Strain Fitness in Pantoea sp. MT58 around IAI47_13250

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,800,676	+		IAI47_13245	0.34	+4.6
2,800,676	+		IAI47_13245	0.34	-0.9
2,800,676	+		IAI47_13245	0.34	+0.8
2,800,676	+		IAI47_13245	0.34	-1.0
2,800,676	+		IAI47_13245	0.34	-1.2
2,800,677	-		IAI47_13245	0.34	+1.1
2,800,677	-		IAI47_13245	0.34	-1.0
2,800,706	+		IAI47_13245	0.38	+2.0
2,800,706	+		IAI47_13245	0.38	-0.2
2,800,706	+		IAI47_13245	0.38	+0.5
2,800,707	-		IAI47_13245	0.38	+0.7
2,800,717	-		IAI47_13245	0.39	+1.2
2,800,725	+		IAI47_13245	0.40	-0.0
2,800,727	+		IAI47_13245	0.40	+1.3
2,800,727	+		IAI47_13245	0.40	-0.2
2,800,728	-		IAI47_13245	0.40	-0.6
2,800,728	-		IAI47_13245	0.40	+0.7
2,800,728	-		IAI47_13245	0.40	+0.7
2,800,728	-		IAI47_13245	0.40	-1.3
2,800,747	-		IAI47_13245	0.42	+0.5
2,800,861	+		IAI47_13245	0.56	-0.6
2,800,861	+		IAI47_13245	0.56	+0.8
2,800,861	+		IAI47_13245	0.56	-1.0
2,800,862	-		IAI47_13245	0.56	+0.9
2,800,869	+		IAI47_13245	0.57	-0.1
2,800,869	+		IAI47_13245	0.57	-0.3
2,800,893	-		IAI47_13245	0.60	+0.7
2,800,961	+		IAI47_13245	0.68	-0.3
2,800,961	+		IAI47_13245	0.68	-0.7
2,800,962	-		IAI47_13245	0.68	+1.4
2,801,111	+		IAI47_13245	0.85	-2.2
2,801,112	-		IAI47_13245	0.85	+2.4
2,801,112	-		IAI47_13245	0.85	-2.8
2,801,112	-		IAI47_13245	0.85	-0.8
2,801,112	-		IAI47_13245	0.85	+1.0
2,801,112	-		IAI47_13245	0.85	+0.4
2,801,151	+				+1.0
2,801,152	-				+0.4
2,801,196	+				-0.5
2,801,196	+				+0.7
2,801,196	+				-1.3
2,801,196	+				+0.5
2,801,196	+				-0.6
2,801,197	-				+0.4
2,801,197	-				-0.4
2,801,197	-				-0.0
2,801,197	-				-0.6
2,801,197	-				+2.0
2,801,199	+				+0.3
2,801,199	+				-0.9
2,801,199	+				-1.6
2,801,199	+				-0.5
2,801,199	+				-0.9
2,801,200	-				-0.0
2,801,200	-				+0.1
2,801,200	-				+0.8
2,801,200	-				+0.1
2,801,200	-				-0.1
2,801,200	-				-0.6
2,801,200	-				+0.7
2,801,200	-				-1.2
2,801,200	-				-0.6
2,801,200	-				+0.1
2,801,206	+				+0.4
2,801,206	+				-0.2
2,801,207	-				-0.2
2,801,207	-				+0.3
2,801,235	+				+0.2
2,801,235	+				-0.7
2,801,235	+				-0.2
2,801,235	+				-0.3
2,801,236	-				+2.1
2,801,236	-				+0.7
2,801,251	+				-0.0
2,801,286	+				+1.0
2,801,286	+				-1.2
2,801,304	-				-0.3
2,801,376	+				-0.4
2,801,384	+				+0.2
2,801,384	+				+1.0
2,801,384	+				+1.0
2,801,385	-				-0.6
2,801,385	-				-0.3
2,801,401	+				-1.3
2,801,407	+				-1.3
2,801,407	+				-0.2
2,801,407	+				+0.1
2,801,407	+				-0.3
2,801,408	-				+0.0
2,801,408	-				-0.6
2,801,408	-				-0.0
2,801,412	-				-1.3
2,801,428	+				-0.3
2,801,429	-				+0.1
2,801,463	+				-0.2
2,801,464	-				+0.6
2,801,507	+				+0.1
2,801,545	-				+0.1
2,801,555	-				-0.1
2,801,631	+		IAI47_13250	0.11	-0.3
2,801,632	-		IAI47_13250	0.11	-0.9
2,801,652	+		IAI47_13250	0.14	-0.5
2,801,652	+		IAI47_13250	0.14	-0.1
2,801,652	+		IAI47_13250	0.14	+2.3
2,801,652	+		IAI47_13250	0.14	+0.4
2,801,652	+		IAI47_13250	0.14	-0.3
2,801,652	+		IAI47_13250	0.14	-0.6
2,801,652	+		IAI47_13250	0.14	-0.8
2,801,652	+		IAI47_13250	0.14	-0.7
2,801,652	+		IAI47_13250	0.14	-0.8
2,801,653	-		IAI47_13250	0.14	+2.0
2,801,653	-		IAI47_13250	0.14	+0.4
2,801,653	-		IAI47_13250	0.14	-0.9
2,801,653	-		IAI47_13250	0.14	+2.3
