Strain Fitness in Pantoea sp. MT58 around IAI47_07750

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,642,148	+				-1.7
1,642,148	+				+1.5
1,642,148	+				+0.6
1,642,148	+				+0.2
1,642,148	+				+0.7
1,642,149	-				-0.9
1,642,149	-				-0.4
1,642,149	-				-0.1
1,642,149	-				+2.0
1,642,149	-				-1.0
1,642,149	-				-1.3
1,642,149	-				+0.1
1,642,151	+				-0.1
1,642,151	+				-1.0
1,642,151	+				+0.3
1,642,151	+				+0.6
1,642,151	+				-0.5
1,642,151	+				+0.5
1,642,152	-				-2.7
1,642,152	-				-0.5
1,642,152	-				+1.0
1,642,152	-				-0.3
1,642,152	-				-0.3
1,642,152	-				+0.9
1,642,152	-				-1.5
1,642,152	-				-0.9
1,642,358	+		IAI47_07745	0.23	+0.3
1,642,359	-		IAI47_07745	0.23	-2.0
1,642,504	-		IAI47_07745	0.41	+1.1
1,642,504	-		IAI47_07745	0.41	+1.0
1,642,507	+		IAI47_07745	0.41	+0.5
1,642,507	+		IAI47_07745	0.41	-2.3
1,642,507	+		IAI47_07745	0.41	-0.1
1,642,507	+		IAI47_07745	0.41	+0.3
1,642,507	+		IAI47_07745	0.41	+0.3
1,642,508	-		IAI47_07745	0.41	-0.1
1,642,508	-		IAI47_07745	0.41	-0.3
1,642,508	-		IAI47_07745	0.41	-1.1
1,642,508	-		IAI47_07745	0.41	+2.6
1,642,508	-		IAI47_07745	0.41	+0.1
1,642,508	-		IAI47_07745	0.41	-0.2
1,642,508	-		IAI47_07745	0.41	+1.9
1,642,508	-		IAI47_07745	0.41	-0.5
1,642,546	+		IAI47_07745	0.46	+1.3
1,642,547	-		IAI47_07745	0.46	+0.3
1,642,615	+		IAI47_07745	0.54	-0.5
1,642,616	-		IAI47_07745	0.54	+0.3
1,642,642	+		IAI47_07745	0.58	-1.3
1,642,688	-		IAI47_07745	0.63	+2.8
1,642,701	+		IAI47_07745	0.65	+0.9
1,642,702	-		IAI47_07745	0.65	+0.1
1,642,740	+		IAI47_07745	0.70	-0.0
1,642,741	-		IAI47_07745	0.70	-0.9
1,642,746	+		IAI47_07745	0.70	+1.1
1,642,747	-		IAI47_07745	0.71	+1.7
1,642,799	+		IAI47_07745	0.77	+0.3
1,642,799	+		IAI47_07745	0.77	-0.3
1,642,800	-		IAI47_07745	0.77	+0.7
1,642,830	+		IAI47_07745	0.81	-1.1
1,642,917	+				+0.4
1,642,942	+				+0.6
1,642,942	+				-1.0
1,642,942	+				+2.2
1,642,942	+				-0.3
1,642,943	-				-0.2
1,642,943	-				+0.0
1,642,943	-				-0.4
1,642,943	-				-0.5
1,642,951	+				+0.1
1,642,952	-				+0.1
1,642,952	-				+1.3
1,642,952	-				-0.4
1,642,999	+				+0.9
1,643,000	-				-0.1
1,643,004	+				-0.8
1,643,005	-				-1.1
1,643,014	+				-0.5
1,643,014	+				-0.1
1,643,014	+				+2.3
1,643,014	+				-0.3
1,643,015	-				-1.4
1,643,015	-				-0.5
1,643,071	+				+0.7
1,643,092	+				+1.6
1,643,092	+				+0.3
