Strain Fitness in Pantoea sp. MT58 around IAI47_08025

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,693,677	+		IAI47_08015	0.79	+2.1
1,693,678	-		IAI47_08015	0.79	+0.7
1,693,678	-		IAI47_08015	0.79	+2.2
1,693,694	+		IAI47_08015	0.81	+1.7
1,693,829	+				+1.9
1,693,829	+				+1.6
1,693,830	-				-0.3
1,693,830	-				+0.6
1,693,830	-				+1.1
1,693,830	-				+1.3
1,693,933	+				+1.4
1,693,933	+				+1.3
1,693,933	+				+2.3
1,693,934	-				+0.6
1,693,934	-				+1.7
1,693,934	-				+3.1
1,693,934	-				+1.8
1,693,934	-				+0.7
1,693,962	-				+2.9
1,693,962	-				+1.2
1,694,130	+		IAI47_08020	0.24	+1.5
1,694,130	+		IAI47_08020	0.24	+2.3
1,694,130	+		IAI47_08020	0.24	+2.0
1,694,130	+		IAI47_08020	0.24	+1.4
1,694,130	+		IAI47_08020	0.24	+1.7
1,694,131	-		IAI47_08020	0.24	+1.6
1,694,131	-		IAI47_08020	0.24	+0.9
1,694,131	-		IAI47_08020	0.24	+1.3
1,694,137	+		IAI47_08020	0.25	+1.3
1,694,137	+		IAI47_08020	0.25	+1.2
1,694,137	+		IAI47_08020	0.25	+1.3
1,694,137	+		IAI47_08020	0.25	+1.8
1,694,138	-		IAI47_08020	0.25	+2.1
1,694,138	-		IAI47_08020	0.25	+1.1
1,694,138	-		IAI47_08020	0.25	+2.0
1,694,197	+		IAI47_08020	0.34	+0.7
1,694,198	-		IAI47_08020	0.34	+1.3
1,694,216	-		IAI47_08020	0.37	+1.8
1,694,226	+		IAI47_08020	0.38	+1.5
1,694,233	+		IAI47_08020	0.39	+0.2
1,694,233	+		IAI47_08020	0.39	+2.0
1,694,233	+		IAI47_08020	0.39	+1.9
1,694,234	-		IAI47_08020	0.39	+1.6
1,694,234	-		IAI47_08020	0.39	+1.3
1,694,307	+		IAI47_08020	0.50	-0.5
1,694,468	+		IAI47_08020	0.73	+2.0
1,694,605	+				+1.6
1,694,605	+				+1.0
1,694,605	+				+1.2
1,694,605	+				+0.7
1,694,658	+				+2.7
1,694,658	+				+0.5
1,694,658	+				-0.0
1,694,658	+				+0.9
1,694,659	-				+1.1
1,694,659	-				+1.8
1,694,687	-				+0.7
1,694,755	+		IAI47_08025	0.10	+1.0
1,694,755	+		IAI47_08025	0.10	+2.5
1,694,755	+		IAI47_08025	0.10	+1.4
1,694,755	+		IAI47_08025	0.10	+0.7
1,694,756	-		IAI47_08025	0.11	+1.1
1,694,756	-		IAI47_08025	0.11	+0.5
1,694,756	-		IAI47_08025	0.11	+2.3
1,695,091	+		IAI47_08025	0.44	+1.1
1,695,091	+		IAI47_08025	0.44	+1.1
1,695,092	-		IAI47_08025	0.44	+1.5
1,695,092	-		IAI47_08025	0.44	+1.2
1,695,166	+		IAI47_08025	0.52	+1.5
1,695,167	-		IAI47_08025	0.52	+1.7
1,695,215	-		IAI47_08025	0.57	+1.5
1,695,283	+		IAI47_08025	0.64	+0.7
1,695,284	-		IAI47_08025	0.64	+1.4
1,695,310	+		IAI47_08025	0.66	+2.0
1,695,311	-		IAI47_08025	0.66	+0.7
1,695,420	+		IAI47_08025	0.77	+0.0
1,695,420	+		IAI47_08025	0.77	+0.1
1,695,433	+		IAI47_08025	0.79	+2.1
1,695,433	+		IAI47_08025	0.79	+2.1
