Strain Fitness in Pantoea sp. MT58 around IAI47_12635

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,656,531	+		IAI47_12630	0.54	+1.9
2,656,598	-		IAI47_12630	0.57	+1.2
2,656,615	+		IAI47_12630	0.58	-0.2
2,656,615	+		IAI47_12630	0.58	-0.6
2,656,615	+		IAI47_12630	0.58	-0.5
2,656,615	+				-1.2
2,656,615	+		IAI47_12630	0.58	-0.6
2,656,616	-		IAI47_12630	0.58	+0.6
2,656,616	-		IAI47_12630	0.58	+1.9
2,656,682	+		IAI47_12630	0.61	+1.0
2,656,682	+		IAI47_12630	0.61	-0.4
2,656,683	-		IAI47_12630	0.61	+0.9
2,656,710	+		IAI47_12630	0.62	-1.4
2,656,710	+		IAI47_12630	0.62	+3.5
2,656,710	+		IAI47_12630	0.62	-0.9
2,656,710	+		IAI47_12630	0.62	-0.4
2,656,710	+		IAI47_12630	0.62	-0.4
2,656,711	-		IAI47_12630	0.62	-1.2
2,656,711	-		IAI47_12630	0.62	+0.1
2,656,711	-		IAI47_12630	0.62	-0.0
2,656,711	-		IAI47_12630	0.62	+2.3
2,656,711	-		IAI47_12630	0.62	-1.1
2,656,711	-		IAI47_12630	0.62	+1.9
2,656,711	-		IAI47_12630	0.62	+0.3
2,656,715	-		IAI47_12630	0.63	+0.0
2,656,741	+		IAI47_12630	0.64	-0.3
2,656,741	+		IAI47_12630	0.64	+0.8
2,656,741	+		IAI47_12630	0.64	+0.3
2,656,741	+		IAI47_12630	0.64	+1.2
2,656,742	-		IAI47_12630	0.64	+1.6
2,656,742	-		IAI47_12630	0.64	+1.0
2,656,742	-		IAI47_12630	0.64	-0.5
2,656,759	-		IAI47_12630	0.65	-0.1
2,656,759	-		IAI47_12630	0.65	-0.1
2,656,759	-		IAI47_12630	0.65	+0.9
2,656,788	+		IAI47_12630	0.66	-0.5
2,656,788	+		IAI47_12630	0.66	+0.0
2,656,789	-		IAI47_12630	0.66	-0.1
2,656,789	-		IAI47_12630	0.66	+1.1
2,656,836	+		IAI47_12630	0.68	+0.3
2,656,836	+		IAI47_12630	0.68	-0.5
2,656,836	+		IAI47_12630	0.68	-2.2
2,656,837	-		IAI47_12630	0.68	+2.3
2,656,837	-		IAI47_12630	0.68	+0.7
2,656,837	-		IAI47_12630	0.68	+1.8
2,656,837	-		IAI47_12630	0.68	-0.1
2,656,837	-		IAI47_12630	0.68	-0.5
2,656,841	+		IAI47_12630	0.68	+1.2
2,656,841	+		IAI47_12630	0.68	-0.2
2,656,841	+		IAI47_12630	0.68	+0.0
2,656,842	-		IAI47_12630	0.69	-0.3
2,656,842	-		IAI47_12630	0.69	-0.7
2,656,842	-		IAI47_12630	0.69	+1.7
2,656,861	+		IAI47_12630	0.69	+0.0
2,656,861	+		IAI47_12630	0.69	-0.0
2,656,888	+		IAI47_12630	0.71	-0.2
2,656,889	-		IAI47_12630	0.71	+0.7
2,656,897	-		IAI47_12630	0.71	-1.1
2,656,929	+		IAI47_12630	0.73	+0.3
2,656,929	+		IAI47_12630	0.73	-0.7
2,656,930	-		IAI47_12630	0.73	+0.9
2,656,941	+		IAI47_12630	0.73	-0.3
2,656,941	+		IAI47_12630	0.73	+1.2
2,656,941	+		IAI47_12630	0.73	-0.7
2,656,941	+		IAI47_12630	0.73	+3.7
2,656,942	-		IAI47_12630	0.73	+0.9
2,656,978	+		IAI47_12630	0.75	-1.0
2,656,978	+		IAI47_12630	0.75	+0.6
2,656,979	-		IAI47_12630	0.75	-0.1
2,656,979	-		IAI47_12630	0.75	+0.0
2,657,048	+		IAI47_12630	0.78	+0.9