1,643,093	-				+1.3
1,643,093	-				+0.9
1,643,093	-				-1.3
1,643,093	-				-0.8
1,643,114	-				-0.1
1,643,114	-				+1.6
1,643,143	+				-0.4
1,643,166	+				-0.1
1,643,226	+		IAI47_07750	0.13	+0.3
1,643,351	-		IAI47_07750	0.30	-0.2
1,643,364	+		IAI47_07750	0.32	-0.7
1,643,364	+		IAI47_07750	0.32	+0.3
1,643,364	+		IAI47_07750	0.32	+0.3
1,643,364	+		IAI47_07750	0.32	+4.2
1,643,364	+		IAI47_07750	0.32	-0.3
1,643,364	+		IAI47_07750	0.32	-0.7
1,643,364	+		IAI47_07750	0.32	-0.4
1,643,364	+		IAI47_07750	0.32	-0.3
1,643,365	-		IAI47_07750	0.32	+1.1
1,643,365	-		IAI47_07750	0.32	-0.6
1,643,365	-		IAI47_07750	0.32	-0.7
1,643,365	-		IAI47_07750	0.32	+0.9
1,643,371	-		IAI47_07750	0.33	-1.8
1,643,452	+		IAI47_07750	0.44	+4.7
1,643,564	+		IAI47_07750	0.60	+1.6
1,643,638	+		IAI47_07750	0.70	+1.7
1,643,681	+		IAI47_07750	0.76	+0.6
1,643,796	+				+0.3
1,643,797	-				-1.2
1,643,847	+				+3.6
1,643,847	+				-0.0
1,643,848	-				+0.6
1,643,848	-				-0.1
1,644,086	+		IAI47_07755	0.53	+1.0
1,644,087	-		IAI47_07755	0.53	-0.1
1,644,092	+		IAI47_07755	0.54	-2.0
1,644,092	+		IAI47_07755	0.54	+4.0
1,644,093	-		IAI47_07755	0.55	+0.4
1,644,093	-		IAI47_07755	0.55	-1.4
1,644,093	-		IAI47_07755	0.55	+0.7
1,644,093	-		IAI47_07755	0.55	-0.1
1,644,093	-		IAI47_07755	0.55	-0.5
1,644,093	-		IAI47_07755	0.55	-0.3
1,644,093	-		IAI47_07755	0.55	-0.3
1,644,190	+		IAI47_07755	0.76	+2.3
1,644,190	+		IAI47_07755	0.76	-0.3
1,644,190	+		IAI47_07755	0.76	+0.6
1,644,190	+		IAI47_07755	0.76	+0.3
1,644,191	-		IAI47_07755	0.77	+1.5
1,644,191	-		IAI47_07755	0.77	-0.8
1,644,193	+		IAI47_07755	0.77	-0.4
1,644,262	-				-0.7
1,644,289	+				-0.7
1,644,289	+				-1.1
1,644,290	-				+0.7
1,644,290	-				+0.5
1,644,290	-				-1.5
1,644,302	+				+0.6
1,644,302	+				+0.5
1,644,303	-				-0.8
1,644,303	-				+0.6
1,644,315	+				+0.2
1,644,315	+				-0.4
1,644,513	+		IAI47_07760	0.38	-0.7
1,644,514	-		IAI47_07760	0.38	-0.0
1,644,627	+		IAI47_07760	0.58	+0.9
1,644,627	+		IAI47_07760	0.58	+0.7
1,644,627	+		IAI47_07760	0.58	-0.9
1,644,627	+		IAI47_07760	0.58	-0.7
1,644,627	+		IAI47_07760	0.58	-0.1
1,644,628	-		IAI47_07760	0.58	-0.0
1,644,628	-		IAI47_07760	0.58	+0.7
1,644,729	+		IAI47_07760	0.75	-0.0
1,644,729	+		IAI47_07760	0.75	-1.1
1,644,729	+		IAI47_07760	0.75	-0.0
1,644,730	-		IAI47_07760	0.76	-0.3
1,644,730	-		IAI47_07760	0.76	+0.2