2,801,689	+		IAI47_13250	0.18	+1.1
2,801,689	+		IAI47_13250	0.18	-0.3
2,801,689	+		IAI47_13250	0.18	-1.6
2,801,689	+		IAI47_13250	0.18	+0.8
2,801,689	+		IAI47_13250	0.18	-1.8
2,801,690	-		IAI47_13250	0.19	+1.2
2,801,690	-		IAI47_13250	0.19	+0.1
2,801,690	-		IAI47_13250	0.19	+0.2
2,801,690	-		IAI47_13250	0.19	+3.3
2,801,709	+		IAI47_13250	0.21	-0.2
2,801,709	+		IAI47_13250	0.21	-2.2
2,801,709	+		IAI47_13250	0.21	-1.2
2,801,710	-		IAI47_13250	0.21	+0.7
2,801,724	+		IAI47_13250	0.23	+0.1
2,801,724	+		IAI47_13250	0.23	+0.1
2,801,724	+		IAI47_13250	0.23	-1.0
2,801,725	-		IAI47_13250	0.23	-0.7
2,801,725	-		IAI47_13250	0.23	+0.4
2,801,747	-		IAI47_13250	0.26	+0.1
2,801,761	-		IAI47_13250	0.28	+2.0
2,801,780	+		IAI47_13250	0.30	+0.6
2,801,781	-		IAI47_13250	0.30	-0.1
2,801,781	-		IAI47_13250	0.30	+0.7
2,801,781	-		IAI47_13250	0.30	-0.2
2,801,812	+		IAI47_13250	0.34	+0.4
2,801,812	+		IAI47_13250	0.34	-1.6
2,801,812	+		IAI47_13250	0.34	+0.0
2,801,813	-		IAI47_13250	0.34	-0.1
2,801,846	-		IAI47_13250	0.38	+1.4
2,801,967	+		IAI47_13250	0.54	-0.3
2,801,967	+		IAI47_13250	0.54	-1.4
2,801,967	+		IAI47_13250	0.54	+0.2
2,801,968	-		IAI47_13250	0.54	+0.4
2,801,968	-		IAI47_13250	0.54	-1.2
2,801,968	-		IAI47_13250	0.54	+2.0
2,801,968	-		IAI47_13250	0.54	-0.2
2,801,991	+		IAI47_13250	0.57	+0.4
2,802,022	+		IAI47_13250	0.60	+0.7
2,802,090	+		IAI47_13250	0.69	-0.1
2,802,090	+		IAI47_13250	0.69	+0.4
2,802,118	+		IAI47_13250	0.73	-0.1
2,802,141	+		IAI47_13250	0.76	-1.2
2,802,152	+		IAI47_13250	0.77	-0.4
2,802,153	-		IAI47_13250	0.77	+1.6
2,802,153	-		IAI47_13250	0.77	-1.0
2,802,153	-		IAI47_13250	0.77	+1.0
2,802,153	-		IAI47_13250	0.77	-0.3
2,802,153	-		IAI47_13250	0.77	+0.1
2,802,153	-		IAI47_13250	0.77	+0.3
2,802,186	+		IAI47_13250	0.81	+1.7
2,802,239	+		IAI47_13250	0.88	+0.4
2,802,240	-		IAI47_13250	0.88	+0.8
2,802,321	+				-0.6
2,802,321	+				-0.0
2,802,321	+				+0.8
2,802,322	-				+0.7
2,802,322	-				-0.3
2,802,322	-				-1.3
2,802,350	+				-2.4
2,802,351	-				+1.2
2,802,351	-				+0.4
2,802,351	-				+0.8
2,802,354	+				+0.4
2,802,354	+				+1.5
2,802,354	+				-0.7
2,802,355	-				+0.4
2,802,355	-				-0.7
2,802,355	-				+0.5
2,802,355	-				-0.9
2,802,355	-				+1.0
2,802,747	-		IAI47_13255	0.34	-0.2
2,802,747	-		IAI47_13255	0.34	-0.4
2,802,747	-		IAI47_13255	0.34	+3.6
2,802,840	+		IAI47_13255	0.42	+0.2
2,802,841	-		IAI47_13255	0.42	+0.8
2,802,841	-		IAI47_13255	0.42	-1.3
2,802,841	-		IAI47_13255	0.42	+1.2
2,802,972	+		IAI47_13255	0.53	+0.2
2,802,972	+		IAI47_13255	0.53	-0.1
2,802,984	+		IAI47_13255	0.54	+0.8
2,802,999	+		IAI47_13255	0.55	-0.2
2,803,000	-		IAI47_13255	0.55	+0.8
2,803,000	-		IAI47_13255	0.55	-0.5
2,803,128	+		IAI47_13255	0.65	+0.4
2,803,128	+		IAI47_13255	0.65	-0.9
2,803,128	+		IAI47_13255	0.65	+0.4
2,803,129	-		IAI47_13255	0.66	-0.2
2,803,129	-		IAI47_13255	0.66	+0.4
2,803,268	+		IAI47_13255	0.77	+0.6
2,803,268	+		IAI47_13255	0.77	-1.2
2,803,269	-		IAI47_13255	0.77	-1.1
2,803,269	-		IAI47_13255	0.77	+0.4
2,803,269	-		IAI47_13255	0.77	-0.3
2,803,332	+		IAI47_13255	0.82	-0.6
2,803,332	+		IAI47_13255	0.82	+0.6
2,803,332	+		IAI47_13255	0.82	-0.0
2,803,333	-		IAI47_13255	0.82	-0.9