Strain Fitness in Pantoea sp. MT58 around IAI47_14725

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
3,105,771	-		IAI47_14715	0.62	+1.0
3,105,771	-		IAI47_14715	0.62	+0.9
3,105,771	-		IAI47_14715	0.62	-0.6
3,105,771	-		IAI47_14715	0.62	+0.1
3,105,771	-		IAI47_14715	0.62	+0.8
3,105,771	-		IAI47_14715	0.62	-0.3
3,105,771	-		IAI47_14715	0.62	-1.5
3,105,771	-		IAI47_14715	0.62	+0.1
3,105,771	-		IAI47_14715	0.62	-0.9
3,105,771	-		IAI47_14715	0.62	-0.4
3,105,771	-		IAI47_14715	0.62	+2.4
3,105,801	-		IAI47_14715	0.65	+0.1
3,105,867	+		IAI47_14715	0.72	+2.0
3,105,867	+		IAI47_14715	0.72	-0.1
3,105,868	-		IAI47_14715	0.72	-0.7
3,105,868	-		IAI47_14715	0.72	-1.0
3,105,977	+		IAI47_14715	0.84	+0.1
3,105,977	+		IAI47_14715	0.84	-0.7
3,105,978	-		IAI47_14715	0.84	-1.3
3,105,978	-		IAI47_14715	0.84	-0.0
3,105,979	+		IAI47_14715	0.84	+2.7
3,105,979	+		IAI47_14715	0.84	+0.4
3,105,979	+		IAI47_14715	0.84	-0.3
3,105,979	+		IAI47_14715	0.84	+0.4
3,105,980	-		IAI47_14715	0.84	-0.9
3,105,980	-		IAI47_14715	0.84	+0.9
3,105,980	-		IAI47_14715	0.84	-0.9
3,105,980	-		IAI47_14715	0.84	-1.7
3,106,046	+				-0.6
3,106,046	+				-0.8
3,106,047	-				+1.0
3,106,047	-				+0.3
3,106,047	-				+1.4
3,106,047	-				-1.8
3,106,056	+				-1.9
3,106,056	+				+0.5
3,106,057	-				+0.6
3,106,057	-				+0.8
3,106,057	-				+0.5
3,106,057	-				+0.4
3,106,076	+				+0.7
3,106,077	-				-0.1
3,106,077	-				-1.9
3,106,145	+		IAI47_14720	0.11	+0.4
3,106,146	-		IAI47_14720	0.12	+0.4
3,106,146	-		IAI47_14720	0.12	-0.6
3,106,171	+		IAI47_14720	0.16	+0.2
3,106,171	+		IAI47_14720	0.16	-0.3
3,106,310	+		IAI47_14720	0.39	+0.2
3,106,311	-		IAI47_14720	0.39	+0.8
3,106,396	+		IAI47_14720	0.53	-0.4
3,106,417	+		IAI47_14720	0.57	-3.1
3,106,418	-		IAI47_14720	0.57	-0.6
3,106,418	-		IAI47_14720	0.57	+3.0
3,106,418	-		IAI47_14720	0.57	-0.1
3,106,418	-		IAI47_14720	0.57	-1.6
3,106,418	-		IAI47_14720	0.57	+1.9
3,106,418	-		IAI47_14720	0.57	+0.2
3,106,472	-		IAI47_14720	0.66	+0.7
3,106,472	-		IAI47_14720	0.66	-0.5
3,106,472	-		IAI47_14720	0.66	+0.7
3,106,493	+		IAI47_14720	0.70	+0.6
3,106,493	+		IAI47_14720	0.70	+0.2
3,106,493	+		IAI47_14720	0.70	+0.1
3,106,494	-		IAI47_14720	0.70	+0.8
3,106,494	-		IAI47_14720	0.70	+0.4
3,106,494	-		IAI47_14720	0.70	-3.0
3,106,494	-		IAI47_14720	0.70	-0.5
3,106,494	-		IAI47_14720	0.70	-0.1
3,106,494	-		IAI47_14720	0.70	+0.4
3,106,494	-		IAI47_14720	0.70	-0.8
3,106,494	-		IAI47_14720	0.70	-0.6
3,106,494	-		IAI47_14720	0.70	-0.6
3,106,494	-		IAI47_14720	0.70	+1.1
3,106,656	+				-0.6
3,106,656	+				-0.0
3,106,656	+				+0.3
3,106,656	+				+0.6
3,106,656	+				+0.4
3,106,657	-				-1.2
3,106,657	-				+1.1
3,106,657	-				+1.1
3,106,657	-				+0.4
3,106,657	-				+0.1
3,106,657	-				-0.8
3,106,671	+				+1.0
3,106,671	+				+0.4
3,106,672	-				-2.2
3,106,672	-				-0.9
3,106,672	-				+0.7
3,106,675	+				+0.6
3,106,675	+				-0.3
3,106,675	+				-0.6
3,106,675	+				+0.4
3,106,676	-				+0.3
3,106,676	-				-1.9
3,106,676	-				+2.4
