Strain Fitness in Pantoea sp. MT58 around IAI47_13225

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,795,631	+		IAI47_13215	0.79	-0.9
2,795,631	+		IAI47_13215	0.79	-0.8
2,795,632	-		IAI47_13215	0.79	+0.1
2,795,632	-		IAI47_13215	0.79	+0.0
2,795,706	+		IAI47_13215	0.87	-0.3
2,795,706	+		IAI47_13215	0.87	-0.4
2,795,714	-		IAI47_13215	0.88	+0.1
2,795,725	+		IAI47_13215	0.89	-0.7
2,795,725	+		IAI47_13215	0.89	-0.5
2,795,726	-		IAI47_13215	0.89	+2.2
2,795,726	-		IAI47_13215	0.89	-0.2
2,795,770	-				-1.3
2,795,827	+				-0.3
2,795,841	+				-0.3
2,795,841	+				+1.4
2,795,841	+				+0.1
2,795,841	+				-1.2
2,795,842	-				-0.2
2,795,842	-				+0.8
2,795,855	+				+0.4
2,795,855	+				-0.1
2,795,860	+				+1.0
2,795,860	+				-0.7
2,795,860	+				+0.7
2,795,860	+				-0.0
2,795,860	+				+0.4
2,795,860	+				-0.0
2,795,861	-				+0.2
2,795,861	-				-0.7
2,795,861	-				+0.4
2,795,861	-				-0.8
2,795,867	+				+0.4
2,795,937	+				-1.1
2,795,943	-				-0.6
2,795,943	-				+0.1
2,795,943	-				+0.2
2,795,946	+				+1.0
2,795,946	+				+0.2
2,795,946	+				+0.7
2,795,946	+				-0.9
2,795,947	-				+0.7
2,795,947	-				-0.6
2,795,947	-				-1.3
2,795,968	+				-0.2
2,795,968	+				+0.5
2,795,968	+				-1.1
2,795,968	+				-0.4
2,795,968	+				+0.4
2,795,968	+				+1.2
2,795,968	+				+0.8
2,795,969	-				+0.7
2,795,969	-				+0.4
2,795,990	+				+0.6
2,795,990	+				+1.1
2,795,990	+				-0.0
2,795,990	+				+1.8
2,795,990	+				+0.4
2,795,991	-				-1.6
2,795,991	-				+0.4
2,795,991	-				-0.8
2,795,991	-				-0.2
2,796,067	+		IAI47_13220	0.15	+0.4
2,796,067	+		IAI47_13220	0.15	-1.9
2,796,067	+		IAI47_13220	0.15	+1.4
2,796,067	+		IAI47_13220	0.15	-0.6
2,796,067	+		IAI47_13220	0.15	-0.1
2,796,107	+		IAI47_13220	0.22	-0.2
2,796,107	+		IAI47_13220	0.22	+0.4
2,796,107	+		IAI47_13220	0.22	-2.2
2,796,108	-		IAI47_13220	0.22	-0.2
2,796,108	-		IAI47_13220	0.22	-1.9
2,796,118	+		IAI47_13220	0.24	+0.9
2,796,118	+		IAI47_13220	0.24	-0.1
2,796,119	-		IAI47_13220	0.24	-1.2
2,796,119	-		IAI47_13220	0.24	+0.4
2,796,119	-		IAI47_13220	0.24	-1.2
2,796,119	-		IAI47_13220	0.24	+1.4
2,796,131	+		IAI47_13220	0.26	-0.6
2,796,131	+		IAI47_13220	0.26	+0.0
2,796,131	+		IAI47_13220	0.26	+2.4
2,796,131	+		IAI47_13220	0.26	-0.6
2,796,132	-		IAI47_13220	0.26	+0.4
2,796,132	-		IAI47_13220	0.26	-1.2
2,796,132	-		IAI47_13220	0.26	+1.5
2,796,132	-		IAI47_13220	0.26	-0.3