2,657,049	-		IAI47_12630	0.78	-0.2
2,657,049	-		IAI47_12630	0.78	+0.2
2,657,072	+		IAI47_12630	0.79	-1.1
2,657,072	+		IAI47_12630	0.79	-0.4
2,657,072	+		IAI47_12630	0.79	+0.3
2,657,072	+		IAI47_12630	0.79	+0.2
2,657,072	+		IAI47_12630	0.79	+1.3
2,657,072	+		IAI47_12630	0.79	+0.9
2,657,072	+		IAI47_12630	0.79	+1.3
2,657,072	+		IAI47_12630	0.79	-0.9
2,657,073	-		IAI47_12630	0.79	+0.3
2,657,073	-		IAI47_12630	0.79	-0.7
2,657,073	-		IAI47_12630	0.79	-0.7
2,657,247	-		IAI47_12630	0.87	-0.5
2,657,247	-		IAI47_12630	0.87	-0.1
2,657,282	-		IAI47_12630	0.89	+0.5
2,657,314	+				-0.1
2,657,314	+				-1.5
2,657,315	-				+0.9
2,657,324	+				+0.5
2,657,324	+				-1.5
2,657,324	+				-0.1
2,657,324	+				-0.3
2,657,324	+				+0.3
2,657,325	-				-0.7
2,657,352	+				-0.2
2,657,352	+				-1.6
2,657,353	-				+1.3
2,657,353	-				-0.4
2,657,353	-				+0.0
2,657,353	-				+0.3
2,657,475	+				+2.1
2,657,475	+				-0.3
2,657,476	-				-0.5
2,657,476	-				+1.9
2,657,476	-				+0.0
2,657,509	+				-0.8
2,657,509	+				-0.7
2,657,509	+				-0.5
2,657,510	-				-0.2
2,657,510	-				+1.2
2,657,510	-				+0.9
2,657,510	-				-0.9
2,657,510	-				+0.0
2,657,552	-				+3.8
2,657,626	-		IAI47_12635	0.17	+0.2
2,657,647	+		IAI47_12635	0.20	+0.7
2,657,647	+		IAI47_12635	0.20	+1.6
2,657,647	+		IAI47_12635	0.20	+0.1
2,657,647	+		IAI47_12635	0.20	-0.4
2,657,647	+		IAI47_12635	0.20	-0.5
2,657,647	+		IAI47_12635	0.20	+1.9
2,657,647	+		IAI47_12635	0.20	+1.5
2,657,648	-		IAI47_12635	0.21	-0.4
2,657,648	-		IAI47_12635	0.21	-1.7
2,657,648	-		IAI47_12635	0.21	+0.3
2,657,648	-		IAI47_12635	0.21	-0.1
2,657,648	-		IAI47_12635	0.21	-0.4
2,657,684	-		IAI47_12635	0.26	+0.3
2,657,717	+		IAI47_12635	0.32	+0.3
2,657,718	-		IAI47_12635	0.32	-0.2
2,657,750	+		IAI47_12635	0.37	+0.8
2,657,750	+		IAI47_12635	0.37	-1.0
2,657,751	-		IAI47_12635	0.37	+1.2
2,657,751	-		IAI47_12635	0.37	+1.6
2,657,770	+		IAI47_12635	0.40	-0.0
2,657,770	+		IAI47_12635	0.40	+0.3
2,657,770	+		IAI47_12635	0.40	+2.9
2,657,770	+		IAI47_12635	0.40	+0.8
2,657,770	+		IAI47_12635	0.40	+0.3
2,657,770	+		IAI47_12635	0.40	+0.7
2,657,770	+		IAI47_12635	0.40	+0.5
2,657,771	-		IAI47_12635	0.40	+0.8
2,657,771	-		IAI47_12635	0.40	+1.2
2,657,771	-		IAI47_12635	0.40	+0.3
2,657,771	-		IAI47_12635	0.40	-0.6
2,657,771	-		IAI47_12635	0.40	-0.4
2,657,771	-		IAI47_12635	0.40	+0.9
2,657,781	+		IAI47_12635	0.42	-0.1
2,657,781	+		IAI47_12635	0.42	+0.9
2,657,843	-		IAI47_12635	0.52	-0.3
2,657,843	-		IAI47_12635	0.52	+3.8
2,657,888	-		IAI47_12635	0.59	+0.2
2,657,909	+		IAI47_12635	0.62	+0.5
2,657,909	+		IAI47_12635	0.62	-0.5
2,657,910	-		IAI47_12635	0.62	-1.0