3,106,676	-				+4.1
3,106,676	-				+0.4
3,106,676	-				+0.1
3,106,676	-				+0.1
3,106,676	-				+0.7
3,106,678	+				-0.2
3,106,678	+				+1.4
3,106,678	+				-1.3
3,106,678	+				-1.2
3,106,678	+				+1.1
3,106,679	-				+0.5
3,106,679	-				-0.0
3,106,679	-				-1.2
3,106,679	-				-0.8
3,106,679	-				-0.9
3,106,679	-				-0.0
3,106,686	-				+0.3
3,106,741	+				-1.8
3,106,758	-				-0.2
3,106,767	-				+1.4
3,106,786	+				-1.0
3,106,787	-				+2.4
3,106,787	-				-0.3
3,106,825	+				-0.2
3,106,826	-				-0.6
3,106,826	-				-1.6
3,106,826	-				-0.2
3,106,830	+				+0.6
3,106,830	+				-0.8
3,106,831	-				-1.5
3,106,831	-				+1.1
3,106,868	+				+0.4
3,106,869	-				+0.5
3,106,878	-				-0.2
3,106,878	-				+0.4
3,106,879	+				-0.9
3,106,880	-				-1.3
3,106,880	-				-0.3
3,106,880	-				-0.8
3,106,880	-				+0.4
3,106,943	+		IAI47_14725	0.14	+0.3
3,106,943	+		IAI47_14725	0.14	+1.1
3,106,944	-		IAI47_14725	0.14	+1.2
3,107,162	-		IAI47_14725	0.29	-0.0
3,107,274	-		IAI47_14725	0.37	-1.6
3,107,346	+		IAI47_14725	0.42	-1.6
3,107,346	+		IAI47_14725	0.42	+1.1
3,107,353	+		IAI47_14725	0.42	+1.1
3,107,403	+		IAI47_14725	0.46	-0.5
3,107,403	+		IAI47_14725	0.46	-0.6
3,107,403	+		IAI47_14725	0.46	+0.4
3,107,404	-		IAI47_14725	0.46	+0.4
3,107,404	-		IAI47_14725	0.46	+2.0
3,107,404	-		IAI47_14725	0.46	-0.8
3,107,470	-		IAI47_14725	0.50	+0.7
3,107,470	-		IAI47_14725	0.50	+1.6
3,107,470	-		IAI47_14725	0.50	-0.2
3,107,479	-		IAI47_14725	0.51	-0.2
3,107,512	+		IAI47_14725	0.53	+0.2
3,107,512	+		IAI47_14725	0.53	+0.8
3,107,512	+		IAI47_14725	0.53	+0.4
3,107,512	+		IAI47_14725	0.53	-0.3
3,107,513	-		IAI47_14725	0.53	+0.4
3,107,513	-		IAI47_14725	0.53	+0.7
3,107,513	-		IAI47_14725	0.53	+1.1
3,107,513	-		IAI47_14725	0.53	-0.8
3,107,561	+		IAI47_14725	0.57	+0.3
3,107,572	+		IAI47_14725	0.57	-0.6
3,107,572	+		IAI47_14725	0.57	+0.0
3,107,603	+		IAI47_14725	0.60	+0.7
3,107,603	+		IAI47_14725	0.60	-0.9
3,107,603	+		IAI47_14725	0.60	+0.3
3,107,603	+		IAI47_14725	0.60	+0.1
3,107,603	+		IAI47_14725	0.60	+1.4
3,107,604	-		IAI47_14725	0.60	+1.0
3,107,604	-		IAI47_14725	0.60	-0.1
3,107,604	-		IAI47_14725	0.60	+0.4
3,107,604	-		IAI47_14725	0.60	-1.2
3,107,605	+		IAI47_14725	0.60	+1.4
3,107,605	+		IAI47_14725	0.60	-0.8
3,107,605	+		IAI47_14725	0.60	+0.6
3,107,605	+		IAI47_14725	0.60	+0.4
3,107,605	+		IAI47_14725	0.60	-0.3
3,107,605	+		IAI47_14725	0.60	-0.0
3,107,605	+		IAI47_14725	0.60	-0.0
3,107,605	+		IAI47_14725	0.60	+0.8
3,107,606	-		IAI47_14725	0.60	-1.0
3,107,606	-		IAI47_14725	0.60	+0.8
3,107,606	-		IAI47_14725	0.60	-1.8
3,107,606	-		IAI47_14725	0.60	-0.2
3,107,606	-		IAI47_14725	0.60	-1.6
3,107,606	-		IAI47_14725	0.60	+0.4
3,107,692	+		IAI47_14725	0.66	-0.2
3,107,693	-		IAI47_14725	0.66	-0.1
3,107,760	-		IAI47_14725	0.70	+1.4
3,107,784	-		IAI47_14725	0.72	+0.4
3,107,805	+		IAI47_14725	0.73	-2.4
3,107,805	+		IAI47_14725	0.73	-0.2
3,107,805	+		IAI47_14725	0.73	-0.9
3,107,805	+		IAI47_14725	0.73	-0.3
3,107,805	+		IAI47_14725	0.73	-1.3
