		IAI47_17770	0.13	+1.0
3,774,413	+		IAI47_17770	0.13	+0.4
3,774,414	-		IAI47_17770	0.13	+1.4
3,774,414	-		IAI47_17770	0.13	+0.2
3,774,414	-		IAI47_17770	0.13	+0.4
3,774,414	-		IAI47_17770	0.13	+0.4
3,774,476	+		IAI47_17770	0.28	-1.0
3,774,476	+		IAI47_17770	0.28	-0.2
3,774,476	+		IAI47_17770	0.28	-1.4
3,774,476	+		IAI47_17770	0.28	-0.2
3,774,476	+		IAI47_17770	0.28	+2.4
3,774,476	+		IAI47_17770	0.28	-1.2
3,774,476	+		IAI47_17770	0.28	-0.2
3,774,476	+		IAI47_17770	0.28	-0.3
3,774,476	+		IAI47_17770	0.28	+0.0
3,774,477	-		IAI47_17770	0.28	+0.4
3,774,477	-		IAI47_17770	0.28	-1.2
3,774,477	-		IAI47_17770	0.28	-2.3
3,774,477	-		IAI47_17770	0.28	+0.4
3,774,477	-		IAI47_17770	0.28	+2.5
3,774,477	-		IAI47_17770	0.28	+1.2
3,774,513	+		IAI47_17770	0.37	+0.3
3,774,513	+		IAI47_17770	0.37	-2.6
3,774,513	+		IAI47_17770	0.37	+0.7
3,774,514	-		IAI47_17770	0.37	-0.7
3,774,514	-		IAI47_17770	0.37	+0.7
3,774,514	-		IAI47_17770	0.37	-0.7
3,774,514	-		IAI47_17770	0.37	+1.2
3,774,515	+		IAI47_17770	0.37	+1.4
3,774,515	+		IAI47_17770	0.37	+0.4
3,774,515	+		IAI47_17770	0.37	+1.5
3,774,515	+		IAI47_17770	0.37	-2.4
3,774,515	+		IAI47_17770	0.37	+0.8
3,774,516	-		IAI47_17770	0.37	-1.2
3,774,516	-		IAI47_17770	0.37	-0.4
3,774,516	-		IAI47_17770	0.37	+0.8
3,774,581	+		IAI47_17770	0.53	+1.0
3,774,582	-		IAI47_17770	0.53	+0.4
3,774,594	+		IAI47_17770	0.56	+1.9
3,774,594	+		IAI47_17770	0.56	-0.0
3,774,594	+		IAI47_17770	0.56	-0.4
3,774,594	+		IAI47_17770	0.56	+1.0
3,774,595	-		IAI47_17770	0.56	+1.8
3,774,601	-		IAI47_17770	0.57	+0.4
3,774,601	-		IAI47_17770	0.57	-1.0
3,774,601	-		IAI47_17770	0.57	+1.6
3,774,601	-		IAI47_17770	0.57	+0.1
3,774,601	-		IAI47_17770	0.57	+0.3
3,774,601	-		IAI47_17770	0.57	+1.1
3,774,664	-		IAI47_17770	0.72	+1.7
3,774,720	+		IAI47_17770	0.85	-0.0
3,774,720	+		IAI47_17770	0.85	+1.0
3,774,722	+		IAI47_17770	0.86	+0.2
3,774,722	+		IAI47_17770	0.86	+0.8
3,774,723	-		IAI47_17770	0.86	-2.6
3,774,723	-		IAI47_17770	0.86	-0.5
3,774,737	+		IAI47_17770	0.89	+1.3
3,774,737	+		IAI47_17770	0.89	+0.2
3,774,738	-		IAI47_17770	0.89	-0.5
3,774,738	-		IAI47_17770	0.89	+0.5
3,774,743	+				-0.9
3,774,743	+				-0.9
3,774,911	+				+1.6
3,774,912	-				-1.0
3,774,912	-				+1.4
3,774,912	-				+1.1
3,774,952	+				-0.6
3,774,952	+				-0.4
3,774,952	+				-1.6
3,774,952	+				+1.7
3,774,953	-				+0.2
3,774,953	-				-0.0
3,774,953	-				-0.7