2,657,975	+		IAI47_12635	0.73	-0.5
2,657,975	+		IAI47_12635	0.73	-0.3
2,657,975	+		IAI47_12635	0.73	-1.0
2,657,976	-		IAI47_12635	0.73	+0.2
2,657,976	-		IAI47_12635	0.73	+0.8
2,658,005	+		IAI47_12635	0.77	+0.8
2,658,019	-		IAI47_12635	0.80	+1.0
2,658,019	-		IAI47_12635	0.80	-0.0
2,658,019	-		IAI47_12635	0.80	-0.2
2,658,021	+		IAI47_12635	0.80	-0.8
2,658,021	+		IAI47_12635	0.80	+1.1
2,658,021	+		IAI47_12635	0.80	+0.9
2,658,022	-		IAI47_12635	0.80	+0.3
2,658,022	-		IAI47_12635	0.80	+0.8
2,658,022	-		IAI47_12635	0.80	+0.0
2,658,026	-		IAI47_12635	0.81	+1.9
2,658,026	-		IAI47_12635	0.81	+0.8
2,658,059	+		IAI47_12635	0.86	+0.5
2,658,059	+		IAI47_12635	0.86	+0.6
2,658,060	-		IAI47_12635	0.86	-0.5
2,658,136	-				-0.2
2,658,164	-				-0.8
2,658,183	-				+0.9
2,658,242	+				+1.2
2,658,242	+				+0.5
2,658,242	+				-0.7
2,658,242	+				-0.4
2,658,243	-				+1.6
2,658,243	-				+0.6
2,658,254	+				-0.5
2,658,254	+				-0.2
2,658,254	+				+0.2
2,658,254	+				+1.0
2,658,254	+				+2.2
2,658,254	+				+0.2
2,658,255	-				+0.1
2,658,255	-				-1.0
2,658,255	-				-0.7
2,658,255	-				+0.2
2,658,255	-				+0.7
2,658,255	-				+1.3
2,658,255	-				+0.1
2,658,304	+				-1.7
2,658,325	-				-0.5
2,658,352	+				-0.1
2,658,352	+				-1.5
2,658,353	-				-1.2
2,658,353	-				-0.7
2,658,353	-				+0.3
2,658,353	-				-0.8
2,658,357	+				+0.8
2,658,357	+				-0.9
2,658,358	-				-0.7
2,658,358	-				-0.3
2,658,358	-				+0.5
2,658,375	+				-0.0
2,658,375	+				+1.3
2,658,375	+				-0.5
2,658,375	+				+1.2
2,658,375	+				-0.4
2,658,376	-				+0.5
2,658,376	-				+0.3
2,658,376	-				+0.2
2,658,378	+				-0.5
2,658,379	-				-0.4
2,658,379	-				-0.7
2,658,388	+				+1.0
2,658,389	-				+0.2
2,658,389	-				-0.7
2,658,389	-				-2.0
2,658,389	-				+0.3
2,658,389	-				-0.7
2,658,389	-				+0.6
2,658,400	+				-0.4
2,658,400	+				+1.2
2,658,401	-				+0.8
2,658,401	-				-1.0
2,658,401	-				-0.1
2,658,401	-				+0.5
2,658,401	-				-0.7
2,658,449	+		IAI47_12640	0.18	-0.4
2,658,449	+		IAI47_12640	0.18	+0.9
2,658,449	+		IAI47_12640	0.18	-0.4
2,658,450	-		IAI47_12640	0.19	-0.5
2,658,450	-		IAI47_12640	0.19	+1.6
2,658,450	-		IAI47_12640	0.19	-0.2
2,658,450	-		IAI47_12640	0.19	-1.2
2,658,450	-		IAI47_12640	0.19	+0.8
2,658,450	-		IAI47_12640	0.19	-0.6
2,658,455	-		IAI47_12640	0.20	-0.4
2,658,455	-		IAI47_12640	0.20	-0.3
2,658,497	+		IAI47_12640	0.28	-2.1
2,658,498	-		IAI47_12640	0.28	-0.1
2,658,498	-		IAI47_12640	0.28	+0.6
2,658,498	-		IAI47_12640	0.28	-0.7
2,658,500	+		IAI47_12640	0.29	+2.7
2,658,500	+		IAI47_12640	0.29	-0.3
2,658,501	-		IAI47_12640	0.29	+0.2
2,658,501	-		IAI47_12640	0.29	-0.2
2,658,501	-		IAI47_12640	0.29	+0.6
