Strain Fitness in Pantoea sp. MT58 around IAI47_06210

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,262,466	+		IAI47_06200	0.65	-1.2
1,262,466	+		IAI47_06200	0.65	-2.1
1,262,467	-		IAI47_06200	0.65	-1.6
1,262,467	-		IAI47_06200	0.65	-2.0
1,262,469	+		IAI47_06200	0.65	-2.2
1,262,469	+		IAI47_06200	0.65	-1.2
1,262,470	-		IAI47_06200	0.65	-1.3
1,262,470	-		IAI47_06200	0.65	-0.6
1,262,470	-		IAI47_06200	0.65	-1.2
1,262,470	-		IAI47_06200	0.65	-1.2
1,262,470	-		IAI47_06200	0.65	+2.1
1,262,470	-		IAI47_06200	0.65	+0.4
1,262,606	+		IAI47_06200	0.74	+0.4
1,262,606	+		IAI47_06200	0.74	-1.1
1,262,606	+		IAI47_06200	0.74	-1.0
1,262,607	-		IAI47_06200	0.74	-0.1
1,262,607	-		IAI47_06200	0.74	-3.2
1,262,773	+		IAI47_06200	0.85	-0.2
1,262,773	+		IAI47_06200	0.85	+0.8
1,262,774	-		IAI47_06200	0.85	-1.1
1,262,774	-		IAI47_06200	0.85	-0.6
1,262,774	-		IAI47_06200	0.85	+0.1
1,262,774	-		IAI47_06200	0.85	+0.4
1,262,774	-		IAI47_06200	0.85	-0.6
1,262,787	-		IAI47_06200	0.86	-1.4
1,262,788	+		IAI47_06200	0.86	-0.7
1,262,788	+		IAI47_06200	0.86	-1.8
1,262,788	+		IAI47_06200	0.86	-0.2
1,262,788	+		IAI47_06200	0.86	-1.2
1,262,789	-		IAI47_06200	0.86	-1.1
1,262,826	+		IAI47_06200	0.89	-1.6
1,262,826	+		IAI47_06200	0.89	+1.1
1,262,827	-		IAI47_06200	0.89	-1.2
1,262,827	-		IAI47_06200	0.89	+0.4
1,262,913	-				-1.6
1,262,913	-				+0.1
1,262,913	-				-0.6
1,262,976	+				-0.0
1,262,977	-				-1.1
1,262,977	-				-1.0
1,262,990	+				-1.2
1,262,990	+				-1.2
1,262,991	-				-0.8
1,262,999	+				-0.8
1,262,999	+				-2.4
1,263,000	-				-1.8
1,263,000	-				+0.4
1,263,000	-				-0.0
1,263,008	+				+1.1
1,263,008	+				-1.2
1,263,009	-				-0.2
1,263,063	-		IAI47_06205	0.13	+2.4
1,263,063	-		IAI47_06205	0.13	-0.7
1,263,082	+		IAI47_06205	0.17	-0.0
1,263,083	-		IAI47_06205	0.18	+1.4
1,263,083	-		IAI47_06205	0.18	-0.6
1,263,194	+		IAI47_06205	0.43	-0.8
1,263,194	+		IAI47_06205	0.43	-1.8
1,263,194	+		IAI47_06205	0.43	-1.2
1,263,194	+		IAI47_06205	0.43	-0.8
1,263,195	-		IAI47_06205	0.44	-0.9
1,263,195	-		IAI47_06205	0.44	+0.4
1,263,195	-		IAI47_06205	0.44	+0.4
1,263,195	-		IAI47_06205	0.44	-0.9
1,263,195	-		IAI47_06205	0.44	+0.4
1,263,351	-		IAI47_06205	0.80	-0.2
1,263,351	-		IAI47_06205	0.80	-0.0
1,263,356	+		IAI47_06205	0.81	+0.4
1,263,356	+		IAI47_06205	0.81	+0.4
1,263,357	-		IAI47_06205	0.81	+0.4
1,263,357	-		IAI47_06205	0.81	-1.9
1,263,357	-		IAI47_06205	0.81	-0.6
1,263,379	+		IAI47_06205	0.86	-1.6
1,263,379	+		IAI47_06205	0.86	+0.4
1,263,379	+		IAI47_06205	0.86	-0.6
1,263,379	+		IAI47_06205	0.86	-1.4
1,263,379	+		IAI47_06205	0.86	-0.6
1,263,379	+		IAI47_06205	0.86	-0.6
1,263,380	-		IAI47_06205	0.86	-1.6
1,263,380	-		IAI47_06205	0.86	-1.1
1,263,380	-		IAI47_06205	0.86	-0.8
1,263,380	-		IAI47_06205	0.86	-0.3
