Strain Fitness in Pantoea sp. MT58 around IAI47_12520

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,637,649	+		IAI47_12510	0.79	-1.5
2,637,649	+		IAI47_12510	0.79	+0.5
2,637,649	+		IAI47_12510	0.79	+0.6
2,637,649	+		IAI47_12510	0.79	-2.1
2,637,649	+		IAI47_12510	0.79	+0.3
2,637,649	+		IAI47_12510	0.79	-0.1
2,637,650	-		IAI47_12510	0.79	-0.2
2,637,683	+		IAI47_12510	0.82	+0.5
2,637,683	+		IAI47_12510	0.82	-1.2
2,637,683	+		IAI47_12510	0.82	-0.1
2,637,684	-		IAI47_12510	0.82	+0.5
2,637,721	+		IAI47_12510	0.85	-1.2
2,637,751	+		IAI47_12510	0.88	+1.3
2,637,751	+		IAI47_12510	0.88	-0.0
2,637,752	-		IAI47_12510	0.88	-0.4
2,637,752	-		IAI47_12510	0.88	-0.1
2,637,752	-		IAI47_12510	0.88	+0.5
2,637,752	-		IAI47_12510	0.88	+2.3
2,637,800	+				+1.3
2,637,800	+				-0.2
2,637,845	+				-0.7
2,637,846	-				-1.0
2,637,846	-				+0.3
2,637,893	+				-0.4
2,637,904	+				+0.3
2,637,991	+		IAI47_12515	0.15	-1.0
2,637,992	-		IAI47_12515	0.16	+1.6
2,638,004	+		IAI47_12515	0.17	-0.8
2,638,005	-		IAI47_12515	0.17	-0.5
2,638,022	+		IAI47_12515	0.20	-0.5
2,638,023	-		IAI47_12515	0.20	+0.6
2,638,151	+		IAI47_12515	0.38	+0.3
2,638,151	+		IAI47_12515	0.38	-0.1
2,638,151	+		IAI47_12515	0.38	+0.3
2,638,151	+		IAI47_12515	0.38	-0.0
2,638,151	+		IAI47_12515	0.38	+0.0
2,638,152	-		IAI47_12515	0.38	+0.4
2,638,152	-		IAI47_12515	0.38	+0.3
2,638,152	-		IAI47_12515	0.38	-0.4
2,638,152	-		IAI47_12515	0.38	+0.9
2,638,180	+		IAI47_12515	0.42	-1.0
2,638,204	-		IAI47_12515	0.45	-0.7
2,638,337	+		IAI47_12515	0.64	+0.3
2,638,337	+		IAI47_12515	0.64	+0.3
2,638,337	+		IAI47_12515	0.64	+1.6
2,638,338	-		IAI47_12515	0.64	-0.1
2,638,338	-		IAI47_12515	0.64	-0.2
2,638,338	-		IAI47_12515	0.64	-1.0
2,638,338	-		IAI47_12515	0.64	-0.2
2,638,338	-		IAI47_12515	0.64	+3.5
2,638,340	-		IAI47_12515	0.64	+0.7
2,638,431	+		IAI47_12515	0.77	-0.7
2,638,454	+		IAI47_12515	0.80	+0.5
2,638,454	+		IAI47_12515	0.80	+0.8
2,638,454	+		IAI47_12515	0.80	-0.2
2,638,455	-		IAI47_12515	0.80	+0.3
2,638,484	+		IAI47_12515	0.84	-0.5
2,638,484	+		IAI47_12515	0.84	+2.0
2,638,484	+		IAI47_12515	0.84	+0.3
2,638,484	+		IAI47_12515	0.84	-1.1
2,638,484	+		IAI47_12515	0.84	+1.3
2,638,484	+		IAI47_12515	0.84	+0.6
2,638,485	-		IAI47_12515	0.85	-0.5
2,638,564	+				+0.8
2,638,565	-				+0.3
2,638,601	-				-0.4
2,638,601	-				-0.1
2,638,614	+				+0.3
2,638,614	+				-0.2
2,638,614	+				-0.9
2,638,615	-				-0.5
2,638,615	-				-0.3
2,638,615	-				-0.4
2,638,626	+				-0.7
2,638,626	+				+0.0
2,638,626	+				+2.1
2,638,627	-				-1.7
2,638,627	-				+0.2
2,638,627	-				-0.0
2,638,627	-				+0.0
2,638,657	-		IAI47_12520	0.11	-0.3
2,638,657	-		IAI47_12520	0.11	-0.7
2,638,657	-		IAI47_12520	0.11	-0.7
