Strain Fitness in Pantoea sp. MT58 around IAI47_08010

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,691,135	-		IAI47_08005	0.21	+1.5
1,691,135	-		IAI47_08005	0.21	+1.5
1,691,152	+		IAI47_08005	0.23	+1.1
1,691,153	-		IAI47_08005	0.23	+0.9
1,691,179	+		IAI47_08005	0.25	+0.6
1,691,179	+		IAI47_08005	0.25	+0.6
1,691,180	-		IAI47_08005	0.25	+1.2
1,691,180	-		IAI47_08005	0.25	+0.2
1,691,407	+		IAI47_08005	0.43	+1.1
1,691,407	+		IAI47_08005	0.43	+0.9
1,691,446	+		IAI47_08005	0.46	+1.0
1,691,447	-		IAI47_08005	0.46	+1.0
1,691,447	-		IAI47_08005	0.46	+1.7
1,691,452	+		IAI47_08005	0.46	+2.1
1,691,452	+		IAI47_08005	0.46	+1.6
1,691,452	+		IAI47_08005	0.46	+1.0
1,691,452	+		IAI47_08005	0.46	+1.2
1,691,452	+		IAI47_08005	0.46	+0.6
1,691,453	-		IAI47_08005	0.46	+1.0
1,691,453	-		IAI47_08005	0.46	-0.0
1,691,453	-		IAI47_08005	0.46	+2.4
1,691,453	-		IAI47_08005	0.46	+0.7
1,691,453	-		IAI47_08005	0.46	+2.2
1,691,479	+		IAI47_08005	0.48	+0.9
1,691,479	+		IAI47_08005	0.48	+2.8
1,691,479	+		IAI47_08005	0.48	+2.6
1,691,480	-		IAI47_08005	0.49	+0.5
1,691,480	-		IAI47_08005	0.49	+0.7
1,691,790	-		IAI47_08005	0.73	+0.8
1,691,816	-		IAI47_08005	0.75	+1.2
1,691,842	+		IAI47_08005	0.77	+1.3
1,691,842	+		IAI47_08005	0.77	+1.2
1,691,845	+		IAI47_08005	0.77	+4.2
1,691,846	-		IAI47_08005	0.77	+1.6
1,691,857	+		IAI47_08005	0.78	+1.4
1,692,091	+				+0.8
1,692,092	-				+1.3
1,692,112	+				-0.4
1,692,112	+				+1.1
1,692,112	+				+0.6
1,692,112	+				+0.6
1,692,113	-				+1.6
1,692,113	-				+1.6
1,692,113	-				+2.2
1,692,124	+				+0.3
1,692,125	-				+0.6
1,692,125	-				+0.7
1,692,203	-		IAI47_08010	0.17	+1.3
1,692,240	-		IAI47_08010	0.25	+2.1
1,692,240	-		IAI47_08010	0.25	+2.6
1,692,240	-		IAI47_08010	0.25	+1.2
1,692,306	+		IAI47_08010	0.40	+1.4
1,692,306	+		IAI47_08010	0.40	+1.1
1,692,307	-		IAI47_08010	0.41	+1.4
1,692,318	+		IAI47_08010	0.43	+0.9
1,692,319	-		IAI47_08010	0.43	+0.8
1,692,354	+		IAI47_08010	0.51	+1.4
1,692,354	+		IAI47_08010	0.51	+1.2
1,692,365	+		IAI47_08010	0.54	+0.9
1,692,366	-		IAI47_08010	0.54	+0.6
1,692,366	-		IAI47_08010	0.54	+1.3
1,692,366	-		IAI47_08010	0.54	+0.7
1,692,366	-		IAI47_08010	0.54	+1.3
1,692,402	+		IAI47_08010	0.62	+2.0
1,692,402	+		IAI47_08010	0.62	+2.1
1,692,402	+		IAI47_08010	0.62	+1.6
1,692,402	+		IAI47_08010	0.62	-0.1
1,692,403	-		IAI47_08010	0.62	+2.2
1,692,403	-		IAI47_08010	0.62	+1.6
1,692,403	-		IAI47_08010	0.62	+0.7
