Strain Fitness in Pantoea sp. MT58 around IAI47_06200

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,260,603	-		IAI47_06195	0.26	+0.2
1,260,713	+		IAI47_06195	0.36	+0.4
1,260,714	-		IAI47_06195	0.37	+0.4
1,260,804	+		IAI47_06195	0.45	+2.7
1,260,852	+		IAI47_06195	0.50	+0.4
1,260,852	+		IAI47_06195	0.50	+2.0
1,260,852	+		IAI47_06195	0.50	-0.3
1,260,853	-		IAI47_06195	0.50	+0.7
1,260,853	-		IAI47_06195	0.50	-0.4
1,260,876	+		IAI47_06195	0.52	+0.6
1,261,006	-		IAI47_06195	0.64	+1.9
1,261,029	+		IAI47_06195	0.67	+0.4
1,261,103	-		IAI47_06195	0.74	+1.1
1,261,103	-		IAI47_06195	0.74	+1.3
1,261,110	+		IAI47_06195	0.74	+1.2
1,261,110	+		IAI47_06195	0.74	-0.2
1,261,113	+		IAI47_06195	0.75	+1.4
1,261,113	+		IAI47_06195	0.75	-0.0
1,261,113	+		IAI47_06195	0.75	-0.2
1,261,113	+		IAI47_06195	0.75	-0.5
1,261,114	-		IAI47_06195	0.75	+1.2
1,261,114	-		IAI47_06195	0.75	+0.7
1,261,114	-		IAI47_06195	0.75	+2.4
1,261,114	-		IAI47_06195	0.75	-0.4
1,261,118	+		IAI47_06195	0.75	-1.2
1,261,118	+		IAI47_06195	0.75	-0.8
1,261,119	-		IAI47_06195	0.75	-0.5
1,261,119	-		IAI47_06195	0.75	+0.2
1,261,212	+		IAI47_06195	0.84	+0.3
1,261,212	+		IAI47_06195	0.84	-0.2
1,261,233	+		IAI47_06195	0.86	-1.6
1,261,233	+		IAI47_06195	0.86	+1.1
1,261,234	-		IAI47_06195	0.86	+0.7
1,261,234	-		IAI47_06195	0.86	-0.6
1,261,234	-		IAI47_06195	0.86	-0.2
1,261,234	-		IAI47_06195	0.86	+2.0
1,261,234	-		IAI47_06195	0.86	-0.0
1,261,252	+		IAI47_06195	0.88	+0.7
1,261,252	+		IAI47_06195	0.88	-0.3
1,261,253	-		IAI47_06195	0.88	-0.3
1,261,253	-		IAI47_06195	0.88	+0.4
1,261,253	-		IAI47_06195	0.88	-0.2
1,261,253	-		IAI47_06195	0.88	+1.8
1,261,253	-		IAI47_06195	0.88	-1.2
1,261,365	+				-0.3
1,261,366	-				-1.3
1,261,428	+				+0.4
1,261,429	-				-0.2
1,261,438	+				+0.9
1,261,438	+				+0.4
1,261,439	-				-0.3
1,261,439	-				+1.0
1,261,492	+				+0.0
1,261,493	-				-1.1
1,261,493	-				+0.4
1,261,584	-				-0.4
1,261,713	-		IAI47_06200	0.15	-2.6
1,261,721	+		IAI47_06200	0.15	-0.6
1,261,721	+		IAI47_06200	0.15	-2.2
1,261,721	+		IAI47_06200	0.15	-1.4
1,261,721	+		IAI47_06200	0.15	-0.6
1,261,721	+		IAI47_06200	0.15	+3.9
1,261,721	+		IAI47_06200	0.15	-0.7
1,261,721	+		IAI47_06200	0.15	-1.2
1,261,721	+		IAI47_06200	0.15	+1.4
1,261,722	-		IAI47_06200	0.15	-0.6
1,261,722	-		IAI47_06200	0.15	-0.9
1,261,722	-		IAI47_06200	0.15	-1.2
1,261,722	-		IAI47_06200	0.15	-1.2
1,261,722	-		IAI47_06200	0.15	-1.3
1,261,722	-		IAI47_06200	0.15	-1.2
1,261,723	+		IAI47_06200	0.15	-0.5