3,774,953	-				+1.7
3,774,953	-				+0.7
3,774,953	-				+0.0
3,774,954	+				+1.1
3,774,954	+				+0.4
3,774,954	+				+0.4
3,774,954	+				+1.4
3,774,954	+				+3.1
3,774,954	+				+0.1
3,774,954	+				-0.1
3,774,954	+				+0.4
3,774,954	+				-0.5
3,774,954	+				+1.4
3,774,954	+				-0.2
3,774,954	+				-0.2
3,774,954	+				-0.0
3,774,954	+				+0.1
3,774,954	+				+1.0
3,774,954	+				+1.2
3,774,954	+				+1.0
3,774,954	+				-0.4
3,774,954	+				-2.2
3,774,954	+				-1.2
3,774,954	+				+0.9
3,774,954	+				+2.8
3,774,955	-				+1.4
3,774,955	-				+2.0
3,774,955	-				+0.4
3,774,955	-				+0.5
3,774,955	-				-0.6
3,774,955	-				+0.8
3,774,955	-				+0.2
3,774,955	-				-0.6
3,774,955	-				+0.4
3,774,955	-				+0.4
3,774,955	-				+0.1
3,774,955	-				-0.9
3,774,955	-				+1.4
3,774,955	-				+0.0
3,774,955	-				+0.9
3,774,955	-				+0.2
3,774,955	-				+2.1
3,775,010	+				-1.7
3,775,011	-				+2.9
3,775,011	-				+0.7
3,775,020	+				-0.3
3,775,020	+				-1.9
3,775,021	-				-1.4
3,775,021	-				-0.2
3,775,021	-				+0.0
3,775,021	-				-1.2
3,775,041	+				+1.1
3,775,041	+				-0.9
3,775,041	+				-1.9
3,775,042	-				-0.3
3,775,042	-				-0.6
3,775,042	-				-0.2
3,775,042	-				-0.6
3,775,065	+		IAI47_17775	0.10	+1.0
3,775,065	+		IAI47_17775	0.10	+0.4
3,775,066	-		IAI47_17775	0.11	-0.0
3,775,066	-		IAI47_17775	0.11	-0.8
3,775,066	-		IAI47_17775	0.11	+0.4
3,775,066	-		IAI47_17775	0.11	+2.4
3,775,066	-		IAI47_17775	0.11	-0.3
3,775,092	+		IAI47_17775	0.20	+0.6
3,775,092	+		IAI47_17775	0.20	+1.7
3,775,092	+		IAI47_17775	0.20	+0.4
3,775,092	+		IAI47_17775	0.20	+0.2
3,775,092	+		IAI47_17775	0.20	-0.2
3,775,092	+		IAI47_17775	0.20	+0.5
3,775,092	+		IAI47_17775	0.20	-0.0
3,775,092	+		IAI47_17775	0.20	+0.3
3,775,092	+		IAI47_17775	0.20	+1.1
3,775,092	+		IAI47_17775	0.20	-0.2
3,775,093	-		IAI47_17775	0.20	+0.4
3,775,093	-		IAI47_17775	0.20	+0.4
3,775,093	-		IAI47_17775	0.20	-1.5
3,775,093	-		IAI47_17775	0.20	+0.1
3,775,093	-		IAI47_17775	0.20	-0.1
3,775,122	+		IAI47_17775	0.30	+0.4
3,775,122	+		IAI47_17775	0.30	+1.4
3,775,137	+		IAI47_17775	0.36	-1.6
3,775,137	+		IAI47_17775	0.36	-0.3
3,775,158	+		IAI47_17775	0.43	-1.0
3,775,158	+		IAI47_17775	0.43	-2.1
3,775,158	+		IAI47_17775	0.43	-0.4
3,775,158	+		IAI47_17775	0.43	+0.4
3,775,158	+		IAI47_17775	0.43	+0.4
3,775,158	+		IAI47_17775	0.43	-0.9
3,775,159	-		IAI47_17775	0.44	+1.2
3,775,159	-		IAI47_17775	0.44	+0.4