2,796,132	-		IAI47_13220	0.26	+0.8
2,796,132	-		IAI47_13220	0.26	-1.1
2,796,145	+		IAI47_13220	0.28	+1.0
2,796,297	+		IAI47_13220	0.52	-1.6
2,796,489	-		IAI47_13220	0.82	-1.9
2,796,489	-		IAI47_13220	0.82	-0.8
2,796,514	-		IAI47_13220	0.86	-1.0
2,796,514	-		IAI47_13220	0.86	-0.3
2,796,539	+				-0.2
2,796,540	-				+0.8
2,796,540	-				-1.1
2,796,540	-				+0.7
2,796,542	+				+1.3
2,796,573	-				+0.4
2,796,574	-				+0.4
2,796,599	+				+4.8
2,796,599	+				+1.0
2,796,599	+				-0.5
2,796,600	-				+0.5
2,796,600	-				-0.2
2,796,600	-				-1.3
2,796,638	+				+0.6
2,796,639	-				+2.4
2,796,789	+		IAI47_13225	0.12	+0.4
2,796,790	-		IAI47_13225	0.12	+1.0
2,796,790	-		IAI47_13225	0.12	+1.8
2,796,879	-		IAI47_13225	0.18	+0.5
2,796,879	-		IAI47_13225	0.18	-0.8
2,796,879	-		IAI47_13225	0.18	-0.0
2,796,879	-		IAI47_13225	0.18	-0.6
2,796,894	+		IAI47_13225	0.19	+2.4
2,796,894	+		IAI47_13225	0.19	+0.5
2,796,894	+		IAI47_13225	0.19	+0.2
2,796,894	+		IAI47_13225	0.19	+1.2
2,796,894	+		IAI47_13225	0.19	+0.8
2,796,894	+		IAI47_13225	0.19	+0.4
2,796,894	+		IAI47_13225	0.19	-1.3
2,796,894	+		IAI47_13225	0.19	+0.4
2,796,894	+		IAI47_13225	0.19	-0.7
2,796,894	+		IAI47_13225	0.19	+0.7
2,796,894	+		IAI47_13225	0.19	-0.6
2,796,894	+		IAI47_13225	0.19	-0.6
2,796,895	-		IAI47_13225	0.19	+0.7
2,796,895	-		IAI47_13225	0.19	+0.7
2,796,895	-		IAI47_13225	0.19	+0.8
2,796,895	-		IAI47_13225	0.19	+1.2
2,796,895	-		IAI47_13225	0.19	+1.1
2,796,895	-		IAI47_13225	0.19	+0.9
2,796,895	-		IAI47_13225	0.19	-0.1
2,796,895	-		IAI47_13225	0.19	+0.0
2,796,895	-		IAI47_13225	0.19	+1.3
2,796,905	+		IAI47_13225	0.20	+0.3
2,797,034	+		IAI47_13225	0.28	-0.0
2,797,063	+		IAI47_13225	0.30	+1.8
2,797,064	-		IAI47_13225	0.30	-1.6
2,797,064	-		IAI47_13225	0.30	-0.6
2,797,367	+		IAI47_13225	0.51	+0.8
2,797,367	+		IAI47_13225	0.51	+0.9
2,797,367	+		IAI47_13225	0.51	-0.0
2,797,367	+		IAI47_13225	0.51	+0.7
2,797,367	+		IAI47_13225	0.51	+0.8
2,797,368	-		IAI47_13225	0.51	+1.2
2,797,368	-		IAI47_13225	0.51	-0.4
2,797,368	-		IAI47_13225	0.51	+0.4
2,797,574	+		IAI47_13225	0.64	+0.9
2,797,669	+		IAI47_13225	0.71	-1.4
2,797,669	+		IAI47_13225	0.71	+1.0
2,797,669	+		IAI47_13225	0.71	+1.1
2,797,680	+		IAI47_13225	0.71	+0.4
2,797,785	+		IAI47_13225	0.78	+0.3
2,797,785	+		IAI47_13225	0.78	+0.4
2,797,785	+		IAI47_13225	0.78	-0.5
2,797,785	+		IAI47_13225	0.78	+1.7
2,797,785	+		IAI47_13225	0.78	+1.6