2,638,657	-		IAI47_12520	0.11	+0.5
2,638,699	+		IAI47_12520	0.21	+3.0
2,638,699	+		IAI47_12520	0.21	-0.3
2,638,699	+				+0.3
2,638,699	+		IAI47_12520	0.21	-0.5
2,638,700	-		IAI47_12520	0.21	-0.2
2,638,700	-		IAI47_12520	0.21	+0.1
2,638,700	-		IAI47_12520	0.21	-0.2
2,638,700	-		IAI47_12520	0.21	-0.7
2,638,700	-		IAI47_12520	0.21	-1.8
2,638,710	+		IAI47_12520	0.24	+1.9
2,638,711	-		IAI47_12520	0.24	+0.3
2,638,711	-		IAI47_12520	0.24	+0.8
2,638,711	-		IAI47_12520	0.24	-0.4
2,638,711	-		IAI47_12520	0.24	-1.7
2,638,711	-		IAI47_12520	0.24	+1.0
2,638,791	+		IAI47_12520	0.44	+0.3
2,638,791	+		IAI47_12520	0.44	-0.1
2,638,839	+		IAI47_12520	0.57	+0.3
2,638,870	+		IAI47_12520	0.64	-1.1
2,638,871	-		IAI47_12520	0.65	-0.3
2,638,871	-		IAI47_12520	0.65	-0.2
2,638,891	+		IAI47_12520	0.70	-1.6
2,638,900	+		IAI47_12520	0.72	-0.7
2,638,900	+		IAI47_12520	0.72	+0.3
2,638,901	-		IAI47_12520	0.72	+0.4
2,639,142	+		IAI47_12525	0.16	+0.2
2,639,142	+		IAI47_12525	0.16	+1.1
2,639,143	-		IAI47_12525	0.16	-0.1
2,639,143	-		IAI47_12525	0.16	-0.0
2,639,143	-		IAI47_12525	0.16	-1.1
2,639,190	+		IAI47_12525	0.22	+0.0
2,639,190	+		IAI47_12525	0.22	+0.9
2,639,190	+		IAI47_12525	0.22	-0.0
2,639,338	+		IAI47_12525	0.40	-0.6
2,639,338	+		IAI47_12525	0.40	-1.4
2,639,339	-		IAI47_12525	0.41	-0.3
2,639,339	-		IAI47_12525	0.41	-0.7
2,639,339	-		IAI47_12525	0.41	+0.7
2,639,343	-		IAI47_12525	0.41	+1.3
2,639,343	-		IAI47_12525	0.41	-1.2
2,639,343	-		IAI47_12525	0.41	-0.7
2,639,389	+		IAI47_12525	0.47	+0.1
2,639,390	-		IAI47_12525	0.47	-2.1
2,639,505	-		IAI47_12525	0.61	+0.6
2,639,817	+				+0.3
2,639,817	+				+0.0
2,639,838	+				-0.5
2,639,838	+				+0.2
2,639,838	+				-1.5
2,639,838	+				+1.9
2,639,838	+				-0.8
2,639,839	-				-0.5
2,639,839	-				-0.4
2,639,839	-				+1.0
2,639,839	-				-1.7
2,639,856	+				+0.2
2,639,922	+		IAI47_12530	0.16	+1.5
2,639,922	+		IAI47_12530	0.16	-0.6
2,639,922	+		IAI47_12530	0.16	-0.8
2,639,922	+		IAI47_12530	0.16	-0.7
2,639,922	+		IAI47_12530	0.16	-0.1
2,639,922	+		IAI47_12530	0.16	-0.1
2,639,922	+		IAI47_12530	0.16	-0.5
2,639,923	-		IAI47_12530	0.16	+0.2
2,639,923	-		IAI47_12530	0.16	+2.1
2,639,923	-		IAI47_12530	0.16	-0.5
2,639,923	-		IAI47_12530	0.16	+0.8
2,639,925	+		IAI47_12530	0.17	-0.8
2,639,925	+		IAI47_12530	0.17	+1.6
2,639,925	+		IAI47_12530	0.17	-0.5
2,639,925	+		IAI47_12530	0.17	-0.4
2,639,925	+		IAI47_12530	0.17	+0.8
2,639,925	+		IAI47_12530	0.17	-0.5
2,639,925	+		IAI47_12530	0.17	+1.3
2,639,925	+		IAI47_12530	0.17	+0.7
2,639,925	+		IAI47_12530	0.17	+0.3
2,639,925	+		IAI47_12530	0.17	+1.3
2,639,926	-		IAI47_12530	0.17	+1.3
2,639,926	-		IAI47_12530	0.17	-0.8
2,639,926	-		IAI47_12530	0.17	-0.0
2,639,958	+		IAI47_12530	0.23	+0.2