1,695,433	+		IAI47_08025	0.79	+0.9
1,695,433	+		IAI47_08025	0.79	+0.5
1,695,434	-		IAI47_08025	0.79	+1.1
1,695,434	-		IAI47_08025	0.79	-0.0
1,695,517	+		IAI47_08025	0.87	+2.8
1,695,517	+		IAI47_08025	0.87	+0.2
1,695,517	+		IAI47_08025	0.87	+1.6
1,695,517	+		IAI47_08025	0.87	+1.6
1,695,518	-		IAI47_08025	0.87	+1.1
1,695,536	-		IAI47_08025	0.89	+0.6
1,695,536	-		IAI47_08025	0.89	+1.5
1,695,536	-		IAI47_08025	0.89	+1.5
1,695,536	-		IAI47_08025	0.89	+0.7
1,695,643	+				+1.8
1,695,643	+				+2.5
1,695,643	+				+1.1
1,695,643	+				+0.4
1,695,644	-				+2.2
1,695,644	-				+1.1
1,695,644	-				+0.9
1,695,644	-				+1.0
1,695,644	-				+0.9
1,695,644	-				+1.1
1,695,651	+				+1.7
1,695,671	-				+3.2
1,695,671	-				+1.5
1,695,756	+				+1.3
1,695,756	+				+1.9
1,695,756	+				+0.9
1,695,756	+				+1.6
1,695,757	-				+1.0
1,695,757	-				+1.8
1,695,757	-				+0.9
1,695,757	-				+2.1
1,695,757	-				+1.7
1,695,795	+				+2.4
1,695,796	-				+1.8
1,695,796	-				+1.8
1,695,796	-				+0.8
1,695,796	-				+1.3
1,695,942	+		IAI47_08030	0.17	+2.9
1,695,942	+		IAI47_08030	0.17	+1.8
1,696,020	+		IAI47_08030	0.22	+0.1
1,696,021	-		IAI47_08030	0.22	+0.8
1,696,021	-		IAI47_08030	0.22	+0.5
1,696,068	-		IAI47_08030	0.25	+1.5
1,696,068	-		IAI47_08030	0.25	+0.9
1,696,140	+		IAI47_08030	0.29	+1.6
1,696,140	+		IAI47_08030	0.29	+0.5
1,696,140	+		IAI47_08030	0.29	+0.6
1,696,140	+		IAI47_08030	0.29	+2.0
1,696,141	-		IAI47_08030	0.29	+1.1
1,696,141	-		IAI47_08030	0.29	+4.4
1,696,141	-		IAI47_08030	0.29	+0.7
1,696,186	+		IAI47_08030	0.32	+0.6
1,696,186	+		IAI47_08030	0.32	+3.3
1,696,235	+		IAI47_08030	0.34	+0.3
1,696,235	+		IAI47_08030	0.34	+0.4
1,696,235	+		IAI47_08030	0.34	+3.3
1,696,235	+		IAI47_08030	0.34	+1.0
1,696,235	+		IAI47_08030	0.34	+2.1
1,696,235	+		IAI47_08030	0.34	+1.6
1,696,236	-		IAI47_08030	0.34	+1.1
1,696,323	+		IAI47_08030	0.40	+2.9
1,696,464	+		IAI47_08030	0.48	+0.5
1,696,464	+		IAI47_08030	0.48	+0.9
1,696,465	-		IAI47_08030	0.48	+0.3
1,696,465	-		IAI47_08030	0.48	+1.9
1,696,465	-		IAI47_08030	0.48	+1.1
1,696,500	+		IAI47_08030	0.50	+2.4
1,696,501	-		IAI47_08030	0.50	+1.9
1,696,501	-		IAI47_08030	0.50	+1.7
1,696,515	-		IAI47_08030	0.51	+1.4
1,696,515	-		IAI47_08030	0.51	+1.4
1,696,515	-		IAI47_08030	0.51	-0.1
1,696,614	+		IAI47_08030	0.56	+1.5
1,696,614	+		IAI47_08030	0.56	+1.2
1,696,614	+		IAI47_08030	0.56	+2.7
1,696,614	+		IAI47_08030	0.56	+1.6
1,696,614	+		IAI47_08030	0.56	+1.1
1,696,615	-		IAI47_08030	0.56	+2.7
1,696,615	-		IAI47_08030	0.56	+2.3