3,107,806	-		IAI47_14725	0.74	+0.0
3,107,806	-		IAI47_14725	0.74	-0.6
3,107,809	+		IAI47_14725	0.74	-0.8
3,107,809	+		IAI47_14725	0.74	+0.4
3,107,809	+		IAI47_14725	0.74	-0.6
3,107,809	+		IAI47_14725	0.74	-1.2
3,107,809	+		IAI47_14725	0.74	+0.5
3,107,810	-		IAI47_14725	0.74	-0.4
3,107,810	-		IAI47_14725	0.74	-1.2
3,107,810	-		IAI47_14725	0.74	+0.7
3,107,837	+		IAI47_14725	0.76	+0.7
3,107,837	+		IAI47_14725	0.76	-0.9
3,107,837	+		IAI47_14725	0.76	-0.2
3,107,837	+		IAI47_14725	0.76	-0.6
3,107,837	+		IAI47_14725	0.76	+1.2
3,107,837	+		IAI47_14725	0.76	+0.6
3,107,837	+		IAI47_14725	0.76	+0.4
3,107,837	+		IAI47_14725	0.76	+0.3
3,107,837	+		IAI47_14725	0.76	+1.1
3,107,837	+		IAI47_14725	0.76	-0.4
3,107,837	+		IAI47_14725	0.76	-0.3
3,107,837	+		IAI47_14725	0.76	-0.2
3,107,838	-		IAI47_14725	0.76	+0.7
3,107,838	-		IAI47_14725	0.76	+0.3
3,107,838	-		IAI47_14725	0.76	+0.1
3,107,838	-		IAI47_14725	0.76	+0.5
3,107,838	-		IAI47_14725	0.76	+1.4
3,107,838	-		IAI47_14725	0.76	+0.4
3,107,855	+		IAI47_14725	0.77	+2.7
3,107,856	-		IAI47_14725	0.77	+0.2
3,107,905	-		IAI47_14725	0.80	+1.5
3,107,931	-		IAI47_14725	0.82	+0.4
3,107,931	-		IAI47_14725	0.82	+1.6
3,107,938	+		IAI47_14725	0.83	-0.2
3,107,938	+		IAI47_14725	0.83	-0.3
3,107,939	-		IAI47_14725	0.83	+1.1
3,107,973	-		IAI47_14725	0.85	-1.6
3,108,002	+		IAI47_14725	0.87	+0.4
3,108,002	+		IAI47_14725	0.87	-0.1
3,108,002	+		IAI47_14725	0.87	-0.6
3,108,002	+		IAI47_14725	0.87	-1.8
3,108,002	+		IAI47_14725	0.87	-0.6
3,108,002	+		IAI47_14725	0.87	-0.6
3,108,003	-		IAI47_14725	0.87	-1.2
3,108,003	-		IAI47_14725	0.87	-0.8
3,108,003	-		IAI47_14725	0.87	+0.4
3,108,003	-		IAI47_14725	0.87	-0.9
3,108,003	-		IAI47_14725	0.87	+1.0
3,108,003	-		IAI47_14725	0.87	+1.1
3,108,101	+				-2.2
3,108,101	+				+0.4
3,108,102	-				-0.3
3,108,102	-				-1.2
3,108,102	-				+1.5
3,108,123	-				+0.8
3,108,168	+				-0.8
3,108,169	-				-0.4
3,108,169	-				+0.4
3,108,213	+				-0.5
3,108,213	+				+0.1
3,108,213	+				+0.4
3,108,213	+				+0.8
3,108,213	+				+0.4
3,108,214	-				-1.3
3,108,214	-				+0.8
3,108,214	-				-0.0
3,108,214	-				+0.4
3,108,214	-				+0.7
3,108,214	-				+1.0
3,108,236	+				+0.4
3,108,236	+				-0.0
3,108,237	-				+0.3
3,108,237	-				-1.6
3,108,237	-				-0.0
3,108,237	-				+0.6
3,108,237	-				+1.7
3,108,244	-				+0.6
3,108,296	+				-0.0
3,108,296	+				+0.4
3,108,296	+				-0.3
3,108,296	+				-0.6
3,108,296	+				+0.7
3,108,296	+				+0.1
3,108,296	+				+0.5
3,108,297	-				+2.4
3,108,297	-				+0.5
3,108,297	-				-1.0
3,108,297	-				+0.3
3,108,298	+				-1.2
3,108,298	+				-0.3
3,108,298	+				+1.4
3,108,298	+				-0.2
3,108,298	+				-1.1
3,108,298	+				+0.2
3,108,298	+				+0.2
3,108,298	+				+0.4
3,108,298	+				-0.8
3,108,298	+				-1.3
3,108,299	-				+0.7
3,108,299	-				-1.2
3,108,345	+				-0.4
3,108,371	+				-0.4
3,108,371	+				-0.8
3,108,371	+				+0.4
3,108,391	+				-0.4
3,108,420	+				+1.4
3,108,420	+				+1.4
3,108,621	+		IAI47_14730	0.82	-2.1
3,108,621	+		IAI47_14730	0.82	-2.4