Strain Fitness in Pantoea sp. MT58 around IAI47_07735

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,639,182	+		IAI47_07725	0.88	+0.9
1,639,194	+		IAI47_07725	0.89	-0.2
1,639,194	+		IAI47_07725	0.89	-0.2
1,639,195	-		IAI47_07725	0.89	+1.2
1,639,195	-		IAI47_07725	0.89	+0.6
1,639,204	-		IAI47_07725	0.89	+0.3
1,639,204	-		IAI47_07725	0.89	+1.1
1,639,216	+				-0.4
1,639,216	+				+0.0
1,639,286	+				-1.7
1,639,286	+				+0.5
1,639,287	-				+0.9
1,639,359	+				-0.0
1,639,359	+				+1.3
1,639,359	+				+0.9
1,639,359	+				-0.0
1,639,360	-				+0.3
1,639,360	-				-0.7
1,639,393	+				+0.3
1,639,393	+				-0.9
1,639,393	+				+0.6
1,639,393	+				+2.1
1,639,394	-				-0.1
1,639,394	-				+1.0
1,639,394	-				+1.8
1,639,394	-				-0.7
1,639,416	+				+1.1
1,639,416	+				-0.3
1,639,416	+				+1.1
1,639,416	+				+0.3
1,639,417	-				+0.1
1,639,417	-				-0.7
1,639,417	-				-0.7
1,639,437	-				-0.9
1,639,455	+				-0.7
1,639,455	+				+0.3
1,639,455	+				+0.3
1,639,456	-				-0.3
1,639,512	+				-0.6
1,639,513	-				+2.3
1,639,573	-		IAI47_07730	0.10	+0.9
1,639,584	-		IAI47_07730	0.12	-1.3
1,639,602	-		IAI47_07730	0.16	+1.6
1,639,618	+		IAI47_07730	0.19	-2.3
1,639,618	+		IAI47_07730	0.19	-0.9
1,639,619	-		IAI47_07730	0.19	-1.7
1,639,619	-		IAI47_07730	0.19	-1.3
1,639,619	-		IAI47_07730	0.19	-0.4
1,639,656	+		IAI47_07730	0.27	-0.2
1,639,656	+		IAI47_07730	0.27	+0.3
1,639,657	-		IAI47_07730	0.27	-0.7
1,639,686	+		IAI47_07730	0.33	+0.3
1,639,686	+		IAI47_07730	0.33	+1.3
1,639,687	-		IAI47_07730	0.33	+0.2
1,639,755	+		IAI47_07730	0.46	-0.7
1,639,764	-		IAI47_07730	0.48	-0.9
1,639,775	+		IAI47_07730	0.50	+0.3
1,639,775	+		IAI47_07730	0.50	+0.9
1,639,776	-		IAI47_07730	0.51	-0.2
1,639,776	-		IAI47_07730	0.51	-0.2
1,639,776	-		IAI47_07730	0.51	-1.2
1,639,776	-		IAI47_07730	0.51	-1.3
1,639,776	-		IAI47_07730	0.51	-0.0
1,639,776	-		IAI47_07730	0.51	+1.1
1,639,776	-		IAI47_07730	0.51	+0.1
1,639,790	+		IAI47_07730	0.53	-1.3
1,639,790	+		IAI47_07730	0.53	+0.0
1,639,790	+		IAI47_07730	0.53	+2.6
1,639,790	+		IAI47_07730	0.53	+1.5
1,639,791	-		IAI47_07730	0.54	+0.6
1,639,791	-		IAI47_07730	0.54	+0.6
1,639,791	-		IAI47_07730	0.54	-0.5
1,639,800	+		IAI47_07730	0.55	+1.6
1,639,800	+		IAI47_07730	0.55	-0.6
1,639,800	+		IAI47_07730	0.55	-1.0
1,639,821	+		IAI47_07730	0.60	-0.3
1,639,821	+		IAI47_07730	0.60	-0.6
1,639,822	-		IAI47_07730	0.60	+0.6
1,639,822	-		IAI47_07730	0.60	-0.3
1,639,855	+		IAI47_07730	0.66	+0.9
1,639,855	+		IAI47_07730	0.66	-0.0
1,639,856	-		IAI47_07730	0.66	+0.7
1,639,856	-		IAI47_07730	0.66	-0.6
1,639,856	-		IAI47_07730	0.66	+0.0
1,639,856	-		IAI47_07730	0.66	-0.8
1,639,867	+		IAI47_07730	0.69	+1.1
1,639,868	-		IAI47_07730	0.69	+0.9
1,639,868	-		IAI47_07730	0.69	-0.0
1,639,907	+		IAI47_07730	0.77	+0.0
1,639,938	+		IAI47_07730	0.83	-0.5