2,797,785	+		IAI47_13225	0.78	-0.0
2,797,785	+		IAI47_13225	0.78	+1.8
2,797,785	+		IAI47_13225	0.78	-0.6
2,797,785	+		IAI47_13225	0.78	+0.2
2,797,785	+		IAI47_13225	0.78	-0.2
2,797,785	+		IAI47_13225	0.78	+1.1
2,797,785	+		IAI47_13225	0.78	+0.8
2,797,785	+		IAI47_13225	0.78	+0.2
2,797,785	+		IAI47_13225	0.78	-0.6
2,797,786	-		IAI47_13225	0.78	+0.0
2,797,786	-		IAI47_13225	0.78	+2.0
2,797,786	-		IAI47_13225	0.78	-0.5
2,797,786	-		IAI47_13225	0.78	+0.3
2,797,832	-		IAI47_13225	0.81	-1.3
2,797,866	-		IAI47_13225	0.84	+0.4
2,797,866	-		IAI47_13225	0.84	+2.1
2,797,870	+		IAI47_13225	0.84	+2.2
2,797,870	+		IAI47_13225	0.84	-0.0
2,797,870	+		IAI47_13225	0.84	-0.2
2,797,871	-		IAI47_13225	0.84	+0.8
2,797,871	-		IAI47_13225	0.84	-0.3
2,797,871	-		IAI47_13225	0.84	-0.6
2,797,910	-		IAI47_13225	0.87	+0.8
2,797,910	-		IAI47_13225	0.87	-0.4
2,797,910	-		IAI47_13225	0.87	+0.4
2,797,910	-		IAI47_13225	0.87	+1.0
2,797,928	+		IAI47_13225	0.88	-0.0
2,797,937	-		IAI47_13225	0.88	-0.1
2,797,939	+		IAI47_13225	0.89	-0.2
2,797,939	+		IAI47_13225	0.89	-0.6
2,797,939	+		IAI47_13225	0.89	-0.0
2,797,939	+		IAI47_13225	0.89	-0.6
2,797,939	+		IAI47_13225	0.89	+0.4
2,797,939	+		IAI47_13225	0.89	+1.4
2,797,940	-		IAI47_13225	0.89	-0.3
2,797,947	+		IAI47_13225	0.89	-0.5
2,797,948	-		IAI47_13225	0.89	-0.6
2,797,948	-		IAI47_13225	0.89	+0.0
2,797,948	-		IAI47_13225	0.89	-0.6
2,797,953	-		IAI47_13225	0.90	-0.6
2,797,953	-		IAI47_13225	0.90	-0.0
2,798,074	+				+0.2
2,798,074	+				-0.5
2,798,075	-				+0.6
2,798,075	-				+1.6
2,798,075	-				-0.7
2,798,122	+				-0.1
2,798,122	+				+1.4
2,798,123	-				+0.7
2,798,123	-				-0.9
2,798,123	-				-1.2
2,798,123	-				-0.4
2,798,154	+				-0.1
2,798,155	-				-1.8
2,798,155	-				+1.0
2,798,155	-				-0.0
2,798,155	-				+1.4
2,798,155	-				-1.8
2,798,164	-				-2.2
2,798,235	+		IAI47_13230	0.15	+0.1
2,798,235	+		IAI47_13230	0.15	-0.0
2,798,235	+		IAI47_13230	0.15	+0.6
2,798,236	-		IAI47_13230	0.15	+0.4
2,798,236	-		IAI47_13230	0.15	-0.6
2,798,236	-		IAI47_13230	0.15	+0.4
2,798,236	-		IAI47_13230	0.15	+0.3
2,798,462	+		IAI47_13230	0.43	+0.8
2,798,532	+		IAI47_13230	0.52	+1.0
2,798,549	+		IAI47_13230	0.54	+1.6
2,798,549	+		IAI47_13230	0.54	-0.6
2,798,549	+		IAI47_13230	0.54	+0.3
2,798,549	+		IAI47_13230	0.54	+0.2
2,798,549	+		IAI47_13230	0.54	-0.2
2,798,549	+		IAI47_13230	0.54	-0.1
2,798,549	+		IAI47_13230	0.54	+0.4
