Strain Fitness in Pantoea sp. MT58 around IAI47_14760

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_14755 and IAI47_14760 are separated by 55 nucleotidesIAI47_14760 and IAI47_14765 are separated by 19 nucleotidesIAI47_14765 and IAI47_14770 are separated by 90 nucleotides IAI47_14755: IAI47_14755 - thiamine-phosphate kinase, at 3,113,044 to 3,114,021 _14755 IAI47_14760: IAI47_14760 - transcription antitermination factor NusB, at 3,114,077 to 3,114,496 _14760 IAI47_14765: IAI47_14765 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,114,516 to 3,114,986 _14765 IAI47_14770: IAI47_14770 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,115,077 to 3,116,177 _14770 Position (kb) 3114 3115Strain fitness (log2 ratio) -1 0 1at 3114.022 kb on - strandat 3114.079 kb on - strandat 3115.036 kb on - strandat 3115.036 kb on - strandat 3115.036 kb on - strandat 3115.036 kb on - strandat 3115.041 kb on - strandat 3115.041 kb on - strandat 3115.078 kb on + strandat 3115.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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3,114,022 - -0.2
3,114,079 - +0.4
3,115,036 - -1.2
3,115,036 - -0.6
3,115,036 - -0.6
3,115,036 - +1.4
3,115,041 - +0.9
3,115,041 - -1.2
3,115,078 + -1.6
3,115,079 - +1.4

Or see this region's nucleotide sequence