3,775,159	-		IAI47_17775	0.44	-0.5
3,775,159	-		IAI47_17775	0.44	-1.4
3,775,159	-		IAI47_17775	0.44	+0.8
3,775,159	-		IAI47_17775	0.44	-0.4
3,775,159	-		IAI47_17775	0.44	-0.6
3,775,159	-		IAI47_17775	0.44	+1.4
3,775,159	-		IAI47_17775	0.44	+0.6
3,775,159	-		IAI47_17775	0.44	+1.0
3,775,159	-		IAI47_17775	0.44	+1.5
3,775,159	-		IAI47_17775	0.44	-1.2
3,775,159	-		IAI47_17775	0.44	+1.9
3,775,178	+		IAI47_17775	0.50	+0.8
3,775,179	-		IAI47_17775	0.51	-0.6
3,775,219	-		IAI47_17775	0.65	+0.1
3,775,219	-		IAI47_17775	0.65	-1.6
3,775,228	-		IAI47_17775	0.68	-2.4
3,775,234	-		IAI47_17775	0.70	+0.1
3,775,242	+		IAI47_17775	0.73	-0.8
3,775,242	+		IAI47_17775	0.73	-3.4
3,775,242	+		IAI47_17775	0.73	+0.8
3,775,242	+		IAI47_17775	0.73	-1.2
3,775,242	+		IAI47_17775	0.73	+0.4
3,775,242	+		IAI47_17775	0.73	+0.0
3,775,242	+		IAI47_17775	0.73	-0.9
3,775,243	-		IAI47_17775	0.73	-0.9
3,775,243	-		IAI47_17775	0.73	+0.4
3,775,243	-		IAI47_17775	0.73	-0.4
3,775,243	-		IAI47_17775	0.73	-0.2
3,775,243	-		IAI47_17775	0.73	+0.4
3,775,243	-		IAI47_17775	0.73	+0.3
3,775,243	-		IAI47_17775	0.73	+0.6
3,775,272	+		IAI47_17775	0.84	-2.2
3,775,273	-		IAI47_17775	0.84	-1.6
3,775,273	-		IAI47_17775	0.84	-0.0
3,775,354	-				+1.0
3,775,367	+				+0.2
3,775,368	-				-1.1
3,775,369	+				-0.0
3,775,369	+				+0.9
3,775,369	+				-0.7
3,775,370	-				-0.6
3,775,370	-				+0.4
3,775,370	-				+1.0
3,775,370	-				+0.3
3,775,370	-				+0.3
3,775,385	+				+0.4
3,775,410	+				-0.6
3,775,410	+				-1.5
3,775,410	+				+0.4
3,775,410	+				-0.6
3,775,411	-				+1.4
3,775,411	-				+0.6
3,775,411	-				-0.3
3,775,413	+				-0.5
3,775,413	+				-0.0
3,775,413	+				+1.0
3,775,413	+				+0.7
3,775,413	+				-0.0
3,775,414	-				-0.2
3,775,414	-				-1.0
3,775,470	+				-0.2
3,775,470	+				+0.8
3,775,470	+				-0.5
3,775,470	+				+1.8
3,775,470	+				-2.2
3,775,471	-				+0.9
3,775,471	-				-1.0
3,775,471	-				+0.4
3,775,471	-				+0.8
3,775,471	-				-0.3
3,775,489	+		IAI47_17780	0.11	+0.0
3,775,502	-		IAI47_17780	0.12	+0.8
3,775,502	-		IAI47_17780	0.12	-0.6
3,775,502	-		IAI47_17780	0.12	+0.2
3,775,502	-		IAI47_17780	0.12	+0.6
3,775,550	+		IAI47_17780	0.17	+0.4
3,775,551	-		IAI47_17780	0.18	-1.4
3,775,551	-		IAI47_17780	0.18	+1.7
3,775,551	-		IAI47_17780	0.18	-1.3
3,775,569	+		IAI47_17780	0.19	+0.3
3,775,569	+		IAI47_17780	0.19	+0.7
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