1,261,723	+		IAI47_06200	0.15	-1.6
1,261,724	-		IAI47_06200	0.15	-1.7
1,261,724	-		IAI47_06200	0.15	-0.4
1,261,724	-		IAI47_06200	0.15	-1.1
1,261,724	-		IAI47_06200	0.15	+0.4
1,261,734	-		IAI47_06200	0.16	-1.2
1,261,734	-		IAI47_06200	0.16	-1.2
1,261,802	+		IAI47_06200	0.21	-1.8
1,261,842	+		IAI47_06200	0.23	-0.3
1,261,843	-		IAI47_06200	0.23	-1.6
1,261,874	+		IAI47_06200	0.25	-0.0
1,261,874	+		IAI47_06200	0.25	-0.3
1,261,893	+		IAI47_06200	0.27	-3.4
1,261,893	+		IAI47_06200	0.27	-1.2
1,261,893	+		IAI47_06200	0.27	+0.4
1,261,893	+		IAI47_06200	0.27	+1.6
1,261,893	+		IAI47_06200	0.27	-1.3
1,261,893	+		IAI47_06200	0.27	-0.8
1,261,893	+		IAI47_06200	0.27	+0.2
1,261,893	+		IAI47_06200	0.27	-0.6
1,261,893	+		IAI47_06200	0.27	-2.2
1,261,893	+		IAI47_06200	0.27	-0.6
1,261,893	+		IAI47_06200	0.27	-1.8
1,261,893	+		IAI47_06200	0.27	+1.0
1,261,893	+		IAI47_06200	0.27	-2.3
1,261,894	-		IAI47_06200	0.27	-0.4
1,261,894	-		IAI47_06200	0.27	-2.4
1,261,894	-		IAI47_06200	0.27	-0.6
1,261,894	-		IAI47_06200	0.27	-0.0
1,261,894	-		IAI47_06200	0.27	-0.7
1,261,894	-		IAI47_06200	0.27	-0.6
1,261,934	+		IAI47_06200	0.29	+0.4
1,261,934	+		IAI47_06200	0.29	-1.0
1,261,934	+		IAI47_06200	0.29	-2.2
1,261,934	+		IAI47_06200	0.29	-2.6
1,261,934	+		IAI47_06200	0.29	-1.6
1,261,934	+		IAI47_06200	0.29	-0.3
1,261,935	-		IAI47_06200	0.29	-0.8
1,261,935	-		IAI47_06200	0.29	-1.1
1,261,935	-		IAI47_06200	0.29	-1.6
1,261,935	-		IAI47_06200	0.29	-2.4
1,261,978	+		IAI47_06200	0.32	-0.9
1,261,979	-		IAI47_06200	0.32	-0.6
1,261,979	-		IAI47_06200	0.32	+0.1
1,262,028	-		IAI47_06200	0.36	+0.4
1,262,049	-		IAI47_06200	0.37	+0.4
1,262,049	-		IAI47_06200	0.37	-1.6
1,262,105	+		IAI47_06200	0.41	-0.8
1,262,155	+		IAI47_06200	0.44	-0.3
1,262,155	+		IAI47_06200	0.44	+0.4
1,262,155	+		IAI47_06200	0.44	+1.8
1,262,156	-		IAI47_06200	0.44	-1.4
1,262,162	+		IAI47_06200	0.45	-0.6
1,262,162	+		IAI47_06200	0.45	-2.1
1,262,163	-		IAI47_06200	0.45	-1.9
1,262,163	-		IAI47_06200	0.45	-1.9
1,262,163	-		IAI47_06200	0.45	-1.6
1,262,163	-		IAI47_06200	0.45	-0.6
1,262,163	-		IAI47_06200	0.45	+1.4
1,262,163	-		IAI47_06200	0.45	-0.2
1,262,193	+		IAI47_06200	0.47	-1.2
1,262,194	-		IAI47_06200	0.47	+0.4
1,262,194	-		IAI47_06200	0.47	-1.5
1,262,194	-		IAI47_06200	0.47	-0.7
1,262,194	-		IAI47_06200	0.47	-1.5
1,262,249	+		IAI47_06200	0.50	-2.5
1,262,250	-		IAI47_06200	0.50	-2.6
1,262,322	+		IAI47_06200	0.55	-1.5
1,262,322	+		IAI47_06200	0.55	-0.9