2,798,549	+		IAI47_13230	0.54	-0.0
2,798,550	-		IAI47_13230	0.54	+1.0
2,798,550	-		IAI47_13230	0.54	+0.6
2,798,566	-		IAI47_13230	0.56	+1.1
2,798,578	+		IAI47_13230	0.58	-0.9
2,798,579	-		IAI47_13230	0.58	-0.1
2,798,579	-		IAI47_13230	0.58	-0.1
2,798,754	+		IAI47_13230	0.80	+0.9
2,798,754	+		IAI47_13230	0.80	-0.9
2,798,755	-		IAI47_13230	0.80	-0.3
2,798,755	-		IAI47_13230	0.80	+0.5
2,798,755	-		IAI47_13230	0.80	+0.2
2,798,769	+		IAI47_13230	0.82	-0.9
2,798,770	-		IAI47_13230	0.82	-0.6
2,798,770	-		IAI47_13230	0.82	+0.4
2,798,799	+		IAI47_13230	0.86	+0.4
2,798,799	+		IAI47_13230	0.86	-0.6
2,798,799	+		IAI47_13230	0.86	+1.2
2,798,799	+		IAI47_13230	0.86	+0.7
2,798,800	-		IAI47_13230	0.86	+0.1
2,798,800	-		IAI47_13230	0.86	+0.1
2,798,800	-		IAI47_13230	0.86	+1.3
2,798,868	+				-0.5
2,798,868	+				+0.6
2,798,868	+				-0.2
2,798,868	+				-1.1
2,798,868	+				-0.0
2,798,868	+				+1.0
2,798,868	+				+1.0
2,798,868	+				+0.6
2,798,869	-				+2.4
2,798,869	-				+0.4
2,798,869	-				+0.1
2,798,869	-				+1.0
2,798,869	-				+1.6
2,798,873	-				+0.1
2,798,938	+				-0.8
2,798,968	+				+0.4
2,798,969	-				+1.0
2,799,003	+		IAI47_13235	0.13	-0.2
2,799,003	+		IAI47_13235	0.13	-1.1
2,799,003	+		IAI47_13235	0.13	-0.5
2,799,003	+		IAI47_13235	0.13	+1.1
2,799,003	+		IAI47_13235	0.13	+0.2
2,799,004	-		IAI47_13235	0.13	-0.6
2,799,004	-		IAI47_13235	0.13	-0.3
2,799,004	-		IAI47_13235	0.13	+2.2
2,799,004	-		IAI47_13235	0.13	+2.5
2,799,004	-		IAI47_13235	0.13	-0.1
2,799,004	-		IAI47_13235	0.13	+0.3
2,799,004	-		IAI47_13235	0.13	+0.6
2,799,036	+		IAI47_13235	0.18	-0.7
2,799,036	+		IAI47_13235	0.18	+0.6
2,799,036	+		IAI47_13235	0.18	-1.9
2,799,036	+		IAI47_13235	0.18	+0.1
2,799,037	-		IAI47_13235	0.18	-0.0
2,799,037	-		IAI47_13235	0.18	-1.4
2,799,037	-		IAI47_13235	0.18	+0.0
2,799,037	-		IAI47_13235	0.18	-0.2
2,799,037	-		IAI47_13235	0.18	+0.4
2,799,037	-		IAI47_13235	0.18	-0.2
2,799,037	-		IAI47_13235	0.18	+1.2
2,799,037	-		IAI47_13235	0.18	+0.0
2,799,075	+		IAI47_13235	0.23	-0.9
2,799,075	+		IAI47_13235	0.23	-0.2
2,799,075	+		IAI47_13235	0.23	-0.7
2,799,075	+		IAI47_13235	0.23	+1.0
2,799,076	-		IAI47_13235	0.23	-0.2
2,799,079	+		IAI47_13235	0.23	-0.9
2,799,079	+		IAI47_13235	0.23	-1.5
2,799,079	+		IAI47_13235	0.23	+0.4
2,799,079	+		IAI47_13235	0.23	-1.6
2,799,080	-		IAI47_13235	0.23	-0.1
2,799,080	-		IAI47_13235	0.23	-0.6