Strain Fitness in Pantoea sp. MT58 around IAI47_12925

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,732,506	+		IAI47_12920	0.24	-1.9
2,732,507	-		IAI47_12920	0.24	-2.2
2,732,507	-		IAI47_12920	0.24	-1.2
2,732,602	+		IAI47_12920	0.34	-1.0
2,732,602	+		IAI47_12920	0.34	+0.3
2,732,603	-		IAI47_12920	0.34	-0.7
2,732,631	-		IAI47_12920	0.37	-2.8
2,732,705	+		IAI47_12920	0.44	-0.9
2,732,706	-		IAI47_12920	0.44	-1.2
2,732,765	+		IAI47_12920	0.50	-2.5
2,732,766	-		IAI47_12920	0.51	-2.8
2,732,766	-		IAI47_12920	0.51	-1.5
2,732,950	+		IAI47_12920	0.70	-1.7
2,733,062	+		IAI47_12920	0.81	-2.7
2,733,062	+		IAI47_12920	0.81	-0.7
2,733,062	+		IAI47_12920	0.81	-1.0
2,733,148	+				-2.7
2,733,148	+				+0.3
2,733,148	+				+0.3
2,733,148	+				-2.7
2,733,148	+				-1.7
2,733,149	-				-1.7
2,733,149	-				-0.7
2,733,149	-				-2.0
2,733,149	-				-1.8
2,733,149	-				-1.5
2,733,149	-				-2.5
2,733,149	-				-3.4
2,733,149	-				-0.7
2,733,149	-				-1.7
2,733,149	-				-2.1
2,733,152	+				-1.2
2,733,152	+				-2.8
2,733,152	+				-1.7
2,733,153	-				-2.2
2,733,166	+				+0.9
2,733,166	+				-0.2
2,733,166	+				-2.8
2,733,230	-				+2.7
2,733,230	-				+0.0
2,733,242	+				-0.1
2,733,243	-				+0.1
2,733,243	-				+0.8
2,733,243	-				-0.1
2,733,243	-				+1.0
2,733,301	+				-0.1
2,733,315	+				-1.7
2,733,315	+				-0.8
2,733,315	+				+0.9
2,733,374	+				+0.3
2,733,374	+				-0.1
2,733,374	+				-0.4
2,733,374	+				+0.1
2,733,374	+				-0.2
2,733,374	+				+0.9
2,733,374	+				+0.3
2,733,374	+				+0.7
2,733,375	-				-0.7
2,733,375	-				+1.6
2,733,375	-				+1.3
2,733,624	+		IAI47_12925	0.13	+0.3
2,733,793	+		IAI47_12925	0.23	+0.3
2,733,794	-		IAI47_12925	0.23	-0.2
2,733,797	-		IAI47_12925	0.23	+0.3
2,733,797	-		IAI47_12925	0.23	-1.1
2,734,187	-		IAI47_12925	0.45	+1.5
2,734,201	+		IAI47_12925	0.46	-1.2
2,734,368	+		IAI47_12925	0.55	+2.8
2,734,368	+		IAI47_12925	0.55	+0.3
2,734,369	-		IAI47_12925	0.55	+0.6
2,734,554	+		IAI47_12925	0.66	+1.7
2,734,555	-		IAI47_12925	0.66	+1.9
2,734,636	-		IAI47_12925	0.71	+1.1
2,734,638	-		IAI47_12925	0.71	+0.3
2,734,691	+		IAI47_12925	0.74	+1.7
2,735,007	+				+2.2
2,735,007	+				+1.7
2,735,008	-				-1.0
2,735,008	-				-1.1
2,735,238	-				+4.8
2,735,319	+				+1.8
2,735,321	+				-1.7
2,735,322	-				+2.3
2,735,331	+		IAI47_12930	0.10	+1.1
2,735,389	-		IAI47_12930	0.13	-1.2
2,735,556	+		IAI47_12930	0.23	+0.3
2,735,557	-		IAI47_12930	0.23	+2.3
2,735,673	-		IAI47_12930	0.30	+0.0
2,735,700	+		IAI47_12930	0.31	+0.9
2,735,884	+		IAI47_12930	0.42	+2.1
2,736,065	+		IAI47_12930	0.52	+0.3