1,263,380	-		IAI47_06205	0.86	+0.7
1,263,382	+		IAI47_06205	0.87	+0.4
1,263,382	+		IAI47_06205	0.87	+0.1
1,263,382	+		IAI47_06205	0.87	-1.6
1,263,383	-		IAI47_06205	0.87	-1.6
1,263,383	-		IAI47_06205	0.87	+0.4
1,263,383	-		IAI47_06205	0.87	-0.4
1,263,383	-		IAI47_06205	0.87	-1.7
1,263,383	-		IAI47_06205	0.87	-0.6
1,263,426	+				-2.6
1,263,452	+				-0.3
1,263,452	+				-0.7
1,263,452	+				+2.7
1,263,452	+				-0.6
1,263,452	+				-0.7
1,263,452	+				-1.6
1,263,488	+				-1.8
1,263,512	+				-1.4
1,263,512	+				-1.0
1,263,512	+				-1.5
1,263,512	+				-0.3
1,263,512	+				+0.2
1,263,512	+				-0.4
1,263,512	+				-0.8
1,263,512	+				-0.8
1,263,513	-				-0.2
1,263,513	-				-1.1
1,263,513	-				+0.8
1,263,562	-		IAI47_06210	0.11	+0.1
1,263,603	+		IAI47_06210	0.15	+0.4
1,263,627	-		IAI47_06210	0.18	-0.3
1,263,627	-		IAI47_06210	0.18	-0.6
1,263,656	+		IAI47_06210	0.21	-1.0
1,263,656	+		IAI47_06210	0.21	-0.6
1,263,656	+		IAI47_06210	0.21	-0.6
1,263,656	+		IAI47_06210	0.21	-3.4
1,263,656	+		IAI47_06210	0.21	-2.9
1,263,656	+		IAI47_06210	0.21	-1.0
1,263,656	+		IAI47_06210	0.21	-1.2
1,263,656	+		IAI47_06210	0.21	-1.3
1,263,656	+		IAI47_06210	0.21	-1.3
1,263,657	-		IAI47_06210	0.21	+0.8
1,263,657	-		IAI47_06210	0.21	-0.9
1,263,657	-		IAI47_06210	0.21	-2.4
1,263,657	-		IAI47_06210	0.21	+0.4
1,263,657	-		IAI47_06210	0.21	-0.2
1,263,660	-		IAI47_06210	0.21	-2.1
1,263,660	-		IAI47_06210	0.21	+0.4
1,263,687	+		IAI47_06210	0.24	-0.2
1,263,687	+		IAI47_06210	0.24	+0.2
1,263,687	+		IAI47_06210	0.24	-0.6
1,263,687	+		IAI47_06210	0.24	-0.9
1,263,687	+		IAI47_06210	0.24	-0.9
1,263,688	-		IAI47_06210	0.24	-2.9
1,263,688	-		IAI47_06210	0.24	-0.1
1,263,688	-		IAI47_06210	0.24	-1.9
1,263,688	-		IAI47_06210	0.24	-2.2
1,263,688	-		IAI47_06210	0.24	-0.8
1,263,760	+		IAI47_06210	0.31	-0.6
1,263,825	+		IAI47_06210	0.38	-2.2
1,263,825	+		IAI47_06210	0.38	+0.1
1,263,825	+		IAI47_06210	0.38	-0.8
1,263,826	-		IAI47_06210	0.38	-1.4
1,263,878	+		IAI47_06210	0.44	+0.4
1,263,879	-		IAI47_06210	0.44	-0.6
1,263,879	-		IAI47_06210	0.44	+2.4
1,263,879	-		IAI47_06210	0.44	-0.0
1,263,879	-		IAI47_06210	0.44	-3.3
1,264,053	+		IAI47_06210	0.61	-1.6
1,264,053	+		IAI47_06210	0.61	+1.0
1,264,054	-		IAI47_06210	0.61	-0.9
1,264,054	-		IAI47_06210	0.61	-1.8
1,264,058	+		IAI47_06210	0.62	-0.9
1,264,059	-		IAI47_06210	0.62	-0.9
1,264,059	-		IAI47_06210	0.62	-2.5
1,264,059	-		IAI47_06210	0.62	-1.2
1,264,191	+		IAI47_06210	0.75	+0.4
1,264,192	-		IAI47_06210	0.76	-0.2
1,264,201	-		IAI47_06210	0.76	+0.1
1,264,201	-		IAI47_06210	0.76	-0.3
1,264,202	+		IAI47_06210	0.77	-0.9
1,264,202	+		IAI47_06210	0.77	-1.2
1,264,202	+		IAI47_06210	0.77	-0.9
1,264,202	+		IAI47_06210	0.77	+0.8
1,264,202	+		IAI47_06210	0.77	+0.7
1,264,202	+		IAI47_06210	0.77	-0.7
1,264,202	+		IAI47_06210	0.77	-2.1