1,639,938	+		IAI47_07730	0.83	-0.2
1,639,938	+		IAI47_07730	0.83	+1.3
1,639,939	-		IAI47_07730	0.83	-1.5
1,639,942	+		IAI47_07730	0.84	+1.9
1,639,942	+		IAI47_07730	0.84	+1.0
1,639,943	-		IAI47_07730	0.84	+0.3
1,639,943	-		IAI47_07730	0.84	+0.2
1,639,943	-		IAI47_07730	0.84	-0.3
1,639,965	+		IAI47_07730	0.88	+0.5
1,639,966	-		IAI47_07730	0.88	+1.0
1,640,013	+				+1.8
1,640,013	+				+0.5
1,640,013	+				+1.0
1,640,014	-				+0.9
1,640,014	-				+0.3
1,640,014	-				-0.3
1,640,014	-				+0.9
1,640,017	+				-0.2
1,640,017	+				-0.5
1,640,017	+				+1.0
1,640,017	+				-0.0
1,640,017	+				+0.3
1,640,017	+				+0.1
1,640,017	+				-1.5
1,640,017	+				+0.1
1,640,017	+				+0.5
1,640,018	-				+1.1
1,640,018	-				+1.1
1,640,018	-				+0.9
1,640,018	-				-0.8
1,640,018	-				+0.9
1,640,018	-				-0.4
1,640,018	-				-0.8
1,640,038	+				+1.9
1,640,038	+				+0.5
1,640,038	+				+1.1
1,640,057	+				+2.1
1,640,095	+				+1.9
1,640,101	+				+0.0
1,640,101	+				-1.0
1,640,101	+				-0.7
1,640,101	+				+0.1
1,640,101	+				+0.1
1,640,102	-				-1.0
1,640,102	-				-0.6
1,640,102	-				-0.5
1,640,102	-				-0.8
1,640,109	-				+1.4
1,640,109	-				+0.3
1,640,109	-				-1.4
1,640,109	-				+0.3
1,640,147	+				+0.8
1,640,147	+				+0.5
1,640,147	+				+0.1
1,640,148	-				-1.0
1,640,148	-				+0.6
1,640,161	+				+0.6
1,640,161	+				-1.7
1,640,161	+				+0.6
1,640,161	+				+2.5
1,640,161	+				+0.6
1,640,162	-				-0.7
1,640,162	-				-1.1
1,640,162	-				-0.4
1,640,162	-				-0.1
1,640,162	-				-0.3
1,640,162	-				+0.3
1,640,165	+				-0.1
1,640,165	+				-2.3
1,640,166	-				+0.0
1,640,186	+				-0.7
1,640,186	+				-1.7
1,640,186	+				-0.3
1,640,266	-		IAI47_07735	0.17	-0.9
1,640,280	-		IAI47_07735	0.19	-0.6
1,640,280	-		IAI47_07735	0.19	+2.9
1,640,327	-		IAI47_07735	0.27	-0.7
1,640,387	+		IAI47_07735	0.36	-0.1
1,640,388	-		IAI47_07735	0.36	+0.9
1,640,388	-		IAI47_07735	0.36	+0.4
1,640,400	-		IAI47_07735	0.38	-0.7
1,640,413	+		IAI47_07735	0.40	-0.1
1,640,424	+		IAI47_07735	0.42	+2.3
1,640,424	+		IAI47_07735	0.42	-0.0
1,640,425	-		IAI47_07735	0.42	+0.9
1,640,425	-		IAI47_07735	0.42	+0.3
1,640,425	-		IAI47_07735	0.42	-0.3
1,640,425	-		IAI47_07735	0.42	-0.9
1,640,425	-		IAI47_07735	0.42	-0.3
1,640,454	-		IAI47_07735	0.47	+0.8
1,640,454	-		IAI47_07735	0.47	+0.8
1,640,509	+		IAI47_07735	0.55	-0.7
1,640,509	+		IAI47_07735	0.55	+0.0
1,640,509	+		IAI47_07735	0.55	+2.1
1,640,509	+		IAI47_07735	0.55	+0.0
1,640,510	-		IAI47_07735	0.56	+1.5
1,640,510	-		IAI47_07735	0.56	+0.5
1,640,510	-		IAI47_07735	0.56	-0.5
1,640,510	-		IAI47_07735	0.56	-1.0
1,640,510	-		IAI47_07735	0.56	-0.5
1,640,510	-		IAI47_07735	0.56	-0.7
1,640,519	-		IAI47_07735	0.57	+0.7
1,640,558	+		IAI47_07735	0.63	+4.1
1,640,558	+		IAI47_07735	0.63	+1.3
1,640,558	+		IAI47_07735	0.63	+1.2
1,640,558	+		IAI47_07735	0.63	-0.3