1,692,403	-		IAI47_08010	0.62	+1.4
1,692,425	+		IAI47_08010	0.67	+1.8
1,692,437	+		IAI47_08010	0.70	+1.6
1,692,500	+		IAI47_08010	0.84	+1.5
1,692,500	+		IAI47_08010	0.84	-0.7
1,692,500	+		IAI47_08010	0.84	+1.5
1,692,500	+		IAI47_08010	0.84	+0.3
1,692,501	-		IAI47_08010	0.84	+1.8
1,692,501	-		IAI47_08010	0.84	+0.3
1,692,501	-		IAI47_08010	0.84	+1.1
1,692,501	-		IAI47_08010	0.84	+2.0
1,692,501	-		IAI47_08010	0.84	+1.5
1,692,501	-		IAI47_08010	0.84	-0.0
1,692,546	+				+2.0
1,692,546	+				+1.3
1,692,547	-				+1.5
1,692,547	-				+1.8
1,692,547	-				+1.5
1,692,577	+				+2.1
1,692,578	-				-0.3
1,692,587	+				+1.5
1,692,587	+				-0.7
1,692,588	-				-0.4
1,692,588	-				-1.5
1,692,588	-				-1.3
1,692,639	+				+1.0
1,692,706	+				+1.5
1,692,735	+		IAI47_08015	0.11	+2.8
1,692,736	-		IAI47_08015	0.11	+1.8
1,692,736	-		IAI47_08015	0.11	+2.3
1,692,736	-		IAI47_08015	0.11	+0.5
1,692,736	-		IAI47_08015	0.11	+2.0
1,692,790	+		IAI47_08015	0.15	+1.7
1,692,811	-		IAI47_08015	0.16	+2.5
1,692,811	-		IAI47_08015	0.16	+1.7
1,692,811	-		IAI47_08015	0.16	+1.3
1,692,985	+		IAI47_08015	0.29	+1.2
1,692,986	-		IAI47_08015	0.29	+2.4
1,692,986	-		IAI47_08015	0.29	+1.1
1,692,986	-		IAI47_08015	0.29	+2.5
1,692,986	-		IAI47_08015	0.29	+2.1
1,692,988	-		IAI47_08015	0.29	+1.7
1,692,988	-		IAI47_08015	0.29	+1.2
1,692,988	-		IAI47_08015	0.29	+1.2
1,692,988	-		IAI47_08015	0.29	+0.9
1,692,988	-		IAI47_08015	0.29	+1.0
1,693,153	+		IAI47_08015	0.41	-0.2
1,693,209	+		IAI47_08015	0.45	+0.6
1,693,209	+		IAI47_08015	0.45	+0.3
1,693,226	-		IAI47_08015	0.46	-0.0
1,693,226	-		IAI47_08015	0.46	+1.4
1,693,355	+		IAI47_08015	0.56	+1.1
1,693,356	-		IAI47_08015	0.56	+4.4
1,693,371	+		IAI47_08015	0.57	+1.5
1,693,371	+		IAI47_08015	0.57	+2.1
1,693,403	-		IAI47_08015	0.59	+1.9
1,693,432	+		IAI47_08015	0.61	+2.3
1,693,432	+		IAI47_08015	0.61	+1.7
1,693,432	+		IAI47_08015	0.61	+2.9
1,693,432	+		IAI47_08015	0.61	+2.3
1,693,432	+		IAI47_08015	0.61	+0.8
1,693,432	+		IAI47_08015	0.61	+1.5
1,693,433	-		IAI47_08015	0.61	+1.8
1,693,433	-		IAI47_08015	0.61	+1.3
1,693,433	-		IAI47_08015	0.61	+1.6
1,693,433	-		IAI47_08015	0.61	+1.9
1,693,433	-		IAI47_08015	0.61	+1.2
1,693,433	-		IAI47_08015	0.61	+3.1
1,693,465	+		IAI47_08015	0.64	+0.9
1,693,465	+		IAI47_08015	0.64	+1.3
1,693,466	-		IAI47_08015	0.64	+2.0
1,693,466	-		IAI47_08015	0.64	+1.6
1,693,507	+		IAI47_08015	0.67	+1.5
1,693,508	-		IAI47_08015	0.67	+1.2