1,264,203	-		IAI47_06210	0.77	-1.8
1,264,203	-		IAI47_06210	0.77	+0.0
1,264,203	-		IAI47_06210	0.77	+0.4
1,264,203	-		IAI47_06210	0.77	-1.8
1,264,203	-		IAI47_06210	0.77	-0.0
1,264,230	+		IAI47_06210	0.79	-1.2
1,264,230	+		IAI47_06210	0.79	-1.5
1,264,231	-		IAI47_06210	0.80	-1.2
1,264,231	-		IAI47_06210	0.80	-0.6
1,264,231	-		IAI47_06210	0.80	-0.2
1,264,231	-		IAI47_06210	0.80	+0.8
1,264,231	-		IAI47_06210	0.80	-0.3
1,264,232	+		IAI47_06210	0.80	-0.6
1,264,232	+		IAI47_06210	0.80	-3.6
1,264,232	+		IAI47_06210	0.80	+1.4
1,264,232	+		IAI47_06210	0.80	-2.2
1,264,232	+		IAI47_06210	0.80	-0.2
1,264,232	+		IAI47_06210	0.80	-1.7
1,264,232	+		IAI47_06210	0.80	-0.5
1,264,232	+		IAI47_06210	0.80	-1.1
1,264,232	+		IAI47_06210	0.80	-1.4
1,264,232	+		IAI47_06210	0.80	-1.0
1,264,232	+		IAI47_06210	0.80	-2.1
1,264,232	+		IAI47_06210	0.80	+1.4
1,264,232	+		IAI47_06210	0.80	-1.3
1,264,232	+		IAI47_06210	0.80	-2.6
1,264,232	+		IAI47_06210	0.80	-1.9
1,264,233	-		IAI47_06210	0.80	+0.4
1,264,233	-		IAI47_06210	0.80	-1.8
1,264,233	-		IAI47_06210	0.80	-3.0
1,264,233	-		IAI47_06210	0.80	-1.1
1,264,233	-		IAI47_06210	0.80	-2.0
1,264,233	-		IAI47_06210	0.80	+0.7
1,264,233	-		IAI47_06210	0.80	-0.0
1,264,233	-		IAI47_06210	0.80	-0.9
1,264,233	-		IAI47_06210	0.80	-2.8
1,264,299	+		IAI47_06210	0.86	-0.3
1,264,299	+		IAI47_06210	0.86	-0.8
1,264,300	-		IAI47_06210	0.87	-0.6
1,264,300	-		IAI47_06210	0.87	-1.2
1,264,300	-		IAI47_06210	0.87	-0.6
1,264,335	+				-0.8
1,264,335	+				-0.9
1,264,335	+				-0.8
1,264,335	+				-2.0
1,264,335	+				-0.1
1,264,335	+				-0.2
1,264,335	+				-0.3
1,264,335	+				+2.4
1,264,335	+				-0.2
1,264,335	+				-1.4
1,264,335	+				+0.7
1,264,335	+				-1.2
1,264,335	+				-0.3
1,264,336	-				-0.2
1,264,336	-				-0.6
1,264,336	-				-1.0
1,264,336	-				-2.5
1,264,344	+				-0.6
1,264,344	+				-0.9
1,264,404	+				-1.2
1,264,404	+				+1.4
1,264,405	-				-1.5
1,264,405	-				-0.9
1,264,405	-				-0.6
1,264,420	+				-1.5
1,264,421	-				-1.4
1,264,421	-				-0.9
1,264,464	+				-1.6
1,264,464	+				-0.7
1,264,465	-				-0.4
1,264,465	-				-1.2
1,264,465	-				-0.7
1,264,465	-				+0.5
1,264,472	+				-2.2
1,264,504	+				-3.8
1,264,535	+				-2.5
1,264,536	-				+1.8
1,264,536	-				+0.7
1,264,551	+				-1.2
1,264,552	-				+0.9
1,264,552	-				-0.1
1,264,552	-				-1.9
1,264,562	+				-1.4
1,264,562	+				-1.1
1,264,562	+				-0.8
1,264,563	-				+0.8
1,264,568	+				-1.6
1,264,572	-				+1.4
1,264,575	+				-4.2
1,264,576	-				+0.2
1,264,576	-				+0.6
1,264,576	-				+0.4
1,264,576	-				+1.8
1,264,684	+		IAI47_06215	0.20	-1.1
1,264,685	-		IAI47_06215	0.20	-0.9
1,264,720	-		IAI47_06215	0.25	-0.3
1,264,720	-		IAI47_06215	0.25	-0.0
1,264,785	-		IAI47_06215	0.35	+1.0
1,264,843	+		IAI47_06215	0.43	-0.6
1,264,843	+		IAI47_06215	0.43	-1.9