2,658,501	-		IAI47_12640	0.29	-0.1
2,658,552	+		IAI47_12640	0.39	-1.7
2,658,552	+		IAI47_12640	0.39	-0.5
2,658,552	+		IAI47_12640	0.39	-2.2
2,658,552	+		IAI47_12640	0.39	+0.0
2,658,553	-		IAI47_12640	0.40	-2.0
2,658,553	-		IAI47_12640	0.40	-0.2
2,658,553	-		IAI47_12640	0.40	-1.1
2,658,553	-		IAI47_12640	0.40	-0.7
2,658,587	+		IAI47_12640	0.47	+1.1
2,658,587	+		IAI47_12640	0.47	-0.1
2,658,588	-		IAI47_12640	0.47	+1.3
2,658,588	-		IAI47_12640	0.47	-0.9
2,658,588	-		IAI47_12640	0.47	-0.7
2,658,588	-		IAI47_12640	0.47	-0.0
2,658,593	+		IAI47_12640	0.48	-0.5
2,658,593	+		IAI47_12640	0.48	-0.2
2,658,594	-		IAI47_12640	0.48	+0.3
2,658,594	-		IAI47_12640	0.48	-0.3
2,658,594	-		IAI47_12640	0.48	+0.3
2,658,597	+		IAI47_12640	0.49	+0.2
2,658,597	+		IAI47_12640	0.49	+0.3
2,658,598	-		IAI47_12640	0.49	+2.3
2,658,598	-		IAI47_12640	0.49	+1.3
2,658,598	-		IAI47_12640	0.49	+1.0
2,658,603	+		IAI47_12640	0.50	-1.4
2,658,603	+		IAI47_12640	0.50	-0.0
2,658,603	+		IAI47_12640	0.50	+0.1
2,658,603	+		IAI47_12640	0.50	+0.6
2,658,603	+		IAI47_12640	0.50	-0.7
2,658,603	+		IAI47_12640	0.50	-0.4
2,658,604	-		IAI47_12640	0.50	+1.0
2,658,609	+		IAI47_12640	0.51	-0.2
2,658,609	+		IAI47_12640	0.51	-0.8
2,658,609	+		IAI47_12640	0.51	+0.3
2,658,610	-		IAI47_12640	0.51	-0.1
2,658,610	-		IAI47_12640	0.51	+0.3
2,658,610	-		IAI47_12640	0.51	-0.1
2,658,652	-		IAI47_12640	0.60	-0.2
2,658,652	-		IAI47_12640	0.60	-1.7
2,658,673	+		IAI47_12640	0.64	+0.9
2,658,674	-		IAI47_12640	0.64	-1.0
2,658,674	-		IAI47_12640	0.64	+0.3
2,658,674	-		IAI47_12640	0.64	+0.7
2,658,821	+				+1.3
2,658,847	+				-1.1
2,658,848	-				-2.0
2,658,874	+				-0.7
2,658,875	-				-0.4
2,658,877	+				-1.1
2,658,877	+				+0.7
2,658,877	+				-0.2
2,658,878	-				-1.7
2,658,878	-				-0.2
2,658,878	-				+0.5
2,658,878	-				-0.9
2,658,878	-				-0.8
2,658,883	+				+0.3
2,658,883	+				-0.7
2,658,896	+				-0.5
2,658,913	+				+0.0
2,658,914	-				+0.7
2,658,968	+				-3.1
2,658,979	+				-0.8
2,658,979	+				-1.0
2,658,980	-				-1.2
2,658,980	-				-2.2
2,658,999	+				+0.1
2,658,999	+				-2.2
2,659,020	+				-1.0
2,659,035	+				+0.3
2,659,035	+				-2.0
2,659,035	+				-1.7
2,659,035	+				-3.8
2,659,035	+				-2.5
2,659,035	+				-2.1
2,659,036	-				-2.0
2,659,036	-				-2.7
2,659,036	-				-3.7
2,659,036	-				-2.8
2,659,036	-				-3.0
2,659,036	-				-2.0
2,659,041	+				-0.7
2,659,041	+				-2.1
2,659,041	+				-2.0
2,659,041	+				-2.2
2,659,067	+				-2.0
2,659,067	+				-0.7
2,659,067	+				-3.2
2,659,067	+				-1.4
2,659,067	+				-1.2
2,659,067	+				-3.6
2,659,087	+				-2.0
2,659,114	+				-0.7
2,659,114	+				-2.7
2,659,114	+				-2.8