Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_14755 and IAI47_14760 are separated by 55 nucleotides IAI47_14760 and IAI47_14765 are separated by 19 nucleotides IAI47_14765 and IAI47_14770 are separated by 90 nucleotides
IAI47_14755: IAI47_14755 - thiamine-phosphate kinase, at 3,113,044 to 3,114,021
_14755
IAI47_14760: IAI47_14760 - transcription antitermination factor NusB, at 3,114,077 to 3,114,496
_14760
IAI47_14765: IAI47_14765 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,114,516 to 3,114,986
_14765
IAI47_14770: IAI47_14770 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,115,077 to 3,116,177
_14770
Position (kb)
3114
3115 Strain fitness (log2 ratio)
-1
0
1 at 3114.022 kb on - strand at 3114.079 kb on - strand at 3115.036 kb on - strand at 3115.036 kb on - strand at 3115.036 kb on - strand at 3115.036 kb on - strand at 3115.041 kb on - strand at 3115.041 kb on - strand at 3115.078 kb on + strand at 3115.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 3,114,022 - -0.2 3,114,079 - +0.4 3,115,036 - -1.2 3,115,036 - -0.6 3,115,036 - -0.6 3,115,036 - +1.4 3,115,041 - +0.9 3,115,041 - -1.2 3,115,078 + -1.6 3,115,079 - +1.4
Or see this region's nucleotide sequence