1,264,843	+		IAI47_06215	0.43	-0.0
1,264,843	+		IAI47_06215	0.43	-2.8
1,264,843	+		IAI47_06215	0.43	-1.4
1,264,843	+		IAI47_06215	0.43	-0.6
1,264,844	-		IAI47_06215	0.43	-0.6
1,264,844	-		IAI47_06215	0.43	-0.9
1,264,844	-		IAI47_06215	0.43	-1.2
1,264,844	-		IAI47_06215	0.43	-0.6
1,264,966	+		IAI47_06215	0.62	+0.4
1,264,967	-		IAI47_06215	0.62	-0.2
1,264,967	-		IAI47_06215	0.62	-1.3
1,264,967	-		IAI47_06215	0.62	+0.4
1,264,997	+		IAI47_06215	0.66	-0.6
1,265,017	-		IAI47_06215	0.69	-1.6
1,265,017	-		IAI47_06215	0.69	-1.1
1,265,022	+		IAI47_06215	0.70	-1.1
1,265,022	+		IAI47_06215	0.70	+1.0
1,265,022	+		IAI47_06215	0.70	-1.9
1,265,022	+		IAI47_06215	0.70	-2.4
1,265,022	+		IAI47_06215	0.70	-0.3
1,265,022	+		IAI47_06215	0.70	-1.8
1,265,023	-		IAI47_06215	0.70	+0.7
1,265,023	-		IAI47_06215	0.70	-0.9
1,265,023	-		IAI47_06215	0.70	-1.9
1,265,023	-		IAI47_06215	0.70	-0.8
1,265,025	+		IAI47_06215	0.70	-0.2
1,265,025	+		IAI47_06215	0.70	+0.1
1,265,025	+		IAI47_06215	0.70	-1.8
1,265,026	-		IAI47_06215	0.71	-1.3
1,265,072	-		IAI47_06215	0.77	-2.0
1,265,072	-		IAI47_06215	0.77	-1.7
1,265,085	+		IAI47_06215	0.79	-0.2
1,265,085	+		IAI47_06215	0.79	-2.8
1,265,085	+		IAI47_06215	0.79	-2.4
1,265,086	-		IAI47_06215	0.79	+0.4
1,265,086	-		IAI47_06215	0.79	-0.6
1,265,086	-		IAI47_06215	0.79	-1.9
1,265,086	-		IAI47_06215	0.79	-3.3
1,265,125	+		IAI47_06215	0.85	-1.2
1,265,125	+		IAI47_06215	0.85	+0.4
1,265,125	+		IAI47_06215	0.85	-1.2
1,265,125	+		IAI47_06215	0.85	-1.6
1,265,125	+		IAI47_06215	0.85	+0.1
1,265,125	+		IAI47_06215	0.85	+0.1
1,265,125	+		IAI47_06215	0.85	-0.6
1,265,125	+		IAI47_06215	0.85	-2.8
1,265,125	+		IAI47_06215	0.85	-0.9
1,265,125	+		IAI47_06215	0.85	-0.9
1,265,125	+		IAI47_06215	0.85	-1.4
1,265,125	+		IAI47_06215	0.85	-0.8
1,265,125	+		IAI47_06215	0.85	-0.9
1,265,125	+		IAI47_06215	0.85	+0.4
1,265,126	-		IAI47_06215	0.85	-1.6
1,265,126	-		IAI47_06215	0.85	+0.4
1,265,126	-		IAI47_06215	0.85	-1.1
1,265,126	-		IAI47_06215	0.85	-2.9
1,265,126	-		IAI47_06215	0.85	-0.5
1,265,126	-		IAI47_06215	0.85	-3.2
1,265,126	-		IAI47_06215	0.85	-0.3
1,265,126	-		IAI47_06215	0.85	+0.8
1,265,126	-		IAI47_06215	0.85	-0.3
1,265,126	-		IAI47_06215	0.85	-0.6
1,265,126	-		IAI47_06215	0.85	+0.1
1,265,165	+				-0.9
1,265,165	+				-1.6
1,265,165	+				+0.1
1,265,166	-				+1.4
1,265,166	-				-1.4
1,265,166	-				-1.6
1,265,295	+				+0.4
1,265,295	+				+0.4
1,265,295	+				-1.8
1,265,295	+				-1.4
1,265,295	+				-1.2
1,265,295	+				-0.6
1,265,295	+				-0.2
1,265,296	-				+0.1
1,265,296	-				-1.9
1,265,296	-				-2.2
1,265,296	-				+1.1
1,265,296	-				-0.2
1,265,297	+				-2.6
1,265,298	-				-1.6
1,265,337	+				-2.1
1,265,338	-				-0.9
1,265,338	-				+0.8
1,265,390	-		IAI47_06220	0.13	-1.3
1,265,390	-		IAI47_06220	0.13	+0.4