1,262,322	+		IAI47_06200	0.55	-1.8
1,262,322	+		IAI47_06200	0.55	-1.9
1,262,323	-		IAI47_06200	0.55	-0.4
1,262,412	-		IAI47_06200	0.61	-0.8
1,262,450	+		IAI47_06200	0.64	-0.3
1,262,466	+		IAI47_06200	0.65	-1.2
1,262,466	+		IAI47_06200	0.65	-2.1
1,262,467	-		IAI47_06200	0.65	-1.6
1,262,467	-		IAI47_06200	0.65	-2.0
1,262,469	+		IAI47_06200	0.65	-2.2
1,262,469	+		IAI47_06200	0.65	-1.2
1,262,470	-		IAI47_06200	0.65	-1.3
1,262,470	-		IAI47_06200	0.65	-0.6
1,262,470	-		IAI47_06200	0.65	-1.2
1,262,470	-		IAI47_06200	0.65	-1.2
1,262,470	-		IAI47_06200	0.65	+2.1
1,262,470	-		IAI47_06200	0.65	+0.4
1,262,606	+		IAI47_06200	0.74	+0.4
1,262,606	+		IAI47_06200	0.74	-1.1
1,262,606	+		IAI47_06200	0.74	-1.0
1,262,607	-		IAI47_06200	0.74	-0.1
1,262,607	-		IAI47_06200	0.74	-3.2
1,262,773	+		IAI47_06200	0.85	-0.2
1,262,773	+		IAI47_06200	0.85	+0.8
1,262,774	-		IAI47_06200	0.85	-1.1
1,262,774	-		IAI47_06200	0.85	-0.6
1,262,774	-		IAI47_06200	0.85	+0.1
1,262,774	-		IAI47_06200	0.85	+0.4
1,262,774	-		IAI47_06200	0.85	-0.6
1,262,787	-		IAI47_06200	0.86	-1.4
1,262,788	+		IAI47_06200	0.86	-0.7
1,262,788	+		IAI47_06200	0.86	-1.8
1,262,788	+		IAI47_06200	0.86	-0.2
1,262,788	+		IAI47_06200	0.86	-1.2
1,262,789	-		IAI47_06200	0.86	-1.1
1,262,826	+		IAI47_06200	0.89	-1.6
1,262,826	+		IAI47_06200	0.89	+1.1
1,262,827	-		IAI47_06200	0.89	-1.2
1,262,827	-		IAI47_06200	0.89	+0.4
1,262,913	-				-1.6
1,262,913	-				+0.1
1,262,913	-				-0.6
1,262,976	+				-0.0
1,262,977	-				-1.1
1,262,977	-				-1.0
1,262,990	+				-1.2
1,262,990	+				-1.2
1,262,991	-				-0.8
1,262,999	+				-0.8
1,262,999	+				-2.4
1,263,000	-				-1.8
1,263,000	-				+0.4
1,263,000	-				-0.0
1,263,008	+				+1.1
1,263,008	+				-1.2
1,263,009	-				-0.2
1,263,063	-		IAI47_06205	0.13	+2.4
1,263,063	-		IAI47_06205	0.13	-0.7
1,263,082	+		IAI47_06205	0.17	-0.0
1,263,083	-		IAI47_06205	0.18	+1.4
1,263,083	-		IAI47_06205	0.18	-0.6
1,263,194	+		IAI47_06205	0.43	-0.8
1,263,194	+		IAI47_06205	0.43	-1.8
1,263,194	+		IAI47_06205	0.43	-1.2
1,263,194	+		IAI47_06205	0.43	-0.8
1,263,195	-		IAI47_06205	0.44	-0.9
1,263,195	-		IAI47_06205	0.44	+0.4
1,263,195	-		IAI47_06205	0.44	+0.4
1,263,195	-		IAI47_06205	0.44	-0.9
1,263,195	-		IAI47_06205	0.44	+0.4
1,263,351	-		IAI47_06205	0.80	-0.2
1,263,351	-		IAI47_06205	0.80	-0.0
1,263,356	+		IAI47_06205	0.81	+0.4
1,263,356	+		IAI47_06205	0.81	+0.4
1,263,357	-		IAI47_06205	0.81	+0.4
1,263,357	-		IAI47_06205	0.81	-1.9
1,263,357	-		IAI47_06205	0.81	-0.6