1,640,559	-		IAI47_07735	0.63	-1.9
1,640,559	-		IAI47_07735	0.63	+0.9
1,640,580	+		IAI47_07735	0.67	-0.3
1,640,581	-		IAI47_07735	0.67	-2.3
1,640,632	+		IAI47_07735	0.75	-1.9
1,640,633	-		IAI47_07735	0.75	-0.8
1,640,633	-		IAI47_07735	0.75	+1.3
1,640,677	+		IAI47_07735	0.82	+1.1
1,640,677	+		IAI47_07735	0.82	-0.7
1,640,678	-		IAI47_07735	0.82	+0.3
1,640,678	-		IAI47_07735	0.82	-0.9
1,640,678	-		IAI47_07735	0.82	-0.3
1,640,678	-		IAI47_07735	0.82	+1.0
1,640,678	-		IAI47_07735	0.82	-0.1
1,640,680	+		IAI47_07735	0.83	+1.5
1,640,681	-		IAI47_07735	0.83	+0.3
1,640,681	-		IAI47_07735	0.83	+0.7
1,640,681	-		IAI47_07735	0.83	+0.3
1,640,685	-		IAI47_07735	0.83	-0.6
1,640,685	-		IAI47_07735	0.83	+0.5
1,640,696	+		IAI47_07735	0.85	-0.4
1,640,785	+				-0.5
1,640,786	-				+0.6
1,640,786	-				-1.7
1,640,789	+				+0.9
1,640,789	+				-0.3
1,640,789	+				+1.3
1,640,789	+				+0.9
1,640,790	-				-0.4
1,640,801	+				+2.1
1,640,814	-				-1.0
1,640,829	-				-1.7
1,640,829	-				+1.1
1,640,835	+				+0.3
1,640,867	+				+0.1
1,640,867	+				+1.1
1,640,868	-				+0.3
1,640,878	-				+0.2
1,640,884	-				+0.9
1,640,929	+				-1.3
1,640,929	+				+0.1
1,640,941	-				+0.1
1,640,948	-				+0.6
1,640,983	-				+1.3
1,640,991	+				+0.6
1,641,059	+				+1.1
1,641,344	+				+2.2
1,641,345	-				-0.7
1,641,348	+				-0.2
1,641,360	+				-1.3
1,641,360	+				+1.1
1,641,361	-				+0.2
1,641,386	+				+0.2
1,641,386	+				-0.3
1,641,386	+				-0.3
1,641,387	-				-1.1
1,641,388	+				-1.2
1,641,408	+				+0.5
1,641,408	+				+1.0
1,641,447	-				-1.0
1,641,447	-				+0.7
1,641,461	+				-0.5
1,641,462	-				-0.8
1,641,482	+				-0.5
1,641,483	-				-0.5
1,641,483	-				+0.2
1,641,483	-				-1.1
1,641,483	-				-0.2
1,641,522	-				-1.1
1,641,525	+				+0.5
1,641,525	+				+0.6
1,641,539	+		IAI47_07740	0.10	+0.3
1,641,539	+		IAI47_07740	0.10	+1.6
1,641,540	-		IAI47_07740	0.11	-0.5
1,641,563	+		IAI47_07740	0.14	-0.9
1,641,563	+		IAI47_07740	0.14	+0.2
1,641,563	+		IAI47_07740	0.14	+0.3
1,641,564	-		IAI47_07740	0.14	-0.9
1,641,564	-		IAI47_07740	0.14	-2.3
1,641,564	-		IAI47_07740	0.14	+2.9
1,641,590	+		IAI47_07740	0.18	+1.9
1,641,590	+		IAI47_07740	0.18	-0.3
1,641,591	-		IAI47_07740	0.18	-1.0
1,641,606	+		IAI47_07740	0.20	+2.5
1,641,607	-		IAI47_07740	0.20	-1.5
1,641,607	-		IAI47_07740	0.20	+1.0
1,641,607	-		IAI47_07740	0.20	+2.0
1,641,607	-		IAI47_07740	0.20	-1.4
1,641,658	+		IAI47_07740	0.27	+0.3
1,641,659	-		IAI47_07740	0.27	+1.6
1,641,659	-		IAI47_07740	0.27	+0.9
1,641,663	+		IAI47_07740	0.28	+0.1
1,641,663	+		IAI47_07740	0.28	+0.9
1,641,664	-		IAI47_07740	0.28	+0.9
1,641,664	-		IAI47_07740	0.28	-0.8
1,641,664	-		IAI47_07740	0.28	+0.6
1,641,664	-		IAI47_07740	0.28	-1.1
1,641,707	-		IAI47_07740	0.34	+0.2
1,641,746	+		IAI47_07740	0.39	+0.2
1,641,747	-		IAI47_07740	0.39	+0.5