1,263,379	+		IAI47_06205	0.86	-1.6
1,263,379	+		IAI47_06205	0.86	+0.4
1,263,379	+		IAI47_06205	0.86	-0.6
1,263,379	+		IAI47_06205	0.86	-1.4
1,263,379	+		IAI47_06205	0.86	-0.6
1,263,379	+		IAI47_06205	0.86	-0.6
1,263,380	-		IAI47_06205	0.86	-1.6
1,263,380	-		IAI47_06205	0.86	-1.1
1,263,380	-		IAI47_06205	0.86	-0.8
1,263,380	-		IAI47_06205	0.86	-0.3
1,263,380	-		IAI47_06205	0.86	+0.7
1,263,382	+		IAI47_06205	0.87	+0.4
1,263,382	+		IAI47_06205	0.87	+0.1
1,263,382	+		IAI47_06205	0.87	-1.6
1,263,383	-		IAI47_06205	0.87	-1.6
1,263,383	-		IAI47_06205	0.87	+0.4
1,263,383	-		IAI47_06205	0.87	-0.4
1,263,383	-		IAI47_06205	0.87	-1.7
1,263,383	-		IAI47_06205	0.87	-0.6
1,263,426	+				-2.6
1,263,452	+				-0.3
1,263,452	+				-0.7
1,263,452	+				+2.7
1,263,452	+				-0.6
1,263,452	+				-0.7
1,263,452	+				-1.6
1,263,488	+				-1.8
1,263,512	+				-1.4
1,263,512	+				-1.0
1,263,512	+				-1.5
1,263,512	+				-0.3
1,263,512	+				+0.2
1,263,512	+				-0.4
1,263,512	+				-0.8
1,263,512	+				-0.8
1,263,513	-				-0.2
1,263,513	-				-1.1
1,263,513	-				+0.8
1,263,562	-		IAI47_06210	0.11	+0.1
1,263,603	+		IAI47_06210	0.15	+0.4
1,263,627	-		IAI47_06210	0.18	-0.3
1,263,627	-		IAI47_06210	0.18	-0.6
1,263,656	+		IAI47_06210	0.21	-1.0
1,263,656	+		IAI47_06210	0.21	-0.6
1,263,656	+		IAI47_06210	0.21	-0.6
1,263,656	+		IAI47_06210	0.21	-3.4
1,263,656	+		IAI47_06210	0.21	-2.9
1,263,656	+		IAI47_06210	0.21	-1.0
1,263,656	+		IAI47_06210	0.21	-1.2
1,263,656	+		IAI47_06210	0.21	-1.3
1,263,656	+		IAI47_06210	0.21	-1.3
1,263,657	-		IAI47_06210	0.21	+0.8
1,263,657	-		IAI47_06210	0.21	-0.9
1,263,657	-		IAI47_06210	0.21	-2.4
1,263,657	-		IAI47_06210	0.21	+0.4
1,263,657	-		IAI47_06210	0.21	-0.2
1,263,660	-		IAI47_06210	0.21	-2.1
1,263,660	-		IAI47_06210	0.21	+0.4
1,263,687	+		IAI47_06210	0.24	-0.2
1,263,687	+		IAI47_06210	0.24	+0.2
1,263,687	+		IAI47_06210	0.24	-0.6
1,263,687	+		IAI47_06210	0.24	-0.9
1,263,687	+		IAI47_06210	0.24	-0.9
1,263,688	-		IAI47_06210	0.24	-2.9
1,263,688	-		IAI47_06210	0.24	-0.1
1,263,688	-		IAI47_06210	0.24	-1.9
1,263,688	-		IAI47_06210	0.24	-2.2
1,263,688	-		IAI47_06210	0.24	-0.8
1,263,760	+		IAI47_06210	0.31	-0.6
1,263,825	+		IAI47_06210	0.38	-2.2
1,263,825	+		IAI47_06210	0.38	+0.1
1,263,825	+		IAI47_06210	0.38	-0.8
1,263,826	-		IAI47_06210	0.38	-1.4
1,263,878	+		IAI47_06210	0.44	+0.4
1,263,879	-		IAI47_06210	0.44	-0.6
1,263,879	-		IAI47_06210	0.44	+2.4
1,263,879	-		IAI47_06210	0.44	-0.0
1,263,879	-		IAI47_06210	0.44	-3.3